Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-009187

Sequence: [FASTA format sequence] TCTGCGGCTC CTGCCCCGAG CGTGCGGGGC TGCCCAGCAG CGGGAGGCAG CAGGGCCCCG TCTTCCCGCC GCCAGAGAGA TTTCATCACC TGCACAATTT TCTGGAAGCA AACCAAGGCC AGAGGGGGAG TTACCCGATC TTTGAAGACT CAGGCTAAAC TGACATTTAA AATGCTCTTC ATGGGAGGAT GGAGCTGGAC CTACACTTTC ATAATAATCT GTTCCCTGAC GCTCCAGCTG TCTGCCAGTC AGACCTGCCC CACTGAGAGT CTGGAAGATG TGGTCATTGA CATCCAGTCC TCCCTTTCCA GGGGAATCAG AGGCAATGAG CCCATACATA TGTTAACTCA AGAGGACTGC ATCAATTCTT GCTGTTTGAC AAAAAACATA TCAGGGGACA GAGCATGTAA CCTGATGATC TTCGACACTC GAAAAACAAC TAGACAACCC AACTGCTACC TGTTTTTCTG TCCCAGTGAG GAAGCCTGTC CCCTGAAACC AGCAAAGGGA CTTAGGAGTT ACAGGATAAT TAGAGATTTT CCATCTTTGC GCACAACTGG TTTGCCAAGC CAAACAGTAG CCCAAGAAGA TGGTCGCTTC CAGGGCGGGT CTTCACACCG CCTCCCTCCC TCACCCCCTC CTCGGACAGG GTATTCCAAG CCCACCGTCT TCTGGGGGGA TTCATTTTCT CAGAAGTTGG GATCCTCAGG TCACGTGGAA AAACTACTCA AGATTGAGCT AGCGAGTCCA CAGTTGCCTG TTTATAAAGA CGAAGGACAT TCTCAGAAGT CACCGTCTTC GTCAGAACCC AGAGGAGCTC ATCTGCTGGC AGAAAGGTGA CAATGTTTCC CACGACAGTG GCAGAGGCTT CCCTGCACAC CCTCTGGACC ACTCCCCAGC CCGCATCTCT CCCCACCCCC AGCTCCGCAG GGACGCCACC TGGGGCGACG CCACCTGGGG GCGACCCCTT CGCCGCAACT GCAGCCACGG TCCCTGGCAC GAACACCACT GCCGTTCTGA CTTTTCACTT AGGGCTTTGA CCGACT

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
MANSC1 MANSC domain-containing protein 1 precursor [Homo sapiens]. 290 6e-79 O

		Locus	Definition	Score	E value	FL
		MANSC1	MANSC domain-containing protein 1 precursor [Homo sapiens].	290	6e-79	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Mansc1 MANSC domain-containing protein 1 precursor [Mus musculus]. 220 1e-57 O

		Locus	Definition	Score	E value	FL
		Mansc1	MANSC domain-containing protein 1 precursor [Mus musculus].	220	1e-57	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC611242 PREDICTED: similar to MANSC domain containing 1 [Canis familiaris]. 303 2e-82 O

		Locus	Definition	Score	E value	FL
		LOC611242	PREDICTED: similar to MANSC domain containing 1 [Canis familiaris].	303	2e-82	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
MANSC1 MANSC domain-containing protein 1 [Bos taurus]. 310 9e-87 O

		Locus	Definition	Score	E value	FL
		MANSC1	MANSC domain-containing protein 1 [Bos taurus].	310	9e-87	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL

Assembly Members: 4 TOP

Library Plate Loc. Read Name Accession Full Seq.

