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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-009707

Length: 977

Sequence:  [FASTA format sequence]
GCTTGTTACC ATGGTAGCCA GAGTGTATAA CCAGAGCTTG AGCAGCGGAG ATCTCAAAAG
CATTCCTGCA GGGCTCCGGC GCGGGTGCTC CTTCAGAGCC TAGCGGCCAC TCTCAGTGGG
CACCCAGCCG GAGTCTTACC TAAGAGTGAG GTTTCCGTTT GGGTCTATCA CACAACGGGC
AAGGTTACCC TAACGCCCCT TTCCTCCAGA GGTGGCTTCC CTGCCACAGG CGCCGGGTCT
GGATGAGGTC TCTGTTCGCA TAGCCCTCCC ATGGCTTCCC AGGAGAGGGT GGAGACTGTG
ACCAAAGGAA CTGGCTTCTG GCGCTGCCCC AAGCCGGCCG CTTACACCCC AAGAACCTGC
GAGCTGCTCA GAGCCATGAT GAAGGAATCC AAACTGACTA ACTTCCAACA GCGCCACATC
ATGGACACCA TGAAACGAGG AGACGCTCTC CCGTTACACT GCAGCCCAAC TTCCAGCCAG
AAGGTCTTGC CTGCCAGGCA GCCAGCCTCG GCCATCTACC TGCCACCCAT CCTGGCAGCC
CGGTCCCACC TCCGACCTGC CAGCCTGTGC CAAGCCAACG GGGCCTACAG CCGGGAGCAC
TTCAGGCCTC AAGCCACCCG GGATCTGGAG AAGGAGAAGC GAAGACTCCA GAATATTTTT
GCCACGGGGA AGGAGCCAGA GGAAAGGAAG AGAAAGCCCC CTCCTGTGCA GCAGGAGGCC
CCAGCGCCTG AGCTGGACCG GTTTGAAGAA CTGGTGAAGG AAATCCAGGA GAGGAAAGCG
TTCTTGGCTG ACATGGAGGC CCTGGGGCAG GGCAGGCGGT ACCGAGGGGT CATCCTCACC
GAAATCTCCC AGAAACTACA GGAGATGGGA GACCTTTGAC GCAAGAAGAG CGAGGAACTT
NGAAGGCTCT GGCCACCCCT TAATCTGTCT CCAGAGCCCG CGGGGGAGCC CACCCTCTTC
ACCAAAAATT ACCCCCT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		C22orf23	hypothetical protein LOC84645 isoform 1 [Homo sapiens].	297	9e-81	O
		C22orf23	hypothetical protein LOC84645 isoform 2 [Homo sapiens].	248	6e-66	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		1700088E04Rik	hypothetical protein LOC27660 [Mus musculus].	287	8e-78	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC481259	PREDICTED: similar to Hypothetical UPF0193 protein EVG1 [Canis familiaris].	335	5e-92	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		C5H22orf23	hypothetical protein LOC520712 [Bos taurus].	325	4e-89	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		C22orf23	PREDICTED: UPF0193 protein EVG1 isoform 1 [Sus scrofa].	359	1e-99	O
		C22orf23	PREDICTED: UPF0193 protein EVG1 isoform 2 [Sus scrofa].	285	2e-77	O

Alignment:      TOP

20110601C-009707 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LNG01_0092_C07.b :              nnnnaagctggacttgacagtttgtcxxxxxxxxxxxxxxxxxxxxx
LNG01_0058_E01.b : nngggccttnnnttccgcatggacatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0047_G10.b :                                             nntttgataggactat
UTR01_0105_A05.b :                                                             


20110601C-009707 : ................................GCTTGTTACCATGGTAGCCAGAGTGTAT
                   ---------+---------+---------+---------+---------+---------+ 28
LNG01_0092_C07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTTGTTACCATGGTAGCCAGAGTGTAT
LNG01_0058_E01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTTGTTACCATGGTAGCCAGAGTGTAT
TCH01_0047_G10.b : gacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
UTR01_0105_A05.b :       nnnnggataggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-009707 : AACCAGAGCTTGAGCAGCGGAGATCTCAAAAGCATTCCTGCAGGGCTCCGGCGCGGGTGC
                   ---------+---------+---------+---------+---------+---------+ 88
LNG01_0092_C07.b : AACCAGAGCTTGAGCAGCGGAGATCTCAAAAGCATTCCTGCAGGGCTCCGGCGCGGGTGC
LNG01_0058_E01.b : AACCAGAGCTTGAGCAGCGGAGATCTCAAAAGCATTCCTGCAGGGCTCCGGCGCGGGTGC
TCH01_0047_G10.b : xxxxxGAGCTTGAGCAGCGGAGATCTCAAAAGCATTCCTGCAGGGCTCCGGCGCGGGTGC
UTR01_0105_A05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCATTCCTGCAGGGCTCCGGCGCGGGTGC


