[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-009197
Length:
952
Sequence:
[FASTA format sequence]
CTCCTTGCTT CCTCCGCACC TCACGGCCCT GCCTCTCCCT TCCCAGGGGC TCCTGAGCTT
CGCAGAGTCA GCAAACTTGT CTCTTAGCGT TTACTTCGAT GCTCCTGGCA GGCCAGCTAT
CTTTGCCATC GAGGACACTC TGCTGGATGG CCACTTTGTT CTGGCCACGC TCTCGGAGCC
GGACCCGCAC TCCCAGGATC TGCGTTCCTC AGAGCTCCAG AGGCCAGCAC CTCAGCTTCA
GGCTCACAGC ACACCCCACC TGGATGACTT TGCCGCGGAC GACATTGACT CTTATATGAT
CGCCATGGAG ACCACTGTGG GCAGTGAGGC TTCCCGGGCC CTGCCCTCCG ACTCCCTTTC
TCCTGGCCTC CAAGCCCTCT GCAGCCCTGG CCCTGACTCA GAGGAGGAAG AGGACGACAC
TGAGCCCAGC ACAGTGCCTG GGACACCTCC ACCCAAGAAG TTCCGCTCGC TGTTCTTCGG
CTCCATCCTG GCCCCCACAC ACTCTCCCCA GGGCCCCAGC CCTGTGCTGG CTGAAGATAG
TGAGGGTGAA GGCTGAGCCC CGAAGTCCGG CGTTGGGAAG ACTGGACCAG ATGAAGCCCC
AGCCACCCCC TCTCCCAGCG CCAGCCGTGG GTGGGGACGG CTCTTCTCCT TGGCAGGTGG
TAAAGGTGGG CCCTGCTGGA GCTGAGCTGG CTGGTCCTGC TACTGTCCCG CGGGCCTTTC
CTGGGTATCT GACCCGCCTG GGTCCTGTCA TCTTCCTCCA GCACCGCACT TCCCCACGCC
CTGCCCATCA TGTCTGTTCC AGGCTTGGTG CTGAGCTGCC ACCTGCAGGA GAGGTCCCTA
ACCACCTCAT CCACGCCTTG TGGCCCAGGC TGGGGGCTGC CTTCTTCACA CCCACCTCCC
TAAGAAAAAA AATCATATTG GGGCTGCTGG CCTCTGCTGA TCAACCCCTG CT
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | RAD9A | cell cycle checkpoint control protein RAD9A isoform 2 [Homo sapiens]. | 239 | 4e-63 | |
![]() |
![]() | RAD9A | cell cycle checkpoint control protein RAD9A isoform 1 [Homo sapiens]. | 239 | 4e-63 | |
![]() |
![]() | RAD9B | cell cycle checkpoint control protein RAD9B [Homo sapiens]. | 51.6 | 1e-06 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | Rad9 | cell cycle checkpoint control protein RAD9A [Mus musculus]. | 209 | 3e-54 | |
![]() |
![]() | Rad9b | cell cycle checkpoint control protein RAD9B [Mus musculus]. | 57.4 | 2e-08 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC483696 | PREDICTED: similar to RAD9 homolog [Canis familiaris]. | 238 | 6e-63 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | RAD9B | cell cycle checkpoint control protein RAD9B [Bos taurus]. | 52.4 | 6e-07 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | RAD9A | PREDICTED: cell cycle checkpoint control protein RAD9A [Sus scrofa]. | 300 | 1e-81 |
|
|
20110601C-009197 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