KDN01 0082 E08 KDN01_0082_E08.b FS676962
PST01 0025 D10 PST01_0025_D10.b FS698954
PST01 0035 B09 PST01_0035_B09.b FS699562
SMG01 0081 D10 SMG01_0081_D10.b FS720274 AK397589

SNPs: 2 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
300 C 2 0 0.500 W S TCC/S
G 2 0 0.500 TCG/S
405 A 2 0 0.500 W S GCA/A
G 2 0 0.500 GCG/A

Alignment: TOP

20110601C-009187 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SMG01_0081_D10.b : nnccccttttnnnnnggagtatagcagcggnaxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PST01_0025_D10.b :                                                   nccctgctgt
PST01_0035_B09.b :                                                             
KDN01_0082_E08.b :                              nnnnncctgcggtggctggctccgcccgcgc


20110601C-009187 : ........TCTGCGGCTCCTGCCCCGAGCGTGCGGGGCTGCCCAGCAGCGGGAGGCAGCA
                   ---------+---------+---------+---------+---------+---------+ 52
SMG01_0081_D10.b : xxxxxxxxTCTGCGGCTCCTGCCCCGAGCGTGCGGGGCTGCCCAGCAGCGGGAGGCAGCA
PST01_0025_D10.b : ggctctggttcgcggctcctGCCCCGAGCGTGCGGGGCTGCCCAGCAGCGGGAGGCAGCA
PST01_0035_B09.b :          ncctcgcggtggctcgggaCGTGCGGGGCTGCCCAGCAGCGGGAGGCAGCA
KDN01_0082_E08.b : cttgcggatctgcggctcctgccccgagcgtgcggggctgcccagcagcggggggcagca


20110601C-009187 : GGGCCCCGTCTTCCCGCCGCCAGAGAGATTTCATCACCTGCACAATTTTCTGGAAGCAAA
                   ---------+---------+---------+---------+---------+---------+ 112
SMG01_0081_D10.b : GGGCCCCGTCTTCCCGCCGCCAGAGAGATTTCATCACCTGCACAATTTTCTGGAAGCAAA
PST01_0025_D10.b : GGGCCCCGTCTTCCCGCCGCCAGAGAGATTTCATCACCTGCACAATTTTCTGGAAGCAAA
PST01_0035_B09.b : GGGCCCCGTCTTCCCGCCTCCAGAGAGATTTCATCACCTGCACAATTTTCTGGAAGCAAA
KDN01_0082_E08.b : gggccccgtcttcccgccgccaGAGAGATTTCATCACCTGCACAATTTTCTGGAAGCAAA


20110601C-009187 : CCAAGGCCAGAGGGGGAGTTACCCGATCTTTGAAGACTCAGGCTAAACTGACATTTAAAA
                   ---------+---------+---------+---------+---------+---------+ 172
SMG01_0081_D10.b : CCAAGGCCAGAGGGGGAGTTACCCGATCTTTGAAGACTCAGGCTAAACTGACATTTAAAA
PST01_0025_D10.b : CCAAGGCCAGAGGGGGAGTTACCCGATCTTTGAAGACTCAGGCTAAACTGACATTTAAAA
PST01_0035_B09.b : CCAAGGCCAGAGGGGGAGTTACCCGATCTTTGAAGACTCAGGCTAAACTGACATTTAAAA
KDN01_0082_E08.b : CCAAGGCCAGAGGGGGAGTTACCCGATCTTTGAAGACTCAGGCTAAACTGACATTTAAAA


20110601C-009187 : TGCTCTTCATGGGAGGATGGAGCTGGACCTACACTTTCATAATAATCTGTTCCCTGACGC
                   ---------+---------+---------+---------+---------+---------+ 232
SMG01_0081_D10.b : TGCTCTTCATGGGAGGATGGAGCTGGACCTACACTTTCATAATAATCTGTTCCCTGACGC
PST01_0025_D10.b : TGCTCTTCATGGGAGGATGGAGCTGGACCTACACTTTCATAATAATCTGTTCCCTGACGC
PST01_0035_B09.b : TGCTCTTCATGGGAGGATGGAGCTGGACCTACACTTTCATAATAATCTGTTCCCTGACGC
KDN01_0082_E08.b : TGCTCTTCATGGGAGGATGGAGCTGGACCTACACTTTCATAATAATCTGTTCCCTGACGC


