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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-009456

Length: 1,050

Sequence [FASTA format sequence]
AGAGGGGAGC TGGTCGCAGG CTAGGCAACC TCTAGTCGGT CTCTGGGCCG GGCGTGTCCT
CCCAGAGGCG GCACCATGGA GCGCTCTCCT GCAGACCGCT CCAGTCCCGT GGACCAACCC
TACGCTCCCT CCGACCCCCC TGACCAGCCC CCCGTTGCTC CCACAAAGCC GGACCAGAGT
TCTGGGAACC AACCTGCTGG ACCAGGCGCG GCGGGTGAGG CCCTGGCTGT GCTGACTTCC
TTCGGGCGGC GGTTGCTGGT GCTGGTGCCG GTGTACCTAG CCGGGGCCAT GGGACTCAGC
GTGGGTTTCG TGCTCTTCGG CCTCGCCCTC TACCTGGGCT GGCGCCGGGT CCGCGAGGAG
AAAGAACGGA GCCTTCGAGT AGCGCAGCAG CTCCTGGAGG ATGAGGAGCG GCTCACGGCG
AAAACTCTTT ACATGAGCCA GCGAGAGCTA CCTGCCTGGG TCAGCTTCCC AGATGTGGAA
AAGGCCGAGT GGCTAAATAA GATTGTGGCT CAGGTCTGGC CCTTCCTGGG CCAGTATATG
GAGAAGCTTT TGGCTGAAAC TGTGGCCCCA GCTGTTCGAG GATCCAACCC CCACTTGCAG
ACATTTACAT TTACACGAGT GGAACTGGGT GAAAAGCCAC TGCGCATCCT TGGAGTCAAA
GTTCACCCTG GTCAGAGAAA AGAGCAGATC CTGCTGGACT TGAACATCAG CTATGTAGGT
GATGTACAGA TTGATGTGGA AGTGAAGAAA TATTTCTGCA AAGCAGGAGT CAAGGGCATG
CAGCTACATG GTGTCTTACG GGTGATTCTT GAACCACTCA TTGGGGACCT TCCTATTGTG
GGGGCTGTGT CGATGTTCTT TATCCGGCGG CCGACCCTAG ATATTAACTG GACGGGGATG
ACCAACCTCC TGGATATCCC AGGACTCAGC TCCCTCTCTG ACACCATGAT CATGGATTCC
ATCGCTGCCT TCCTTGTGTT ANCCNACCGA TATTGGTGCC CTTGTGCCCT GACTTCAAGA
CGTGGCCAGT TGCGTTCCCT CTTCCAGGGG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinESYT1extended synaptotagmin-1 isoform 1 [Homo sapiens]. 494e-140O
Contig/Assembly ProteinESYT1extended synaptotagmin-1 isoform 2 [Homo sapiens]. 494e-140O
Contig/Assembly ProteinESYT2extended synaptotagmin-2 [Homo sapiens]. 2923e-79
Contig/Assembly ProteinESYT3extended synaptotagmin-3 [Homo sapiens]. 2341e-61O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinEsyt1extended synaptotagmin-1 [Mus musculus]. 480e-136O
Contig/Assembly ProteinEsyt2extended synaptotagmin-2 [Mus musculus]. 2893e-78O
Contig/Assembly ProteinEsyt3extended synaptotagmin-3 [Mus musculus]. 2441e-64O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC474397PREDICTED: similar to family with sequence similarity 62 (C2 domain containing), member A [Canis familiaris]. 3418e-94O
Contig/Assembly ProteinLOC485686PREDICTED: similar to chr3 synaptotagmin [Canis familiaris]. 2411e-63O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinESYT1extended synaptotagmin-1 [Bos taurus]. 496e-140O