20110601C-009707 : TCCTTCAGAGCCTAGCGGCCACTCTCAGTGGGCACCCAGCCGGAGTCTTACCTAAGAGTG
                   ---------+---------+---------+---------+---------+---------+ 148
LNG01_0092_C07.b : TCCTTCAGAGCCTAGCGGCCACTCTCAGTGGGCACCCAGCCGGAGTCTTACCTAAGAGTG
LNG01_0058_E01.b : TCCTTCAGAGCCTAGCGGCCACTCTCAGTGGGCACCCAGCCGGAGTCTTACCTAAGAGTG
TCH01_0047_G10.b : TCCTTCAGAGCCCAGCGGCCACTCTCAGTGGGCACCCAGCCGGAGTCTTACCTAAGAGTG
UTR01_0105_A05.b : TCCTTCAGAGCCCAGCGGCCACTCTCAGTGGGCACCCAGCCGGAGTCTTACCTAAGAGTG


20110601C-009707 : AGGTTTCCGTTTGGGTCTATCACACAACGGGCAAGGTTACCCTAACGCCCCTTTCCTCCA
                   ---------+---------+---------+---------+---------+---------+ 208
LNG01_0092_C07.b : AGGTTTCCGTTTGGGTCTATCACACAACGGGCAAGGTTACCCTAACGCCCCTTTCCTCCA
LNG01_0058_E01.b : AGGTTTCCGTTTGGGTCTATCACACAACGGGCAAGGTTACCCTAACGCCCCTTTCCTCCA
TCH01_0047_G10.b : AGGTTTCCGTTTGGGTCTATCACACAACGGGCAAGGTTACCCTAACGCCCCTTTCCTCCA
UTR01_0105_A05.b : AGGTTTCCGTTTGGGTCTATCACACAACGGGCAAGGTTACCCTAACGCCCCTTTCCTCCA


20110601C-009707 : GAGGTGGCTTCCCTGCCACAGGCGCCGGGTCTGGATGAGGTCTCTGTTCGCATAGCCCTC
                   ---------+---------+---------+---------+---------+---------+ 268
LNG01_0092_C07.b : GAGGTGGCTTCCCTGCCACAGGCGCCGGGTCTGGATGAGGTCTCTGTTCGCATAGCCCTC
LNG01_0058_E01.b : GAGGTGGCTTCCCTGCCACAGGCGCCGGGTCTGGATGAGGTCTCTGTTCGCATAGCCCTC
TCH01_0047_G10.b : GAGGTGGCTTCCCTGCCACAGGCGCCGGGTCTGGATGAGGTCTCTGTTCGCATAGCCCTC
UTR01_0105_A05.b : GAGGTGGCTTCCCTGCCACAGGCGCCGGGTCTGGATGAGGTCTCTGTTCGCATAGCCCTC


20110601C-009707 : CCATGGCTTCCCAGGAGAGGGTGGAGACTGTGACCAAAGGAACTGGCTTCTGGCGCTGCC
                   ---------+---------+---------+---------+---------+---------+ 328
LNG01_0092_C07.b : CCATGGCTTCCCAGGAGAGGGTGGAGACTGTGACCAAAGGAACTGGCTTCTGGCGCTGCC
LNG01_0058_E01.b : CCATGGCTTCCCAGGAGAGGGTGGAGACTGTGACCAAAGGAACTGGCTTCTGGCGCTGCC
TCH01_0047_G10.b : CCATGGCTTCCCAGGAGAGGGTGGAGACTGTGACCAAAGGAACTGGCTTCTGGCGCTGCC
UTR01_0105_A05.b : CCATGGCTTCCCAGGAGAGGGTGGAGACTGTGACCAAAGGAACTGGCTTCTGGCGCTGCC