SPL01_0050_A10.b : nnnnnnggcatggactatnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TES01_0081_E01.b :
THY01_0074_G12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TES01_0098_A08.b :
TES01_0080_A02.b :
20110601C-009197 : ..........................CTCCTTGCTTCCTCCGCACCTCACGGCCCTGCCT
---------+---------+---------+---------+---------+---------+ 34
SPL01_0050_A10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxCTCCTTGCTTCCTCCGCACCTCACGGCCCTGCCT
TES01_0081_E01.b : ctgcgttggctctggctCTTGCTTCCTCCGCACCTCACGGCCCTGCCT
THY01_0074_G12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTGCTTCCTCCGCACCTCACGGCCCTGCCT
TES01_0098_A08.b : ttttttcacgtggctatggctCTTGCTTCCTCC*CACCTCACGGCCCTGCCT
TES01_0080_A02.b : tttcccgcgttggctctgg
20110601C-009197 : CTCCCTTCCCAGGGGCTCCTGAGCTTCGCAGAGTCAGCAAACTTGTCTCTTAGCGTTTAC
---------+---------+---------+---------+---------+---------+ 94
SPL01_0050_A10.b : CTCCCTTCCCAGGGGCTCCTGAGCTTCGCAGAGTCAGCAAACTTGTCTCTTAGCGTTTAC
TES01_0081_E01.b : CTCCCTTCCCAGGGGCTCCTGAGCTTCGCAGAGTCAGCAAACTAGTCTCTTAGCGTTTAC
THY01_0074_G12.b : CTCCCTTCCCAGGGGCTCCTGAGCTTCGCAGAGTCAGCAAACTTGTCTCTTAGCGTTTAC
TES01_0098_A08.b : CTCCCTTCCCAGGGGCTCCTGAGCTTCGCAGAGTCAGCAAACTAGTCTCTTAGCGTTTAC
TES01_0080_A02.b : ctctccttCCAGGGGCTCCTGAGCTTCGCAGAGTCAGCAAACTTGTCTCTTAGCGTTTAC
20110601C-009197 : TTCGATGCTCCTGGCAGGCCAGCTATCTTTGCCATCGAGGACACTCTGCTGGATGGCCAC
---------+---------+---------+---------+---------+---------+ 154
SPL01_0050_A10.b : TTCGATGCTCCTGGCAGGCCAGCTATCTTTGCCATCGAGGACACTCTGCTGGATGGCCAC
TES01_0081_E01.b : TTCGATGCTCCTGGCAGGCCAGCTATCTTTGCCATCGAGGACACTCTGCTGGATGGCCAC
THY01_0074_G12.b : TTCGATGCTCCTGGCAGGCCAGCTATCTTTGCCATCGAGGACACTCTGCTGGATGGCCAC
TES01_0098_A08.b : TTCGATGCTCCTGGCAGGCCAGCTATCTTTGCCATCGAGGACACTCTGCTGGATGGCCAC
TES01_0080_A02.b : TTCGATGCTCCTGGCAGGCCAGCTATCTTTGCCATCGAGGACACTCTGCTGGATGGCCAC
20110601C-009197 : TTTGTTCTGGCCACGCTCTCGGAGCCGGACCCGCACTCCCAGGATCTGCGTTCCTCAGAG
---------+---------+---------+---------+---------+---------+ 214
SPL01_0050_A10.b : TTTGTTCTGGCCACGCTCTCGGAGCCGGACCCGCACTCCCAGGATCTGCGTTCCTCAGAG
TES01_0081_E01.b : TTTGTTCTGGCCACGCTCTCGGAGCCGGACCCGCACTCCCAGGATCTGCGTTCCTCAGAG
THY01_0074_G12.b : TTTGTTCTGGCCACGCTCTCGGAGCCGGACCCGCACTCCCAGGATCTGCGTTCCTCGGAG