Contig/Assembly ProteinESYT3PREDICTED: extended synaptotagmin-like protein 3 [Bos taurus]. 2486e-66O
Contig/Assembly ProteinESYT3PREDICTED: extended synaptotagmin-like protein 3 [Bos taurus]. 2486e-66O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100519485PREDICTED: extended synaptotagmin-1-like isoform 2 [Sus scrofa]. 522e-148O
Contig/Assembly ProteinLOC100519485PREDICTED: extended synaptotagmin-1-like isoform 1 [Sus scrofa]. 522e-148O
Contig/Assembly ProteinESYT3PREDICTED: extended synaptotagmin-3 [Sus scrofa]. 2453e-65O
Contig/Assembly ProteinLOC100525494PREDICTED: WD repeat-containing protein 60-like [Sus scrofa]. 53.52e-07O


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
PST010033F11PST01_0033_F11.bFS699453 
PST010038B09PST01_0038_B09.bFS699787 
PST010087F06PST01_0087_F06.bFS703748 
THY010066B03THY01_0066_B03.bBP160839 AK351709

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
92C200.500WNGCA/A
G200.500GGA/G


Alignment:      TOP

20110601C-009456 : .................................................AGAGGGGAGCT
---------+---------+---------+---------+---------+---------+ 11
PST01_0087_F06.b : nnnnncctgcgttggctctgggtAGAGGGGAGCT
PST01_0038_B09.b : gctg
PST01_0033_F11.b : nnnaatcgctg
THY01_0066_B03.b : ggggctgttagtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-009456 : GGTCGCAGGCTAGGCAACCTCTAGTCGGTCTCTGGGCCGGGCGTGTCCTCCCAGAGGCGG
---------+---------+---------+---------+---------+---------+ 71
PST01_0087_F06.b : GGTCGCAGGCTAGGCAACCTCTAGTCGGTCTCTGGGCCGGGCGTGTCCTCCCAGAGGCGG
PST01_0038_B09.b : ttggcgcaggctaggcACCTCTAGTCGGTCTCTGGGCCGGGCGTGTCCTCCCAGAGGCGG
PST01_0033_F11.b : tggcggcaggctaggcACCTCTAGTCGGTCTCTGGGCCGGGCGTGTCCTCCCAGAGGCGG
THY01_0066_B03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxGTCTCTGGGCCGGGCGTGTCCTCCCAGAGGCGG
20110601C-009456 : CACCATGGAGCGCTCTCCTGCAGACCGCTCCAGTCCCGTGGACCAACCCTACGCTCCCTC
---------+---------+---------+---------+---------+---------+ 131
PST01_0087_F06.b : CACCATGGAGCGCTCTCCTGGAGACCGCTCCAGTCCCGTGGACCAACCCTACGCTCCCTC
PST01_0038_B09.b : CACCATGGAGCGCTCTCCTGCAGACCGCTCCAGTCCCGTGGACCAACCCTACGCTCCCTC
PST01_0033_F11.b : CACCATGGAGCGCTCTCCTGCAGACCGCTCCAGTCCCGTGGACCAACCCTACGCTCCCTC
THY01_0066_B03.b : CACCATGGAGCGCTCTCCTGGAGACCGCTCCAGTCCCGTGGACCAACCCTACGCTCCCTC
20110601C-009456 : CGACCCCCCTGACCAGCCCCCCGTTGCTCCCACAAAGCCGGACCAGAGTTCTGGGAACCA