20110601C-009707 : CCAAGCCGGCCGCTTACACCCCAAGAACCTGCGAGCTGCTCAGAGCCATGATGAAGGAAT
                   ---------+---------+---------+---------+---------+---------+ 388
LNG01_0092_C07.b : CCAAGCCGGCCGCTTACACCCCAAGAACCTGCGAGCTGCTCAGAGCCATGATGAAGGAAT
LNG01_0058_E01.b : CCAAGCCGGCCGCTTACACCCCAAGAACCTGCGAGCTGCTCAGAGCCATGATGAAGGAAT
TCH01_0047_G10.b : CCAAGCCGGCCGCTTACACCCCAAGAACCTGCGAGCTGCTCAGAGCCATGATGAAGGAAT
UTR01_0105_A05.b : CCAAGCCGGCCGCTTACACCCCAAGAACCTGCGAGCTGCTCAGAGCCATGATGAAGGAAT


20110601C-009707 : CCAAACTGACTAACTTCCAACAGCGCCACATCATGGACACCATGAAACGAGGAGACGCTC
                   ---------+---------+---------+---------+---------+---------+ 448
LNG01_0092_C07.b : CCAAACTGACTAACTTCCAACAGCGCCACATCATGGACACCATGAAAAGAGGAGACGCTC
LNG01_0058_E01.b : CCAAACTGACTAACTTCCAACAGCGCCACATCATGGACACCATGAAAAGAGGAGACGCTC
TCH01_0047_G10.b : CCAAACTGACTAACTTCCAACAGCGCCACATCATGGACACCATGAAACGAGGAGACGCTC
UTR01_0105_A05.b : CCAAACTGACTAACTTCCAACAGCGCCACATCATGGACACCATGAAACGAGGAGACGCTC


20110601C-009707 : TCCCGTTACACTGCAGCCCAACTTCCAGCCAGAAGGTCTTGCCTGCCAGGCAGCCAGCCT
                   ---------+---------+---------+---------+---------+---------+ 508
LNG01_0092_C07.b : TCCCGTTACACTGCAGCCCAACTTCCAGCCAGAGGGTCTTGCCTGCCAGGCAGCCGGCCT
LNG01_0058_E01.b : TCCCGTTACACTGCAGCCCAACTTCCAGCCAGAGGGTCTTGCCTGCCAGGCAGCCGGCCT
TCH01_0047_G10.b : TCCCGTTACACTGCAGCCCAACTTCCAGCCAGAAGGTCTTGCCTGCCAGGCAGCCAGCCT
UTR01_0105_A05.b : TCCCGTTACACTGCAGCCCAACTTCCAGCCAGAAGGTCTTGCCTGCCAGGCAGCCAGCCT


20110601C-009707 : CGGCCATCTACCTGCCACCCATCCTGGCAGCCCGGTCCCACCTCCGACCTGCCAGCCTGT
                   ---------+---------+---------+---------+---------+---------+ 568
LNG01_0092_C07.b : CGGCCATCTACCTGCCACCCATCCTGGCAGCCCGGTCCCACCTCCGGCCTGCCAGCCTGT
LNG01_0058_E01.b : CGGCCATCTACCTGCCACCCATCCTGGCAGCCCGGTCCCACCTCCGGCCTGCCAGCCTGT
TCH01_0047_G10.b : CGGCCATCTACCTGCCACCCATCCTGGCAGCCCGGTCCCACCTCCGACCTGCCAGCCTGT
UTR01_0105_A05.b : CGGCCATCTACCTGCCACCCATCCTGGCAGCCCGGTCCCACCTCCGACGTGCCAGCCTGT


20110601C-009707 : GCCAAGCCAACGGGGCCTACAGCCGGGAGCACTTCAGGCCTCAAGCCACCCGGGATCTGG
                   ---------+---------+---------+---------+---------+---------+ 628
LNG01_0092_C07.b : GCCAAGCCAACGGGGCCTACAGCCGGGAGCAGTTCAGGCCTCAAGCCACCCGGGATCTGG
LNG01_0058_E01.b : GCCAAGCCAACGGGGCCTACAGCCGGGAGCAGTTCAGGCCTCAAGCCACCCGGGATCTGG
TCH01_0047_G10.b : GCCAAGCCAACGGGGCCTACAGCCGGGAGCACTTCAGGCCTCAAGCCACCCGGGATCTGG
UTR01_0105_A05.b : GCCAAGCCAACGGGGCCTACAGCCGGGAGCACTTCAGGCCTCAAGCCACCCGGGATCTGG


