[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-009556
Length:
974
Sequence:
[FASTA format sequence]
TTCTACTGGT TTGCCTTCTG GGAATCTCGA GGTTCAGTGG CTGGGTAAAA TGGCGGAAGC
TGCGGAGCTG GTGTGGCTTC GTGGCCCTGC CTTCGGGTGC AAGGCGTTGC GCGTTACCTC
GACCCTGTGC TCCGTACGGG ATTTTATCCA CCGGCACTGC CAAGATCAGG TTGTTCCATT
GGAATACTTC TTTGTGAAAT GCAACGGATT ACTCGTTAAT GCCAGTGACA CAGTGCAGCA
TGGAGCTGTT TATAGTTTGG AGCCCAGACT TCGTGGTGGA AAAGGAGGTT TTGGCTCTAT
GCTCCGAGCA CTTGGTGCTC AGATTGAGAA GACAACCAAC CGAGAAGCTT GCCGGGATCT
CAGTGGAAGG AGACTCCGAG ATGTCAATCA TGAAAAAGCG ATGGCTGAAT GGGTAAAACA
ACAAGCTGAG CGAGAAGCTG AAAAAGAGCA GAAGCGCCTG GAACGGCTGC AGCGGAAGCT
CGCAGAGCCC AGGCACTGCT TCACCAGCCC CGACTACCAG CAGCAGTGCC ATGAGATGGC
CGAGCGCCTG GAGGATTCTG TCCTCAAAGG TGAGAATGAG GTGTCCTCAG TTCCATCGGC
CAGCATCCCT GAAGCCAGCT GTTCCCCACA AAGGGCAGTA TTTAAGCTTC TTTGGTTTAC
AGATTCCTGA GAATCTGGTG AAAGCTGTGG CATTTCTCAC TTCAGTAATG AACATAGTGT
ATCTTACAAC CCAGGGGAGA GACCCACATA CTCATACAAC ATTTGACACA CTTGACCCCT
GAACTCTTTG GGCCCATGGG CCCCAGGTAA GAATACTTTC TGTGCTTGGT GGGGAGAACC
TAAGTCTTCA GGAGGTGCCT AGACCTCAAC ATATCTGCTT CTGGTTTTAG GTCACTTTTA
TTTATTTATT TTTTCAGACC CGCACCTGTG GCTCTGGCGT ANGCTGGTGG CTACAGCTCT
GAATAGACCC CTAG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | C1orf55 | hypothetical protein LOC163859 [Homo sapiens]. | 288 | 7e-78 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | BC031781 | hypothetical protein LOC208768 [Mus musculus]. | 267 | 8e-72 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC480111 | PREDICTED: similar to CG5986-PA [Canis familiaris]. | 262 | 3e-70 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | C16H1orf55 | hypothetical protein LOC534664 [Bos taurus]. | 287 | 9e-78 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC100524888 | PREDICTED: UPF0667 protein C1orf55-like [Sus scrofa]. | 322 | 2e-88 | O |
|
|
20110601C-009556 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVR01_0043_F03.b : gggcttttttgtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0112_H10.b : nntttactttagcgnacgag
UTR01_0024_D03.b : ggggcacctattagxxxxxxxxxxxxx
OVRT1_0020_A09.b : nncctcctctagcgcacgag
ITT01_0037_C06.b : n
20110601C-009556 : ..................TTCTACTGGTTTGCCTTCTGGGAATCTCGAGGTTCAGTGGCT
---------+---------+---------+---------+---------+---------+ 42
OVR01_0043_F03.b : xxxxxxxxxxxxxxxcgtTTCTACTGGTTTGCCTTCTGGGAATCTCGAGGTTCAGTGCCT
CLNT1_0112_H10.b : tgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGGCT
UTR01_0024_D03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGGCT
OVRT1_0020_A09.b : tgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtGTGGCT
ITT01_0037_C06.b : nggtgaaacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGGCT
20110601C-009556 : GGGTAAAATGGCGGAAGCTGCGGAGCTGGTGTGGCTTCGTGGCCCTGCCTTCGGGTGCAA
---------+---------+---------+---------+---------+---------+ 102
OVR01_0043_F03.b : TGGTAAAATGGCGGAAGCTGCGGAGCTGGTGTGGCTTCGTGGCCCTGCCTTCGGGTGCAA
CLNT1_0112_H10.b : GGGTAAAATGGCGGAAGCTGCGGAGCTGGTGTGGCTTCGTGGCCCTGCCTTCGGGTGCAA
UTR01_0024_D03.b : GGGTAAAATGGCGGAAGCTGCGGAGCTGGTGTGGCTTCGTGGCCCTGCCTTCGGGTGCAA
OVRT1_0020_A09.b : GGGTAAAATGGCGGAAGCTGCGGAGCTGGTGTGGCTTCGTGGCCCTGCCTTCGGGTGCAA
ITT01_0037_C06.b : GGGTAAAATGGCGGAAGCTGCGGAGCTGGTGTGGCTTCGTGGCCCTGCCTTCGGGTGCAA
20110601C-009556 : GGCGTTGCGCGTTACCTCGACCCTGTGCTCCGTACGGGATTTTATCCACCGGCACTGCCA
---------+---------+---------+---------+---------+---------+ 162
OVR01_0043_F03.b : GGCGTTGCGCGTTACCCCGACCCTGTGCTCCGTACGGGATTTTATCCACCGGCACTGCCA
CLNT1_0112_H10.b : GGCGTTGCGCGTTACCTCGACCCTGTGCTCCGTACGGGATTTTATCCACCGGCACTGCCA
UTR01_0024_D03.b : GGCGTTGCGCGTTACCTCGACCCTGTGCTCCGTACGGGATTTTATCCACCGGCACTGCCA
OVRT1_0020_A09.b : GGCGTTGCGCGTTACCTCGACCCTGTGCTCCGTACGGGATTTTATCCACCGGCACTGCCA
ITT01_0037_C06.b : GGCGTTGCGCGTTACCTCGACCCTGTGCTCCGTACGGGATTTTATCCACCGGCACTGCCA
20110601C-009556 : AGATCAGGTTGTTCCATTGGAATACTTCTTTGTGAAATGCAACGGATTACTCGTTAATGC
---------+---------+---------+---------+---------+---------+ 222
OVR01_0043_F03.b : AGATCAGGTTGTTCCATTGGAATACTTCTTTGTGAAATGCAACGGATTACTCGTTAATGC
CLNT1_0112_H10.b : AGATCAGGTTGTTCCATTGGAATACTTCTTTGTGAAATGCAACGGATTACTCGTTAATGC
UTR01_0024_D03.b : AGATCAGGTTGTTCCATTGGAATACTTCTTTGTGAAATGCAACGGATTACTCGTTAATGC
OVRT1_0020_A09.b : AGATCAGGTTGTTCCATTGGAATACTTCTTTGTGAAATGCAACGGATTACTCGTTAATGC
ITT01_0037_C06.b : AGATCAGGTTGTTCCATTGAAATACTTCTTTGTGAAATGCAACGGATTACTCGTTAATGC
20110601C-009556 : CAGTGACACAGTGCAGCATGGAGCTGTTTATAGTTTGGAGCCCAGACTTCGTGGTGGAAA
---------+---------+---------+---------+---------+---------+ 282
OVR01_0043_F03.b : CAGTGACACAGTGCAGCATGGAGCTGTTTATAGTTTGGAGCCCAGACTTCGTGGTGGAAA
CLNT1_0112_H10.b : CAGTGACACAGTGCAGCATGGAGCTGTTTATAGTTTGGAGCCCAGACTTCGTGGTGGAAA
UTR01_0024_D03.b : CAGTGACGCAGTGCAGCATGGAGCTGTTTATAGTTTGGAGCCCAGACTTCGTGGTGGAAA
OVRT1_0020_A09.b : CAGTGACACAGTGCAGCATGGAGCTGTTTATAGTTTGGAGCCCAGACTTCGTGGTGGAAA
ITT01_0037_C06.b : CAGTGACACAGTGCAGCATGGAGCTGTTTATAGTTTGGAGCCCAGACTTCGTGGTGGAAA
20110601C-009556 : AGGAGGTTTTGGCTCTATGCTCCGAGCACTTGGTGCTCAGATTGAGAAGACAACCAACCG
---------+---------+---------+---------+---------+---------+ 342
OVR01_0043_F03.b : AGGAGGTTTTGGCTCTATGCTCCGAGCACTTGGTGCTCACATTGAGAAGACAACCAACCG
CLNT1_0112_H10.b : AGGAGGTTTTGGCTCTATGCTTCGAGCACTTGGTGCTCAGATTGAGAAGACAACCAACCG
UTR01_0024_D03.b : AGGAGGTTTTGGCTCTATGCTCCGAGCACTTGGTGCTCAGATTGAGAAGACAACCAACCG