---------+---------+---------+---------+---------+---------+ 191
PST01_0087_F06.b : CGACCCCCCTGACCAGCCCCCCGTTGCTCCCACAAAGCCGGACCAGAGTTCTGGGAACCA
PST01_0038_B09.b : CGACCCCCCTGACCAGCCCCCCGTTGCTCCCACAAAGCCGGACCAGAGTTCTGGGAACCA
PST01_0033_F11.b : CGACCCCCCTGACCAGCCCCCCGTTGCTCCCACAAAGCCGGACCAGAGTTCTGGGAACCA
THY01_0066_B03.b : CGACCCCCCTGACCAGCCCCCCGTTGCTCCCACAAAGCCGGACCAGAGTTCTGGGAACCA
20110601C-009456 : ACCTGCTGGACCAGGCGCGGCGGGTGAGGCCCTGGCTGTGCTGACTTCCTTCGGGCGGCG
---------+---------+---------+---------+---------+---------+ 251
PST01_0087_F06.b : ACCTGCTGGACCAGGCGCGGCGGGTGAGGCCCTGGCTGTGCTGACTTCCTTCGGGCGGCG
PST01_0038_B09.b : ACCTGCTGGACCAGGCGCGGCGGGTGAGGCCCTGGCTGTGCTGACTTCCTTCGGGCGGCG
PST01_0033_F11.b : ACCTGCTGGACCAGGCGCGGCGGGTGAGGCCCTGGCTGTGCTGACTTCCTTCGGGCGGCG
THY01_0066_B03.b : ACCTGCTGGACCAGGCGCGGCGGGTGAGGCCCTGGCTGTGCTGACTTCCTTCGGGCGGCG
20110601C-009456 : GTTGCTGGTGCTGGTGCCGGTGTACCTAGCCGGGGCCATGGGACTCAGCGTGGGTTTCGT
---------+---------+---------+---------+---------+---------+ 311
PST01_0087_F06.b : GTTGCTGGTGCTGGTGCCGGTGTACCTAGCCGGGGCCATGGGACTCAGCGTGGGTTTCGT
PST01_0038_B09.b : GTTGCTGGTGCTGGTGCCGGTGTACCTAGCCGGGGCCATGGGACTCAGCGTGGGTTTCGT
PST01_0033_F11.b : GTTGCTGGTGCTGGTGCCGGTGTACCTAGCCGGGGCCATGGGACTCAGCGTGGGTTTCGT
THY01_0066_B03.b : GTTGCTGGTGCTGGTGCCGGTGTACCTAGCCGGGGCCATGGGACTCAGCGTGGGTTTCGT
20110601C-009456 : GCTCTTCGGCCTCGCCCTCTACCTGGGCTGGCGCCGGGTCCGCGAGGAGAAAGAACGGAG
---------+---------+---------+---------+---------+---------+ 371
PST01_0087_F06.b : GCTCTTCGGCCTCGCCCTCTACCCGGGCTGGCGCCGGGTCCGCGAGGAGAAAGAACGGAG
PST01_0038_B09.b : GCTCTTCGGCCTCGCCCTCTACCTGGGCTGGCGCCGGGTCCGCGAGGAGAAAGAACGGAG
PST01_0033_F11.b : GCTCTTCGGCCTCGCCCTCTACCTGGGCTGGCGCCGGGTCCGCGAGGAGAAAGAACGGAG
THY01_0066_B03.b : GCTCTTCGGCCTCGCCCTCTACCTGGGCTGGCGCCGGGTCCGCGAGGAGAAAGAACGGAG
20110601C-009456 : CCTTCGAGTAGCGCAGCAGCTCCTGGAGGATGAGGAGCGGCTCACGGCGAAAACTCTTTA
---------+---------+---------+---------+---------+---------+ 431
PST01_0087_F06.b : CCTTCGAGTAGCGCAGCAGCTCCTGGAGGATGAGGAGCGGCTCACGGCGAAAACTCTTTA
PST01_0038_B09.b : CCTTCGAGTAGCGCAGCAGCTCCTGGAGGATGAGGAGCGGCTCACGGCGAAAACTCTTTA
PST01_0033_F11.b : CCTTCGAGTAGCGCAGCAGCTCCTGGAGGATGAGGAGCGGCTCACGGCGAAAACTCTTTA
THY01_0066_B03.b : CCTTCGAGTAGCGCAGCAGCTCCTGGAGGATGAGGAGCGGCTCACGGCGAAAACTCTTTA
20110601C-009456 : CATGAGCCAGCGAGAGCTACCTGCCTGGGTCAGCTTCCCAGATGTGGAAAAGGCCGAGTG