TES01_0098_A08.b : TTTGTTCTGGCCACGCTCTCGGAGCCGGACCCGCACTCCCAGGATCTGCGTTCCTCAGAG
TES01_0080_A02.b : TTTGTCCTGGCCACGCTCTCGGAGCCGGACCCGCACTCCCAGGATCTGCGTTCCTCGGAG
20110601C-009197 : CTCCAGAGGCCAGCACCTCAGCTTCAGGCTCACAGCACACCCCACCTGGATGACTTTGCC
---------+---------+---------+---------+---------+---------+ 274
SPL01_0050_A10.b : CTCCAGAGGCCAGCACCTCAGCTTCAGGCTCACAGCACACCCCACCTGGATGACTTTGCC
TES01_0081_E01.b : CTCCAGAGGCCAGCACCTCAGCTTCAGGCTCACAGCACACCCCACCTGGATGACTTTGCC
THY01_0074_G12.b : CTCCAGAGGCCAGCACCTCAGCTTCAGGCTCACAGCACACCCCACCTGGATGACTTTGCC
TES01_0098_A08.b : CTCCAGAGGCCAGCACCTCAGCTTCAGGCTCACAGCACACCCCACCTGGATGACTTTGCC
TES01_0080_A02.b : CTCCAGAGGCCAGCACCTCAGCTTCAGGCTCACAGCACACCCCACCTGGATGACTTTGCC
20110601C-009197 : GCGGACGACATTGACTCTTATATGATCGCCATGGAGACCACTGTGGGCAGTGAGGCTTCC
---------+---------+---------+---------+---------+---------+ 334
SPL01_0050_A10.b : GCGGACGACATTGACTCTTATATGATCGCCATGGAGACCACTGTGGGCAGTGAGGCTTCC
TES01_0081_E01.b : GCGGACGACATTGACTCTTATATGATCGCCATGGAGACCACTGTGGGCAGTGAGGCTTCC
THY01_0074_G12.b : GCGGACGACATTGACTCTTATATGATCGCCATGGAGACCACTGTGGGCAGTGAGGCTTCC
TES01_0098_A08.b : GCGGACGACATTGACTCTTATATGATCGCCATGGAGACCACTGTGGGCAGTGAGGCTTCC
TES01_0080_A02.b : GCGGACGACATTGACTCTTATATGATCGCCATGGAGACCACTGTGGGCAGTGAGGCTTCC
20110601C-009197 : CGGGCCCTGCCCTCCGACTCCCTTTCTCCTGGCCTCCAAGCCCTCTGCAGCCCTGGCCCT
---------+---------+---------+---------+---------+---------+ 394
SPL01_0050_A10.b : CGGGCCCTGCCCTCCGACTCCCTTTCTCCTGGCCTCCAAGCCCTCTGCAGCCCTGGCCCT
TES01_0081_E01.b : CGGGCCCTGCCCTCCGACTCCCTTTCTCCTGGCCTCCAAGCCCTCTGCAGCCCTGGCCCT
THY01_0074_G12.b : CGGGCCCTGCCCTCCGACTCCCTTTCTCCTGGCCTCCAAGCCCTCTGCAGCCCTGGCCCT
TES01_0098_A08.b : CGGGCCCTGCCCTCCGACTCCCTTTCTCCTGGCCTCCAAGCCCTCTGCAGCCCTGGCCCT
TES01_0080_A02.b : CGGGCCCTGCCCTCCGACTCCCTTTCTCCTGGCCTCCAAGCCCTCTGCAGCCCTGGCCCT
20110601C-009197 : GACTCAGAGGAGGAAGAGGACGACACTGAGCCCAGCACAGTGCCTGGGACACCTCCACCC
---------+---------+---------+---------+---------+---------+ 454
SPL01_0050_A10.b : GACTCAGAGGAGGAAGAGGACGACACTGAGCCCAGCACAGTGCCTGGGACACCTCCACCC
TES01_0081_E01.b : GACTCAGAGGAGGAAGAGGACGACACTGAGCCCAGCACAGTGCCTGGGACACCTCCACCC
THY01_0074_G12.b : GACTCAGAGGAGGAAGAGGACGACACTGAGCCCAGCACAGTGCCTGGGACACCTCCACCC
TES01_0098_A08.b : GACTCAGAGGAGGAAGAGGACGACACTGAGCCCAGCACAGTGCCTGGGACACCTCCACCC