20110601C-009707 : AGAAGGAGAAGCGAAGACTCCAGAATATTTTTGCCACGGGGAAGGAGCCAGAGGAAAGGA
                   ---------+---------+---------+---------+---------+---------+ 688
LNG01_0092_C07.b : AGAAGGAGAAGCGAAGACTCCAGAATATTTTCGCCACGGGGAAGGAGCCAGAGGAAAGGA
LNG01_0058_E01.b : AGAAGGAGAAGCGAAGACTCCAGAATATTTTTGCCACGGGGAAGGAGCCAGAGGAAAGGA
TCH01_0047_G10.b : AGAAGGAGAAGCGAAGACTCCAGAATATTTTTGCCACGGGGAAGGAGCCAGAGGAAAGGA
UTR01_0105_A05.b : AGAAGGAGAAGCGAAGACTCCAGAATATTTTTGCCACGGGGAAGGAGCCAGAGGAAAGGA


20110601C-009707 : AGAGAAAGCCCCCTCCTGTGCAGCAGGAGGCCCCAGCGCCTGAGCTGGACCGGTTTGAAG
                   ---------+---------+---------+---------+---------+---------+ 748
LNG01_0092_C07.b : AGAGAAAGCCCCCTCCTGTGCAGCAGGAGGCCCCAGCGCCTGAGCTGGACCGGTTTGAAG
LNG01_0058_E01.b : AGAGAAAGCCCCCTCCTGTGCAGCAGGANGCCCCAGCGCCTGAGCTGGACCGGTTTGAAG
TCH01_0047_G10.b : AGAGAAAGCCCCCTCCTGTGCAGCAGGAGGCCCCAGCGCCTGAGCTGGACCGGTTTGAAG
UTR01_0105_A05.b : AGAGAAAGCCCCCTCCTGTGCAGCAGGAGGCCCCAGCGCCTGAGCTGGACCGGTTTGAAG


20110601C-009707 : AACTGGTGAAGGAAATCCAGGAGAGGAAAGCGTTCTTGGCTGACATGGAGGCCCTGGGGC
                   ---------+---------+---------+---------+---------+---------+ 808
LNG01_0092_C07.b : AACTGGTGAAGGAAATCCAGGAGAGGAAAGCGTTCTTGGCTGACATGGAGGCCCTGGGGC
LNG01_0058_E01.b : AACTGGTGAAGGAAATCCAGGAGAGGAAAGCGTTCTTGGCTGACATGGAGGCCCTGGGGG
TCH01_0047_G10.b : AACTGGTGAAGGAAATCCAGGAGAGGAAAGCGTTCTTGGCTGACATGGAGGCCCTGGGGC
UTR01_0105_A05.b : AACTGGTGAAGGAAATCCAGGAGAGGAAAGCGTTCTTGGCTGACATGGAGGCCCTGGGGC


20110601C-009707 : AGGGCAGGCGGTACCGAGGGGTCATCCTCACCGAAATCTCCCAGAAACTACAGGAGATGG
                   ---------+---------+---------+---------+---------+---------+ 868
LNG01_0092_C07.b : AGGNCANNGCGTACCCGAGGGTCATCCTCACCGAAATCTCCNAGAAACTAcnagagatgg
LNG01_0058_E01.b : CAGGCAAGCGGTACCCAGGGGTCATCCTCACCGAAATCTCCCAGAAACTAcaggagatgg
TCH01_0047_G10.b : AGGGCAGGCGGTACCGAGGGGTCATCCTCACCGAAATCTCCCAGAAACTACAGGAGATGG
UTR01_0105_A05.b : AGGGCAGGCGGTACCGAGGGGTCATCCTCACCGAGATCTCCCAGAAACTAcaggagatgg