---------+---------+---------+---------+---------+---------+ 491
PST01_0087_F06.b : CATGAGCCAGCGAGAGCTACCTGCCTGGGTCAGCTTCCCAGATGTGGAAAAGGCCGAGTG
PST01_0038_B09.b : CATGAGCCAGCGAGAGCTACCTGCCTGGGTCAGCTTCCCAGATGTGGAAAAGGCCGAGTG
PST01_0033_F11.b : CATGAGCCAGCGAGAGCTACCTGCCTGGGTCAGCTTCCCAGATGTGGAAAAGGCCGAGTG
THY01_0066_B03.b : CATGAGCCAGCGAGAGCTACCTGCCTGGGTCAGCTTCCCAGATGTGGAAAAGGCCGAGTG
20110601C-009456 : GCTAAATAAGATTGTGGCTCAGGTCTGGCCCTTCCTGGGCCAGTATATGGAGAAGCTTTT
---------+---------+---------+---------+---------+---------+ 551
PST01_0087_F06.b : GCTAAATAAGATTGTGGCTCAGGTCTGGCCCTTCCTGGGCCAGTATATGGAGAAGCTTTT
PST01_0038_B09.b : GCTAAATAAGATTGTGGCTCAGGTCTGGCCCTTCCTGGGCCAGTATATGGAGAAGCTTTT
PST01_0033_F11.b : GCTAAATAAGATTGTGGCTCAGGTCTGGCCCTTCCTGGGCCAGTATATGGAGAAGCTTTT
THY01_0066_B03.b : GCTAAATAAGATTGTGGCTCAGGTCTGGCCCTTCCTGGGCCAGTATATGGAGAAGCTTTT
20110601C-009456 : GGCTGAAACTGTGGCCCCAGCTGTTCGAGGATCCAACCCCCACTTGCAGACATTTACATT
---------+---------+---------+---------+---------+---------+ 611
PST01_0087_F06.b : GGCTGAAACTGTGGCCCCAGCTGTTCGAGGATCCAACCCCCACTTGCAGACATTTACATT
PST01_0038_B09.b : GGCTGAAACTGTGGCCCCAGCTGTTCGAGGATCCAACCCCCACTTGCAGACATTTACATT
PST01_0033_F11.b : GGCTGAAACTGTGGCCCCAGCTGTTCGAGGATCCAACCCCCACTTGCAGACATTTACATT
THY01_0066_B03.b : GGCTGAAACTGTGGCCCCAGCTGTTCGAGGATCCAACCCCCACTTGCAGACATTTACATT
20110601C-009456 : TACACGAGTGGAACTGGGTGAAAAGCCACTGCGCATCCTTGGAGTCAAAGTTCACCCTGG
---------+---------+---------+---------+---------+---------+ 671
PST01_0087_F06.b : TACACGAGTGGAACTGGGTGAAAAGCCACTGCGCATCCTTGGAGTCAAAGTTCACCCTGG
PST01_0038_B09.b : TACACGAGTGGAACTGGGTGAAAAGCCACTGCGCATCCTTGGAGTCAAAGTTCACCCTGG
PST01_0033_F11.b : TACACGAGTGGAACTGGGTGAAAAGCCACTGCGCATCCTTGGAGTCAAAGTTCACCCTGG
THY01_0066_B03.b : TACACGAGTGGAACTGGGTGAAAAGCCACTGCGCATCCTTGGAGTCAAAGTTCACCCTGG
20110601C-009456 : TCAGAGAAAAGAGCAGATCCTGCTGGACTTGAACATCAGCTATGTAGGTGATGTACAGAT
---------+---------+---------+---------+---------+---------+ 731
PST01_0087_F06.b : TCAGAGAAAAGAGCAGATCCTGCTGGACTTGAACATCAGCTATGTAGGTGATGTACAGAT
PST01_0038_B09.b : TCAGAGAAAAGAGCAGATCCTGCTGGACTTGAACATCAGCTATGTAGGTGATGTACAGAT
PST01_0033_F11.b : TCAGAGAAAAGAGCAGATCCTGCTGGACTTGAACATCAGCTATGTAGGTGATGTACAGAT
THY01_0066_B03.b : TCAGAGAAAAGAGCAGATCCTGCTGGACTTGAACATCAGCTATGTAGGTGATGTACAGAT
20110601C-009456 : TGATGTGGAAGTGAAGAAATATTTCTGCAAAGCAGGAGTCAAGGGCATGCAGCTACATGG