OVRT1_0020_A09.b : AGGAGGTTTTGGCTCTATGCTTCGAGCACTTGGTGCTCAGATTGAGAAGACAACCAACCG
ITT01_0037_C06.b : AGGAGGTTTTGGCTCTATGCTCCGAGCACTTGGTGCTCAGATTGAGAAGACAACCAACCG
20110601C-009556 : AGAAGCTTGCCGGGATCTCAGTGGAAGGAGACTCCGAGATGTCAATCATGAAAAAGCGAT
---------+---------+---------+---------+---------+---------+ 402
OVR01_0043_F03.b : AGAAGCTTGCCGGGATCTCAGTGGAAGGAGACTCCGAGATGTCAATCATGAAAAAGCGAT
CLNT1_0112_H10.b : AGAAGCTTGCCGGGATCTCAGTGGAAGGAGACTCCGAGATGTCAATCATGAAAAAGCGAT
UTR01_0024_D03.b : AGAAGCTTGCCGGGATCTCAGTGGAAGGAGACTCCGAGATGTCAATCATGAAAAAGCGAT
OVRT1_0020_A09.b : AGAAGCTTGCCGGGATCTCAGTGGAAGGAGACTCCGAGATGTCAATCATGAAAAAGCGAT
ITT01_0037_C06.b : AGAAGCTTGCCGGGATCTCAGTGGAAGGAGACTCCGAGATGTCAATCATGAAAAAGCGAT
20110601C-009556 : GGCTGAATGGGTAAAACAACAAGCTGAGCGAGAAGCTGAAAAAGAGCAGAAGCGCCTGGA
---------+---------+---------+---------+---------+---------+ 462
OVR01_0043_F03.b : GGCTGAATGGGTAAAACAACAAGCTGAGCGAGAAGCTGAAAAAGACCAGAAGCGCCTGGA
CLNT1_0112_H10.b : GGCTGAATGGGTAAAACAACAAGCTGAGCGAGAAGCTGAAAAAGAGCAGAAGCGCCTGGA
UTR01_0024_D03.b : GGCTGAATGGGTAAAACAACAAGCTGAGCGAGAAGCTGAAAAAGAGCAGAAGCGCCTGGA
OVRT1_0020_A09.b : GGCTGAATGGGTAAAACAACAAGCTGAGCGAGAAGCTGAAAAAGAGCAGAAGCGCCTGGA
ITT01_0037_C06.b : GGCTGAATGGGTAAAACAACAAGCTGAGCGAGAAGCTGAAAAAGAGCAGAAGCGCCTGGA
20110601C-009556 : ACGGCTGCAGCGGAAGCTCGCAGAGCCCAGGCACTGCTTCACCAGCCCCGACTACCAGCA
---------+---------+---------+---------+---------+---------+ 522
OVR01_0043_F03.b : ACGGCTGCAGCGGAAGCTCGCAGAGCCCAGGCACTGCTTCACCAGCCCCGACTACCAGCA
CLNT1_0112_H10.b : ACGGCTGCAGCGGAAGCTCGCAGAGCCCAGGCACTGCTTCACCAGCCCCGACTACCAGCA
UTR01_0024_D03.b : ACGGCTGCAGCGGAAGCTCGCAGAGCCCAGGCACTGCTTCACCAGCCCCGACTACCAGCA
OVRT1_0020_A09.b : ACGGCTGCAGCGGAAGCTCGCAGAGCCCAGGCACTGCTTCACCAGCCCCGACTACCAGCA
ITT01_0037_C06.b : ACGGCTGCAGCGGAAGCTCGCAGAGCCCAGGCACTGCTTCACCAGCCCCGACTACCAGCA
20110601C-009556 : GCAGTGCCATGAGATGGCCGAGCGCCTGGAGGATTCTGTCCTCAAAGGTGAGAATGAGGT
---------+---------+---------+---------+---------+---------+ 582
OVR01_0043_F03.b : GCAGTGCCATGAGATGGCCGAGCGCCTGGAGGATTCTGTCCTCAAAGGTGAGAATGAGGT
CLNT1_0112_H10.b : GCAGTGCCATGAGATGGCCGAGCGCCTGGAGGATTCTGTCCTCAAAGGTGAGAATGAGGT
UTR01_0024_D03.b : GCAGTGCCATGAGATGGCCGAGCGCCTGGAGGATTCTGTCCTCAAAGGTGAGAATGAGGT
OVRT1_0020_A09.b : GCAGTGCCATGAGATGGCCGAGCGCCTGGAGGATTCTGTCCTCAAAGGTGAGAATGAGGT
ITT01_0037_C06.b : GCAGTGCCATGAGATGGCCGAGCGCCTGGAGGATTCTGTCCTCAAAGGTGAGAATGAGGT
20110601C-009556 : GTCCTCAGTTCCATCGGCCAGCATCCCTGAAGCCAGCTGTTCCCCACAAAGGGCAGTATT
---------+---------+---------+---------+---------+---------+ 642
OVR01_0043_F03.b : GTCCTCAGTTCCGTCGGCCAGCATCCCTGAAGCCAGCTGTTCCCCACAAAGGGCAGTATT
CLNT1_0112_H10.b : GTCCTCAGTTCCATCGGCCAGCATCCCTGAAGCCAGCTGTTCCCCACAAAGGGCAGTATT