20110601C-009187 : TCCAGCTGTCTGCCAGTCAGACCTGCCCCACTGAGAGTCTGGAAGATGTGGTCATTGACA
                   ---------+---------+---------+---------+---------+---------+ 292
SMG01_0081_D10.b : TCCAGCTGTCTGCCAGTCAGACCTGCCCCACTGAGAGTCTGGAAGATGTGGTCATTGACA
PST01_0025_D10.b : TCCAGCTGTCTGCCAGTCAGACCTGCCCCACTGAGAGTCTGGAAGATGTGGTCATTGACA
PST01_0035_B09.b : TCCAGCTGTCTGCCAGTCAGACCTGCCCCACTGAGAGTCTGGAAGATGTGGTCATTGACA
KDN01_0082_E08.b : TCCAGCTGTCTGCCAGTCAGACCTGCCCCACTGAGAGTCTGGAAGATGTGGTCATTGACA


20110601C-009187 : TCCAGTCCTCCCTTTCCAGGGGAATCAGAGGCAATGAGCCCATACATATGTTAACTCAAG
                   ---------+---------+---------+---------+---------+---------+ 352
SMG01_0081_D10.b : TCCAGTCCTCCCTCTCCAGGGGAATCAGAGGCAATGAGCCCATACATATGTTAACTCAAG
PST01_0025_D10.b : TCCAGTCGTCCCTTTCCAGGGGAATCAGAGGCAATGAGCCCATACATATGTTAACTCAAG
PST01_0035_B09.b : TCCAGTCGTCCCTTTCCAGGGGAATCAGGGGCAATGAGCCCATACATATGTTAACTCAAG
KDN01_0082_E08.b : TCCAGTCCTCCCTTTCCAGGGGAATCAGAGGCAATGAGCCCATACATATGTTAACTCAAG


20110601C-009187 : AGGACTGCATCAATTCTTGCTGTTTGACAAAAAACATATCAGGGGACAGAGCATGTAACC
                   ---------+---------+---------+---------+---------+---------+ 412
SMG01_0081_D10.b : AGGACTGCATCAATTCTTGCTGTTTGACAAAAAACATATCAGGGGACAGAGCATGTAACC
PST01_0025_D10.b : AGGACTGCATCAATTCTTGCTGTTTGACAAAAAACATATCAGGGGACAGAGCGTGTAACC
PST01_0035_B09.b : AGGACTGCATCAATTCTTGCTGTTTGACAAAAAACATATCAGGGGACAGAGCGTGTAACC
KDN01_0082_E08.b : AGGACTGCATCAATTCTTGCTGTTTGACAAAAAACATATCAGGGGACAGAGCATGTAACC


20110601C-009187 : TGATGATCTTCGACACTCGAAAAACAACTAGACAACCCAACTGCTACCTGTTTTTCTGTC
                   ---------+---------+---------+---------+---------+---------+ 472
SMG01_0081_D10.b : TGATGATCTTCGACACTCGAAAAACAACTAGACAACCCAACTGCTACCTGTTTTTCTGTC
PST01_0025_D10.b : TGATGATCTTCGACACTCGAAAAACAACTAGACAACCCAACTGCTACCTGTTTTTCTGTC
PST01_0035_B09.b : TGATGATCTTCGACACTCGAAAAACAACTAGACAACCCAACTGCTACCTGTTTTTCTGTC
KDN01_0082_E08.b : TGATGATCTTCGACACTCGAAAAACAACTAGACAACCCAACTGCTACCTGTTTTTCTGTC