20110601C-009707 : GAGACCTTTGACGCAAGAAGAGCGAGGAACTTNGAAGGCTCTGGCCACCCCTTAATCTGT
                   ---------+---------+---------+---------+---------+---------+ 928
LNG01_0092_C07.b : aagaccttgannngcagagagcaggaacttangaaggctctgggcacccctaatctgtct
LNG01_0058_E01.b : gagaccctgaccgcaggaagagcaaggaacttaggagggctctgggcaccccntaatctg
TCH01_0047_G10.b : GAGACCTTTGACGCAAGAAGAGCGAGGAACTTNGAAGGCTCTGGCCACCCCTTAATCTGT
UTR01_0105_A05.b : aagaacctgaccggcagaggagcgaggaacttangaaggctctgggcacccctaatctgt


20110601C-009707 : CTCCAGAGCCCGCGGGGGAGCCCACCCTCTTCACCAAAAATTACCCCCT...........
                   ---------+---------+---------+---------+---------+---------+ 977
LNG01_0092_C07.b : ccagagccagcggggagccaccctcctcacaaaactaccccttgcnagcagggcacccca
LNG01_0058_E01.b : tctccagaggccacgggggagccacccttctcccccaaaacttacccctggcaagcaagg
TCH01_0047_G10.b : CTCCAGAGCCCGCGGGGGAGCCCACCCTCTTCACCAAAAATTACCCCCTtggccagcagg
UTR01_0105_A05.b : ctccagagccagcggggaagccacccntctccacaaaacctaccccctgccagcaaggcc


20110601C-009707 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 977
LNG01_0092_C07.b : ggcagcccacaccgggctcagcatgtcagtgctgcatacacggcccgctaggcactggac
LNG01_0058_E01.b : ccacccccaggcagcccacaacccgggcttcagcctgtcaaggggtgcatacacgggccc
TCH01_0047_G10.b : gccacccccaaggcaggccaacaaccgggccttcagccatgtcaagtggctgcataaccc
UTR01_0105_A05.b : accccaggccagcccacacccgggccttcaccatgtcaagtgctgcatagcacggcccgc


20110601C-009707 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 977
LNG01_0092_C07.b : cgacgcgcctaaaggtgccagtccgaaatgntggtccctcaatctaccagactgagcact
LNG01_0058_E01.b : gcctaggcacctggaaaaaacagcccctaaaagggggcccctccaaaaaataactgttcc
TCH01_0047_G10.b : cgcccccccctagggcaccctggaaccaaacgggcccctaaaagggtggcacgtcccaaa
UTR01_0105_A05.b : ctagggaacctggaacagaaggcccctaaaggtggcccctctaaaaatgaacggtttcct


20110601C-009707 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 977
LNG01_0092_C07.b : gactgggacctccatgacccccccccccccacttggttttctgggaacccccaatgaaag
LNG01_0058_E01.b : ctcgaacttccccgggacggggtcccgaaacccgggaccctcccatgtaccccccccccc
TCH01_0047_G10.b : aatgaactggttcccccgagactcttccggggacctgaggtcacttaacctcgggaaccg
UTR01_0105_A05.b : cagaccttaccaggaacctgagtcgctaacctcggggacaattcagataaaccc     


20110601C-009707 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 977
LNG01_0092_C07.b : ttactaattggacggtaggtccggactccgccccctgggttgtcggattgttaaaaaaga
LNG01_0058_E01.b : ccccccactgggggttttctggaaaaccccccaaggaaacgggttaccctccctttgggc
TCH01_0047_G10.b : tccccaatgaacaccccccccccccccccccaatttggtcttttccctggaaagaccccc
UTR01_0105_A05.b :                                                             


20110601C-009707 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 977
LNG01_0092_C07.b : gctcccccggggatgctttccggtttcggttggaaaccctttaaaaaaagtggggcccgg
LNG01_0058_E01.b : ggggtggagt                                                 
TCH01_0047_G10.b : ccaaagggagacagtgttac                                       
UTR01_0105_A05.b :                                                             


20110601C-009707 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 977
LNG01_0092_C07.b : ccccttcctaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
LNG01_0058_E01.b :                                                             
TCH01_0047_G10.b :                                                             
UTR01_0105_A05.b :                                                             


20110601C-009707 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 977
LNG01_0092_C07.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnn                               
LNG01_0058_E01.b :                                                             
TCH01_0047_G10.b :                                                             
UTR01_0105_A05.b :