UTR01_0024_D03.b : GTCCTCAGTTCCATCGGCCAGCATCCCTGAAGCCAGCTGTTCCCCACAAAGGGCAGTATT
OVRT1_0020_A09.b : GTCCTCAGTTCCATCGGCCAGCATCCCTGAAGCCAGCTGTTCCCCACAAAGGGCAGTATT
ITT01_0037_C06.b : GTCCTCAGTTCCATCGGCCAGCATCCCTGAAGCCAGCTGTTCCCCACAAAGGGCAGTATT
20110601C-009556 : TAAGCTTCTTTGGTTTACAGATTCCTGAGAATCTGGTGAAAGCTGTGGCATTTCTCACTT
---------+---------+---------+---------+---------+---------+ 702
OVR01_0043_F03.b : TAAGCTTCTTTGGTTTACAGATTCCTGAGAATCTGGTGAAAGCTGTGCCATTTCTCCCTT
CLNT1_0112_H10.b : TAAGCTTCTTTGGTTTACAGATTCCTGAGAATCTGGTGAAAGCTGTGGCATTTCTCACTT
UTR01_0024_D03.b : TAAGCTTCTTTGGTTTACAGATTCCTGAGAATCTGGTGAAAGCTGTGGCATTTCTCACTT
OVRT1_0020_A09.b : TAAGCTTCTTTGGTTTACAGATTCCTGAGAATCTGGTGAAAGCTGTGGCATTTCTCACTT
ITT01_0037_C06.b : TAAGCTTCTTTGGTTTACAGATTCCTGAGAATCTGGTGAAAGCTGTGGCATTTCTCACTT
20110601C-009556 : CAGTAATGAACATAGTGTATCTTACAACCCAGGGGAGAGACCCACATACTCATACAACAT
---------+---------+---------+---------+---------+---------+ 762
OVR01_0043_F03.b : CAGTAATGAACATATTGTATCTTACCACCCcacgggagaaaccccacattactcattaca
CLNT1_0112_H10.b : CAGTAATGAACATAGTGTATCTTACAACCCAGGGGAGAGACCCACATACTCATACAACAT
UTR01_0024_D03.b : CAGTAATGAACATAGTGTATCTTACAACCCAGGGGAGAGACCCACATACTCATACAACAT
OVRT1_0020_A09.b : CAGTAATGAACATAGTGTATCTTACAACCCAGGGGAGAGACCCACATACTCATACAACAT
ITT01_0037_C06.b : CAGTAATGAACATAGTGTATCTTACAACCCAGGGGAGAGACCCACATACTCATACAACAT
20110601C-009556 : TTGACACACTTGACCCCTGAACTCTTTGGGCCCATGGGCCCCAGGTAAGAATACTTTCTG
---------+---------+---------+---------+---------+---------+ 822
OVR01_0043_F03.b : acatttgacacctctttgaccccctgaactctttgtgcccattggccctcacttaagaaa
CLNT1_0112_H10.b : TTGACACACTTGACCCCCTGACTCTTTGGGCCCATGGGGCCCAGGTAAGAATACTTTCTG
UTR01_0024_D03.b : TTGACACACTTGACCCCTGAACTCTTTGGGCCCATGGGCCCCAGGTAAGAATACTTTCTG
OVRT1_0020_A09.b : TTGACACACTTGACCCCTGAACTCTTTGGGCCCATGGGCCCCAGGTAAGAATACTTTCTG
ITT01_0037_C06.b : TTGACACACTTGACCCCTGAACTCTTTGGGCCCATGGGCCCCAGGTAAGAATACTTTCTG
20110601C-009556 : TGCTTGGTGGGGAGAACCTAAGTCTTCAGGAGGTGCCTAGACCTCAACATATCTGCTTCT
---------+---------+---------+---------+---------+---------+ 882
OVR01_0043_F03.b : acttttctgtgcttggttgggggaaatcctagtcctccacgaggtgccctaaacctccac
CLNT1_0112_H10.b : TGCTTGGTGGGGAGAAaactaagtctcagggagtgcctagacctcacatatctgcttctg
UTR01_0024_D03.b : TGCTTGGTGGGGAGAACCTAAGTCTTCAGGAGGTGCCTAGACCTCAACATATCTGCT
OVRT1_0020_A09.b : TGCTTGGTGGGGAGAACCTAAGTCTTCAGGAAGTGCCTAGACCTCAACATATCTGCTTCT
ITT01_0037_C06.b : TGCTTGGTGGGGAGAACCTAAGTCTTCAGGAGGTGCCTAGACCCTCACATACCTGCTTCT
20110601C-009556 : GGTTTTAGGTCACTTTTATTTATTTATTTTTTCAGACCCGCACCTGTGGCTCTGGCGTAN
---------+---------+---------+---------+---------+---------+ 942
OVR01_0043_F03.b : ctcatctcctttcggttttatgccccttttatttttttttttttttcaaaccctcacctg