20110601C-009187 : CCAGTGAGGAAGCCTGTCCCCTGAAACCAGCAAAGGGACTTAGGAGTTACAGGATAATTA
                   ---------+---------+---------+---------+---------+---------+ 532
SMG01_0081_D10.b : CCAGTGAGGAAGCCTGTCCCCTGAAACCAGCAAAGGGACTTAGGAGTTACAGGATAATTA
PST01_0025_D10.b : CCAGTGAGGAAGCCTGTCCCCTGAAACCAGCAAAGGGACTTAGGAGTTACAGGATAATTA
PST01_0035_B09.b : CCAGTGAGGAAGCCTGTCCCCTGAAACCAGCAAAGGGACTTAGGAGTTACAGGATAATTA
KDN01_0082_E08.b : CCAGTGAGGAAGCCTGTCCCCTGAAACCAGCAAAGGGACTTAGGAGTTACAGGATAATTA


20110601C-009187 : GAGATTTTCCATCTTTGCGCACAACTGGTTTGCCAAGCCAAACAGTAGCCCAAGAAGATG
                   ---------+---------+---------+---------+---------+---------+ 592
SMG01_0081_D10.b : GAGATTTTCCATCTTTGCGCACAACTGGTTTGCCAAGCCAAACAGTAGCCCAAGAAGATG
PST01_0025_D10.b : GAGATTTTCCATCTTTGCGCACAACTGGTTTGCCAAGCCAAACAGTAGCCCAAGAAGATG
PST01_0035_B09.b : GAGATTTTCCATCTTTGCGCACAACTGGTTTGCCAAGCCAAACAGTAGCCCAAGAAGATG
KDN01_0082_E08.b : GAGATTTTCCATCTTTGCGCACAACTGGTTTGCCAAGCCAAACAGTAGCCCAAGAAGATG


20110601C-009187 : GTCGCTTCCAGGGCGGGTCTTCACACCGCCTCCCTCCCTCACCCCCTCCTCGGACAGGGT
                   ---------+---------+---------+---------+---------+---------+ 652
SMG01_0081_D10.b : GTCGCTTCCAGGGCGGGTCTTCACACCGCCTCCCTCCCTCACCCCCTCCTCGGACAGGGT
PST01_0025_D10.b : GTCGCTTCCAGGGCGGGTCTTCACACCGCCTCCCTCCCTCACCCCCTCCTCGGACAGGGT
PST01_0035_B09.b : GTCGCTTCCAGGGCGGGTCTTCACACCGCCTCCCTCCCTCACCCCCTCCTCGGACAGGGT
KDN01_0082_E08.b : GTCGCTTCCAGGGCGGGTCTTCACACCGCCTCCCTCCCTCACCCCCTCCTCGGACAGGGT


20110601C-009187 : ATTCCAAGCCCACCGTCTTCTGGGGGGATTCATTTTCTCAGAAGTTGGGATCCTCAGGTC
                   ---------+---------+---------+---------+---------+---------+ 712
SMG01_0081_D10.b : ATTCCAAGCCCACCGTCTTCTGGGGGGATTCATTTTCTCAGAAGTTGGGATCCTCAGGTC
PST01_0025_D10.b : ATTCCAAGCCCACCGTCTTCTGGGGGGATTCATTTTCTCAGAAGTTGGGATCCTCAGGTC
PST01_0035_B09.b : ATTCCAAGCCCACCGTCTTCTGGGGGGATTCATTTTCTCAGAAGTTGGGATCCTCAGGTC
KDN01_0082_E08.b : ATTCCAAGCCCACCGTCTTCTGGGGGGATTCATTTTCTCAGAAGTTGGGATCCTCAGGTC