---------+---------+---------+---------+---------+---------+ 791
PST01_0087_F06.b : TGATGTGGAAGTGAAGAAATATTTCTGCAAAGCAGGAGTCAAGGGCATGCAGCTACATGG
PST01_0038_B09.b : TGATGTGGAAGTGAAGAAATATTTCTGCAAAGCAGGAGTCAAGGGCATGCAGCTACATGG
PST01_0033_F11.b : TGATGTGGAAGTGAAGAAATATTTCTGCAAAGCAGGAGTCAAGGGCATGCAGCTACATGG
THY01_0066_B03.b : TGATGTGGAAGTGAAGAAATATTTCTGCAAAGCAGGAGTCAAGGGCATGCAGCTACATGG
20110601C-009456 : TGTCTTACGGGTGATTCTTGAACCACTCATTGGGGACCTTCCTATTGTGGGGGCTGTGTC
---------+---------+---------+---------+---------+---------+ 851
PST01_0087_F06.b : TGTCTTACGGGTGATTCTTGAACCACTCATTGGGGACCTTCCTATTGTGGGGGCTGTGTC
PST01_0038_B09.b : TGTCTTACGGGTGATTCTTGAACCACTCATTGGGGACCTTCCTATTGTGGGGGCTGTGTC
PST01_0033_F11.b : TGTCTTACGGGTGATTCTTGAACCACTCATTGGGGACCTTCCTATTGTGGGGGCTGTGTC
THY01_0066_B03.b : TGTCTTACGGGTGATTCTTGAACCACTCATTGGGGACCTTCCTATTGTGGGGGCTGTGTC
20110601C-009456 : GATGTTCTTTATCCGGCGGCCGACCCTAGATATTAACTGGACGGGGATGACCAACCTCCT
---------+---------+---------+---------+---------+---------+ 911
PST01_0087_F06.b : GATGTTCTTTATCCGGCGGCCGACCCTAGATATTAACTGGACGGGGATGACCAACCTCCT
PST01_0038_B09.b : GATGTTCTTTATCCGGCGGCCGACCCTAGATATTAACTGGACGGGGATGACCAACCTCCT
PST01_0033_F11.b : GATGTTCTTTATCCGGCGGCCGACCCTAGATATTAACTGGACGGGGATGACCAACCTCCT
THY01_0066_B03.b : GATGTTCTTTATCCGGCGGCCGACCCTAGATATTAACTGGACGGGGATGACCAACCTCCT
20110601C-009456 : GGATATCCCAGGACTCAGCTCCCTCTCTGACACCATGATCATGGATTCCATCGCTGCCTT
---------+---------+---------+---------+---------+---------+ 971
PST01_0087_F06.b : GGATATCC*AGGACTCAGCTCCCTCTCTGACACCATGATCATGGATTCCATCGCTGCCTT
PST01_0038_B09.b : GGATATCCCAGGACTCAGCTCCCTCTCTGACACCATGATCATGGATTCCATCGCTGCCTT
PST01_0033_F11.b : GGATATCCCAGGACTCAGCTCCCTCTCTGACACCATGATCATGGATTCCATCGCTGCCTT
THY01_0066_B03.b : GGATATCCcangactcaggtatcaagcacctgctaagggtcccaggtgttcctggcttgg
20110601C-009456 : CCTTGTGTTANCCNACCGATATTGGTGCCCTTGTGCCCTGACTTCAAGACGTGGCCAGTT
---------+---------+---------+---------+---------+---------+ 1031
PST01_0087_F06.b : CCnttgtgtacccaaccgattattggntgcccttttgtgctgacctttcagacgtggccc
PST01_0038_B09.b : CCttgtgttaccaaaccgatattggtgccccttgtgctgaccttcagacgtggccagttg
PST01_0033_F11.b : CCTTGTGTTANCCNACCGATATTGGTGCCCTTGTGCCCTGACTTCAAGACGTGGCCAGTT
THY01_0066_B03.b : aggtttaagggataccgagcaggaaaagatgcagctggttgtcttcaggagccttgaccc
20110601C-009456 : GCGTTCCCTCTTCCAGGGG.........................................