TES01_0080_A02.b : GACTCAGAGGAGGAAGAGGACGACACTGAGCCCAGCACAGTGCCTGGGACACCTCCACCC
20110601C-009197 : AAGAAGTTCCGCTCGCTGTTCTTCGGCTCCATCCTGGCCCCCACACACTCTCCCCAGGGC
---------+---------+---------+---------+---------+---------+ 514
SPL01_0050_A10.b : AAGAAGTTCCGCTCGCTGTTCTTCGGCTCCATCCTGGCCCCCACACACTCTCCCCAGGGC
TES01_0081_E01.b : AAGAAGTTCCGCTCGCTGTTCTTCGGCTCCATCCTGGCCCCCACACACTCTCCCCAGGGC
THY01_0074_G12.b : AAGAAGTTCCGCTCGCTGTTCTTCGGCTCCATCCTGGCCCCCACACACTCTCCCCAGGGC
TES01_0098_A08.b : AAGAAGTTCCGCTCGCTGTTCTTCGGCTCCATCCTGGCCCCCACACACTCTCCCCAGGGC
TES01_0080_A02.b : AAGAAGTTCCGCTCGCTGTTCTTCGGCTCCATCCTGGCCCCCACACACTCTCCCCAGGGC
20110601C-009197 : CCCAGCCCTGTGCTGGCTGAAGATAGTGAGGGTGAAGGCTGAGCCCCGAAGTCCGGCGTT
---------+---------+---------+---------+---------+---------+ 574
SPL01_0050_A10.b : CCCAGCCCTGTGCTGGCTGAAGATAGTGAGGGTGAAGGCTGAGCCCCGAAGTCCGGCGTT
TES01_0081_E01.b : CCCAGCCCTGTGCTGGCTGAAGATAGTGAGGGTGAAGGCTGAGCCCCGAAGTCCGGCGTT
THY01_0074_G12.b : CCCAGCCCTGTGCTGGCTGAAGATAGTGAGGGTGAAGGCTGAGCCCCGAAGTCCGGCGTT
TES01_0098_A08.b : CCCAGCCCTGTGCTGGCTGAAGATAGTGAGGGTGAAGGCTGAGCCCCGAAGTCCGGCGTT
TES01_0080_A02.b : CCCAGCCCTGTGCTGGCTGAAGATAGTGAGGGTGAAGGCTGAGCCCCGAAGTCCGGCGTT
20110601C-009197 : GGGAAGACTGGACCAGATGAAGCCCCAGCCACCCCCTCTCCCAGCGCCAGCCGTGGGTGG
---------+---------+---------+---------+---------+---------+ 634
SPL01_0050_A10.b : GGGAAGACTGGACCAGATGAAGCCCCAGCCACCCCCTCTCCCAGCGCCAGCCGTGGGTGG
TES01_0081_E01.b : GGGAAGACTGGACCAGATGAAGCCCCAGCCACCCCCTCTCCCAGCGCCAGCCGTGGGTGG
THY01_0074_G12.b : GGGAAGACTGGACCAGATGAAGCCCCAGCCACCCCCTCTCCCAGCGCCAGCCGTGGGTGG
TES01_0098_A08.b : GGGAAGACTGGACCAGATGAAGCCCCAGCCACCCCCTCTCCCAGCGCCAGCCGTGGGTGG
TES01_0080_A02.b : GGGAAGACTGGACCAGATGAAGCCCCAGCCACCCCCTCTCCCAGCGCCAGCCGTGGGTGG
20110601C-009197 : GGACGGCTCTTCTCCTTGGCAGGTGGTAAAGGTGGGCCCTGCTGGAGCTGAGCTGGCTGG
---------+---------+---------+---------+---------+---------+ 694
SPL01_0050_A10.b : GGACGGCTCTTCTCCTTGGCAGGTGGTAAAGGTGGGCCCTGCTGGAACTGAGCTGGCTGG
TES01_0081_E01.b : GGACGGCTCTTCTCCTTGGCAGGGGG**AAAGTGGGCCCTGCTGGAACTGAACTGGCTGG
THY01_0074_G12.b : GGACGGCTCTTCTCCTTGGCAGGTGGTAAAGATGGGCCCTGCTGGAGCTGAGCTGGCTGG
TES01_0098_A08.b : GGACGGCTCTTCTCCTTGGCAGGTGGT*AAGGTGGGCCCTGCTGGAGCTGAGCTGGCTGG
TES01_0080_A02.b : GGACGGCTCTTCTCCTTGGCAGGTGGTAAAGGTGGGCCCTGCTTGAACTGAGCTGGTTGG