CLNT1_0112_H10.b : gttttagtcacttttatttatttatttttcagacccgcactgtggcacatggagtcccag
UTR01_0024_D03.b :
OVRT1_0020_A09.b : GGTTTTAGGTCACTTTTAT*TATTTATTTTTTCAGACCCGCACCTGgtgcacatggaggt
ITT01_0037_C06.b : GGTTTTAGGTCACTTTTATTTATTTATTTTTtcagacccgcacctgtggctctggcgtan
20110601C-009556 : GCTGGTGGCTACAGCTCTGAATAGACCCCTAG............................
---------+---------+---------+---------+---------+---------+ 974
OVR01_0043_F03.b : tcgtcccctgcacgttcctaccctcctcatctcttttccccttgttccctccttccctcc
CLNT1_0112_H10.b : gggcagggggtttaaaacaaactt
UTR01_0024_D03.b :
OVRT1_0020_A09.b : tctaggctaaggggttgaatcnnanntttnnntnntnnnttat
ITT01_0037_C06.b : gctggtggctacagctctgaatagacccctagcctgggaaccctcatatngcacggnnag
20110601C-009556 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
OVR01_0043_F03.b : cttctccctcctatctaactctctccttcttatccctcttccctttctctcttgtacact
CLNT1_0112_H10.b :
UTR01_0024_D03.b :
OVRT1_0020_A09.b :
ITT01_0037_C06.b : cggnccagaaanggcaaaagacccccccaaaaagacatcctcgattcagatatttttcca
20110601C-009556 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
OVR01_0043_F03.b : cccacttccttctccccctcttctttaacttctcttctctcctcattcttctcttttttt
CLNT1_0112_H10.b :
UTR01_0024_D03.b :
OVRT1_0020_A09.b :
ITT01_0037_C06.b : gctcactttttataacttcgaactcctatatattcagcctttcctgtagtaataaagaac
20110601C-009556 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
OVR01_0043_F03.b : tcatctcttcttttattatcctcatattctctccttctcattcctctcactatcttccct
CLNT1_0112_H10.b :
UTR01_0024_D03.b :
OVRT1_0020_A09.b :
ITT01_0037_C06.b : tgaggataaaagtattttgacatattatccatgaggtgaaaaacgatctctattcaagct
20110601C-009556 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
OVR01_0043_F03.b : atcaccctcttctctatccctctcctcatcctcaccttctctcctctctttttttctact
CLNT1_0112_H10.b :
UTR01_0024_D03.b :
OVRT1_0020_A09.b :
ITT01_0037_C06.b : taagaaagaatcctcggcccaatatgttggcttgctaaaaagtcccaacccaattttttg
20110601C-009556 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
OVR01_0043_F03.b : tcactacccttta
CLNT1_0112_H10.b :
UTR01_0024_D03.b :
OVRT1_0020_A09.b :
ITT01_0037_C06.b : ttgggaattttggacaaaaaaaggggtgcaattaggacccaaggcccttaaggttgtggg
20110601C-009556 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
OVR01_0043_F03.b :
CLNT1_0112_H10.b :
UTR01_0024_D03.b :
OVRT1_0020_A09.b :
ITT01_0037_C06.b : actttgaggtgaaaaaggggaatctttttataacaaaaaaagttttgggccccccatagg
20110601C-009556 : ............................................................
---------+---------+---------+---------+---------+---------+ 974
OVR01_0043_F03.b :
CLNT1_0112_H10.b :
UTR01_0024_D03.b :
OVRT1_0020_A09.b :
ITT01_0037_C06.b : ggccggggttctcccccccgaagagcgcccccctttt