---------+---------+---------+---------+---------+---------+ 1050
PST01_0087_F06.b : agttgcggtcccctcttcccaggggtattattcgggttcactgctggctgccgaggactg
PST01_0038_B09.b : cgtccccctctccnaggggtatattcggtttcactgctggctgcacgagactgagctcca
PST01_0033_F11.b : GCGTTCCCTCTTCCAGGGGtattatcgggttcactgctggctgcacgaggactgactcca
THY01_0066_B03.b : tttgtggggagatgaaaccttccaaaaaagtcctctt
20110601C-009456 : ............................................................
---------+---------+---------+---------+---------+---------+ 1050
PST01_0087_F06.b : acctccaagacaatatgtaaagggcttgatgagggcaaatcaaaccctttggatcggtgc
PST01_0038_B09.b : ggacaatattgtaaggcttgaatgagggcaagcagaccccttgcactcggcgatgggtac
PST01_0033_F11.b : agacaatatgtaagggcttgattgaggcagtcaaaccctttcactcgggcgagtggatac
THY01_0066_B03.b :
20110601C-009456 : ............................................................
---------+---------+---------+---------+---------+---------+ 1050
PST01_0087_F06.b : aagggttaccaagctttctgcagtctggtcatcaatgaggactcacccccttggggaaaa
PST01_0038_B09.b : cagcctttcgcatcgtgcatcgagaagactcaaccccagtgggaaaaactagaagggatg
PST01_0033_F11.b : cggctttctgcatcggtctccataagaactcaccccctggggaaagaatttaagggatgg
THY01_0066_B03.b :
20110601C-009456 : ............................................................
---------+---------+---------+---------+---------+---------+ 1050
PST01_0087_F06.b : cttttaagggtagggcctgaagtcccgggcagaaattagtgtgaatgtttaaaagaatcc
PST01_0038_B09.b : tgctgaggcccgggcaggaattngggaatgtttaaagatccaacaaaaaattttgggaaa
PST01_0033_F11.b : ggctagagtccagggcgaaattgagggatggtttaaagatcccaaaaatacattttggga
THY01_0066_B03.b :
20110601C-009456 : ............................................................
---------+---------+---------+---------+---------+---------+ 1050
PST01_0087_F06.b : aaaaaatactttcgggacaaaaaatggattaaggaagatttcgggctccttaagaaatgt
PST01_0038_B09.b : aaactgattagaaagtttccgccccngagagaaggtccctcaagggggaggcattcccgg
PST01_0033_F11.b : aaaaactggattggaagttttccgccccgtagagaagtccccctaagggggaggcattcc
THY01_0066_B03.b :
20110601C-009456 : ............................................................
---------+---------+---------+---------+---------+---------+ 1050
PST01_0087_F06.b : ttccttcaagggggaggggattccccgggaaagggtcccttttcggggaaaaagggaatt
PST01_0038_B09.b : aaaggtcctcttcgggaaaaggagaatttggggaaggaccc
PST01_0033_F11.b : tcggtaaggtc
THY01_0066_B03.b :
20110601C-009456 : ............................................................
---------+---------+---------+---------+---------+---------+ 1050
PST01_0087_F06.b : ttcgggacaagactccccc
PST01_0038_B09.b :
PST01_0033_F11.b :
THY01_0066_B03.b :