20110601C-009197 : TCCTGCTACTGTCCCGCGGGCCTTTCC*TGGGTATCTGACCCGCCTGGGTCCTGTCATCT
---------+---------+---------+---------+---------+---------+ 753
SPL01_0050_A10.b : GCCTGCTACTGTCCCGGGGGCCTTTCCCTGGGTATCTGACCCGCCTGGGTCCTGgtaatc
TES01_0081_E01.b : TCCTGCTACTGTCCCCGCGGGCCTTTCCTGGGTATCTGACCCGCCTGGGTCtggtcttct
THY01_0074_G12.b : TCCTGCTACTGTCCCGCGGGCCTTTCCTGGGTATCCTGACCCGCCTGGGTCCTGTCATCT
TES01_0098_A08.b : TCCTGCTACTGTCCCGCGGGCCTTTCC*TGGGTATCTGACCCGCCTGGGTCCTGTCATCT
TES01_0080_A02.b : TCTTGCTACTGTCCCGCGGGC**TTTCCTGGGTATCTGAACCGCCGGGGCCCTGTCATCT
20110601C-009197 : TCCTCCAGCACCGCACTTCCCCACGCCCTGCCCATCATGTCTGTTCCAGGCTTGGTGCTG
---------+---------+---------+---------+---------+---------+ 813
SPL01_0050_A10.b : ttcctccagcaacggattcccccaaagccctgccaatcatgtctgtttcaaggcttgggg
TES01_0081_E01.b : tcctccaaaacggatttccccagccctggcaatcatgtttgttccaggccttggtgctaa
THY01_0074_G12.b : TCCTCCAGCACCGCACTTCCCCACCCCCTGCCCATCATGTCTGTTCCAGGCTTGGTGCTG
TES01_0098_A08.b : TCCTCCAGCACCGCACT*CCCCACGCCCTGGCAATCATGTCTGTTCCAGGCTTGGTGCTG
TES01_0080_A02.b : TCCTCCAGGAACGCACTCCCCAagcctggcaatcagtgttgttccaggctggggggctaa
20110601C-009197 : AGCTGCCACCTGCAGGAGAGGTCCCTAACCACCTCATCCACGCCTTGTGGCCCAGGCTGG
---------+---------+---------+---------+---------+---------+ 873
SPL01_0050_A10.b : gctgaacctggccacttgccaggaaaaggtccctaaaccaccctcattctcccctttgtg
TES01_0081_E01.b : cctgcccccgcagagaaagggccttaaccccttcctccaccttggtggccaatggtgggg
THY01_0074_G12.b : AACTGCCACCTGCAGGAAAGGTCCCTAACCACCTCATTCACGCCTTGTGGCCCAGGCTGG
TES01_0098_A08.b : AGCTGCCACCTGCAGGAGAGGTCCCTAACCACCTCATCCACGC*TTGTGGCCCAGGCTGG
TES01_0080_A02.b : cctccccccggcgggaaaggtccttaacccctccacccacccttggggcccaggttgggg
20110601C-009197 : GGGCTGCCTTCTTCACACCCACCTCCCTAAGAAAAAAAATCATATTGGGGCTGCTGGCCT
---------+---------+---------+---------+---------+---------+ 933
SPL01_0050_A10.b : ggcccagggtggggggcctgccctttttcctaaacacaacctcccttaaaaaaaaaaaat
TES01_0081_E01.b : cctgcctttttccaaaccccctccttaaaaaaaaaaatcctattgggggtggttggcccc
THY01_0074_G12.b : GGccctgccttcccccaccccaccctccctaaaaaaaaaaa
TES01_0098_A08.b : GGGCTGCCTTCTTCACACCCACCTCCCTAAGAAAAAAAATCATATTGGGGCTGCTGGCCT
TES01_0080_A02.b : gctggccttccccaaccccccccccttaaaaaaaaaacccaaaggggggttgctggcccc
20110601C-009197 : CTGCTGATCAACCCCTGCT.........................................