20110601C-009187 : ACGTGGAAAAACTACTCAAGATTGAGCTAGCGAGTCCACAGTTGCCTGTTTATAAAGACG
                   ---------+---------+---------+---------+---------+---------+ 772
SMG01_0081_D10.b : ACGTGGAAAAACTACTCAAGATTGAGCTAGCGAGTCCACAGTTGCCTGTTTATAAAGACG
PST01_0025_D10.b : ACGTGGAAAAACTACTCAAGATTGAGCTAGCGAGTCCACAGTTGCCTGTTTATAAAGACG
PST01_0035_B09.b : ACGTGGAAAAACTACTCAAGATTGAGCTAGCGAGTCCACAGTTGCCTGTTTATAAAGACG
KDN01_0082_E08.b : ACGTGGAAAAACTACTCAAGATTGAGCTAGCGAGTCCACAGTTGCCTGTTTATAAAGACG


20110601C-009187 : AAGGACATTCTCAGAAGTCACCGTCTTCGTCAGAACCCAGAGGAGCTCATCTGCTGGCAG
                   ---------+---------+---------+---------+---------+---------+ 832
SMG01_0081_D10.b : AAGGACATTCTCAGAAGTCACCGTCTTCGTCAGAACCCAGAGGAGCTCATCTGCTGGCA*
PST01_0025_D10.b : AAGGACATTCTCAGAAGTCACCGTCTTCGTCAGAACCCAGAGGAGCTCATCTGCTGGCAG
PST01_0035_B09.b : AAGGACATTCTCAGAAGTCACCGTCTTCGTCAGAACCCAGAGGAGCTCATCTGCTGGCAG
KDN01_0082_E08.b : AAGGACATTCTCAGAAGTCACCGTCTTCGTCAGAACCCAGAGGAGCTCATCTGCTGGCAG


20110601C-009187 : AAA*GGTGACAATGTTTCCCACGACAGTGGCAGAGGCTTCCCTGCACACCCTCTGGACCA
                   ---------+---------+---------+---------+---------+---------+ 891
SMG01_0081_D10.b : AAAAAGTGACCATGTTTCCCACGACAGTGGCAGAGcttccctggcaacctctggacattc
PST01_0025_D10.b : AAAAGGTGACAATGTTTCCCACGACAGTGGCAGAAGCTTCCCTGCACACCCTCTGGAAAC
PST01_0035_B09.b : AAAAGGTGACAATGTTTCCCACGACAGTGGCAGAGGCTTCCCTGCACACCCTCTGGACCA
KDN01_0082_E08.b : AAA*GGTGACAATGTTTCCCACGACAGTGGCAGAAGCTTCCCTGCACACCCTCTGGAACA


20110601C-009187 : CTCCCCAGCCCGCATCTCTCCCCACCCCCAGCTCCGCAGGGACGCCACCTGGGGCGACGC
                   ---------+---------+---------+---------+---------+---------+ 951
SMG01_0081_D10.b : ccaaccgggatttttccacccccagttcgcagggacgcacctgggggaacccccctgggg
PST01_0025_D10.b : ACTCCCAGCCCGCATCTCTCCCCACCCCCAGCTCCGCAGGGACGCCACCTGGGGCGACGC
PST01_0035_B09.b : CTCCCCAGCCCGCATCTCTCCCCACCCCCAGCTCCGCAGGGACGCCACCTGGGGCGACGC
KDN01_0082_E08.b : CTCCCCAGCCCGCATCTCTCCCCACCCCNAGCTCCGCAGGGACGCCACCTGGGGCGACGC


20110601C-009187 : CACCTGGGGGCGACCCCTTCGCCGCAACTGCAGCCACGGTCCCTGGCACGAACACCACTG
                   ---------+---------+---------+---------+---------+---------+ 1011
SMG01_0081_D10.b : gaccccttcgggccccggaacaaggtcctgggaaaccaaatgcgtttgacttcccttagg
PST01_0025_D10.b : CACCTGGGGGCGACCCCTCCGNNCGCACTGCAGCCACGGTCCCTGGCACGNNACACACTG
PST01_0035_B09.b : CACCTGG*GGCGACCCCCTCGCCGCACCTGCAGCCACGGTCCCTGGCACGAACACAACTG
KDN01_0082_E08.b : CACCTGGGGCGACCCccctcgcgcactgcagccacggtccctggcagacacaactgcggt


20110601C-009187 : CCGTTCTGACTTTTCACTTAGGGCTTTGACCGACT.........................
                   ---------+---------+---------+---------+---------+---------+ 1046
SMG01_0081_D10.b : gtttgacgactgaaggcccataaaacgggcccttggaaaatttccaccgccttaaaaagg
PST01_0025_D10.b : CCGTTCTGACTTTTCACTTAGGGCTTTGACCGACTgaaaggccnactanaagcagggccc
PST01_0035_B09.b : CCGTTCTGACTTccaccttttaggctttgaacgacttgaaaggcccactaaagcagggcc
KDN01_0082_E08.b : ctgacttcactttagggcttgacgactgaaagccactaaagcagggccctttgaaaattc


20110601C-009187 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1046
SMG01_0081_D10.b : aaagcgggaacctgcccttccctttcaaggggaaccccctccaaaaaacccctccaaaaa
PST01_0025_D10.b : tttggagaacatttcaantgnctctgaaccccgaagaatgcgggggaacctgccccggtg
PST01_0035_B09.b : ctttggaaaatttccacctgcctctgacaccgaagaagccgggaacctgccccgttgccc
KDN01_0082_E08.b : caactgctctgaacagaagatgcggggacctgcccntggcctggtcagtggatcctcgtt


20110601C-009187 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1046
SMG01_0081_D10.b : aaggagggcccccccctcttccaaagttttaagagaccccccttttttaaaagggccctt
PST01_0025_D10.b : cccctgttcaaggtggatcttncgntccaaaagccaccgctttcccgnaagatgggaggg
PST01_0035_B09.b : ttggtcaaggggatctttcgttccgaagcacccctttcccagaaaaggggaagccattcc
KDN01_0082_E08.b : cgatgcacgcctccagaaatggaggcatcaggccctctgacaagttcagaggtaccagcc


20110601C-009187 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1046
SMG01_0081_D10.b : ggaccccttttggggtgttccccccgcctttcccgggaaactcttaaacccccgaagaag
PST01_0025_D10.b : caattccagccgctctttgagcagtgtcttagaggcccaccggctttccctgaaaagggc
PST01_0035_B09.b : ggcccctttctgacaggttcaagaaggcaccacgcctttcctttaaaaggtccccctgga
KDN01_0082_E08.b : taccttaaaagctcctttggactgccttggttggtcctcccggctgtccttaagaactct


20110601C-009187 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1046
SMG01_0081_D10.b : gggggttattttagggtctttcccggggaaaaaattttaaattattccgcgccgggtttg
PST01_0025_D10.b : cccccgtggaaccggcctttggggttggccctccaccgcctgttcctggggaaacgcctc
PST01_0035_B09.b : accggctttcgggtttggtcctcccccgcccttcctctgggaaaacctctcaattccccg
KDN01_0082_E08.b : aacccccggaaggccgggttatttttagggtccctactgggaaaagttttgaaatttata


20110601C-009187 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1046
SMG01_0081_D10.b : tgtggt                                                     
PST01_0025_D10.b : taaacctccccgaaagtctcnggccgttattttcaggggctcttnactctgggaaagaat
PST01_0035_B09.b : cgaaaggcaccgggccgtttattaaggggaccctttcacttggggaaaaaaggtctcaat
KDN01_0082_E08.b : cccgggttctcttttaagtttaatagaagccaccatttttctagggaacgagggtttata


20110601C-009187 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1046
SMG01_0081_D10.b :                                                             
PST01_0025_D10.b : gtttgaaacaatttaataccgcggggtttggttgtgataaggttctattgagagagg  
PST01_0035_B09.b : caattttaataccccggggaatttcttatttat                          
KDN01_0082_E08.b : acacaagtcc