---------+---------+---------+---------+---------+---------+ 952
SPL01_0050_A10.b : tccattattggggggcttgcttgggccctctggccgtaattccacccccttgttgtgcaa
TES01_0081_E01.b : ctgctgtatcccccccgggcgtccaattaaaaacttgtcctgccccctctaattgggggc
THY01_0074_G12.b :
TES01_0098_A08.b : CTGCTGATCAACCCCTGCTtgcaaatctggactggtctgccctcaaattgtgggcccccc
TES01_0080_A02.b : tgtgtatccacccctgttgcaaatttgaaccttgccgggccccaaattgggggccccccc
20110601C-009197 : ............................................................
---------+---------+---------+---------+---------+---------+ 952
SPL01_0050_A10.b : aattatggaaccgtggtcctggccccttcaaaatttgtgtggatactcctcttttgtaaa
TES01_0081_E01.b : cacccctcttaaaaatcccctgggggcggaaaggtaaattttgccttcatctcccaaaat
THY01_0074_G12.b :
TES01_0098_A08.b : ctgaaatgcccggtggcggaactgtaaatttgcctaactttctaaaaacccccggggggc
TES01_0080_A02.b : ctaaaaacccccgggggggaaaaagaatttttctttatttcccaaaaaaccccgggggcg
20110601C-009197 : ............................................................
---------+---------+---------+---------+---------+---------+ 952
SPL01_0050_A10.b : atatcgct
TES01_0081_E01.b : ccccctggggtgggggccgggatcccccacagggacccctcttgaaccctaaacattggg
THY01_0074_G12.b :
TES01_0098_A08.b : ggcctgaaatcccaagggaccctattggccctaacagttggctggggttttcctgggcgg
TES01_0080_A02.b : gggcggggacctccggggccccttgggcccttaactgtggggggggtttccccggggggg
20110601C-009197 : ............................................................
---------+---------+---------+---------+---------+---------+ 952
SPL01_0050_A10.b :
TES01_0081_E01.b : tctggagagtctctcctcgctggggagcccggtccccatatgagtccctcccaagggtct
THY01_0074_G12.b :
TES01_0098_A08.b : ggccccggccccaaaggccccccaggggtctctgggcaaaggggttcccggccccagttt
TES01_0080_A02.b : ggccctgtccaaaagccccccccagggcctttgggaaacagggtcctccccctctttttg
20110601C-009197 : ............................................................
---------+---------+---------+---------+---------+---------+ 952
SPL01_0050_A10.b :
TES01_0081_E01.b : cttgggtcataaagttgtttcccatcttttcactgtttgtggaaagagtgaaatcaaacc
THY01_0074_G12.b :
TES01_0098_A08.b : tggaaaaaggaaacaaaggccggggaaaatcaccctttacttttttcaaaaccacaaggt
TES01_0080_A02.b : ttgaaaaggaaaaaagaacggtggggaaaaccctttttgttctttattaaaaaaaaatgg
20110601C-009197 : ............................................................
---------+---------+---------+---------+---------+---------+ 952
SPL01_0050_A10.b :
TES01_0081_E01.b : tcttgggtgagagataccctctttatatttttatatataaaacaa
THY01_0074_G12.b :
TES01_0098_A08.b : tgccccgaatcggtcgccccccctaggccaacaggggggaaaccaaattggcccgtttgt
TES01_0080_A02.b : ttgtctccaatatagcggtgcccttcgggtataggagggtggacacacctgttctgtttt
20110601C-009197 : ............................................................
---------+---------+---------+---------+---------+---------+ 952
SPL01_0050_A10.b :
TES01_0081_E01.b :
THY01_0074_G12.b :
TES01_0098_A08.b : cccgaggggccccc
TES01_0080_A02.b : gtttggtggcaccttccccctaatttttgcatatataggaggggggaggacacctggggg
20110601C-009197 : ............................................................
---------+---------+---------+---------+---------+---------+ 952
SPL01_0050_A10.b :
TES01_0081_E01.b :
THY01_0074_G12.b :
TES01_0098_A08.b :
TES01_0080_A02.b : ttgactttgtaataaaaaan