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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-009786

Length: 1,090

Sequence:  [FASTA format sequence]
TCGGAAATGC AATCACCCGA GTCTCGCGGT GGGAAACAAG GCAAAATTAG AAAAGCTGTT
CGGCTTCCTC CTGGAGTACG TCGGGGATCT GGCTACGAAA GATCCACCAG ACCTCGGCGT
CATTGATAAG CTGGTTGTGC AGTTGTATAA TCTCTGCCAG ATGTTTCCTG AGTCTGCAAG
CTACTCCATG AAATTCGTCC TTCGAGACGC CATGCATGAG ATGGAAGGAA TGGTTGAGAC
CACCGGCCGG GCGGCCTTCC CCGGCCTGGA CGTGCTCGTT TACCTGAAAG TTGCTGGGCT
GCTGTTCCCG ACCTCTGACT TCTGGCACCC GGTCGTCACT CCTGCGCTGC TGTGTCTCAG
CCAGCTGCTC ACCAAGTGCC CGGTGCTGTC GCTCCCGGAC GTGGTGAAGG GTCTCTTCGT
GTGCTGCTTG TTCCTGGACT ACGTGTCCCT GTCCCAGAGA TTCATACCTG AGCTGCTTAA
TTTCCTCCTT GGGATCCTTT ACATCGCAGC TCCAGGGAGG CCAGGCCAGG GTTACAGCCT
GGTGCCCCCG TTCAGAGCCC TCGGGAAGAA CGCCGGGCTG CTCTGGGTTT CCGACGCAGA
GGACGTGGCC ACGTGGCAGA GGAGGAGCCT CTCGCTCCGT TGGGCAGGGA GCTGGAAGGC
GCAGACGAGG ACGGAGGCCA ACCACACCAG ACTGTCCTGC CTGGCCGTGT GTCTGGCCCT
GGTGAAGCGC TGTGTGCTCC TGTACGGCGC GCTGCCAGCC TTCCACGACA TCGTGAGGCC
CCTGAAAGCC CTCCTCGCCC AACACCTGGC CGACTGCAGC CGCCCCCTCG AGATCCAGGA
GCTGACCCGA GGCGTCCTGA CGGACATGGA GAAGCAGCCG ACGCGCTGCC GGCCGCTGGT
CTGCGAGAAG AGCAAGCCCG TGCCGCTGAA GCTGTTCACC CCCCGGCTGG TCAGAGTCCT
GGAGTTTGGG AGGAAGCAGG GGAGCAGCAG GGAGGAGCAG GAGCGGAGGA GACTGATCCA
CAAACACAAG CGAGAGTTCA AGGGCGCCGT CCGCGAGATC CGCAAAGACA ACCAGTTCCT
GGCCCGGATG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		NOP14	nucleolar protein 14 [Homo sapiens].	576	e-164

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Nop14	nucleolar protein 14 [Mus musculus].	558	e-159

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC479076	PREDICTED: similar to CG5824-PA [Canis familiaris].	588	e-168

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		NOP14	nucleolar protein 14 [Bos taurus].	592	e-169

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		NOP14	PREDICTED: nucleolar protein 14 [Sus scrofa].	713	0.0
		LOC100627968	PREDICTED: nucleolar protein 14-like [Sus scrofa].	363	e-101	O

Alignment:      TOP

20110601C-009786 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SPL01_0081_H01.b : nnnnnggcttgtgacttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SMG01_0061_F05.b :                                                             
OVRT1_0061_A01.b :                                                             
TCH01_0049_H09.b :                                                             


20110601C-009786 : .....................TCGGAAATGCAATCACCCGAGTCTCGCGGTGGGAAACAA
                   ---------+---------+---------+---------+---------+---------+ 39
SPL01_0081_H01.b : xxxxxxxxxxxxxxxxxxxxxTCGGAAATGCAATCACCCGAGTCTCGCGGTGGGAAACAA
SMG01_0061_F05.b : nnggctctttnnnnggctaaagcagcggtaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRT1_0061_A01.b :                                                             
TCH01_0049_H09.b :                                                             


20110601C-009786 : GGCAAAATTAGAAAAGCTGTTCGGCTTCCTCCTGGAGTACGTCGGGGATCTGGCTACGAA
                   ---------+---------+---------+---------+---------+---------+ 99
SPL01_0081_H01.b : GGCAAAATTAGAAAAGCTGTTCGGCTTCCTCCTGGAGTACGTCGGGGATCTGGCTACGAA
SMG01_0061_F05.b : xxxxxxxTTAGAAAAGCTGTTCGGCTTCCTCCTGGAGTACGTCGGGGATCTGGCTACGAA
OVRT1_0061_A01.b :   ggctttttnggggcnaacctcagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0049_H09.b :                                                             


20110601C-009786 : AGATCCACCAGACCTCGGCGTCATTGATAAGCTGGTTGTGCAGTTGTATAATCTCTGCCA
                   ---------+---------+---------+---------+---------+---------+ 159
SPL01_0081_H01.b : AGATCCACCAGACCTCGGCGTCATTGATAAGCTGGTTGTGCAGTTGTATAATCTCTGCCA
SMG01_0061_F05.b : AGATCCACCAGACCTCGGCGTCATTGATAAGCTGGTTGTGCAGTTGTATAATCTCTGCCA
OVRT1_0061_A01.b : xxxxxxxxxxxxxxxxxxxxxxxxTGATAAGCTGGTTGTGCAGTTGTATAATCTCTGCCA
TCH01_0049_H09.b :                                                          nnt


20110601C-009786 : GATGTTTCCTGAGTCTGCAAGCTACTCCATGAAATTCGTCCTTCGAGACGCCATGCATGA
                   ---------+---------+---------+---------+---------+---------+ 219
SPL01_0081_H01.b : GATGTTTCCTGAGTCTGCAAGCAACTCCATGAAATTCGTCCTTCGAGACGCCATGCATGA
SMG01_0061_F05.b : GATGTTTCCTGAGTCTGCAAGCTACTCCATGAAATTCGTCCTTCGAGACGCCATGCATGA
OVRT1_0061_A01.b : GACGTTTCCTGAGTCTGCAAGCTACTCCATGAAATTCGTCCTTCGAGACGCCATGCATGA
TCH01_0049_H09.b : ttgctaggactataacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-009786 : GATGGAAGGAATGGTTGAGACCACCGGCCGGGCGGCCTTCCCCGGCCTGGACGTGCTCGT
                   ---------+---------+---------+---------+---------+---------+ 279
SPL01_0081_H01.b : GATGGAAGGAATGGTTGAGACCACCGGCCGGGCGGCCTTCCCCGGCCTGGACGTGCTCGT
SMG01_0061_F05.b : GATGGAAGGAATGGTTGAGACCACCGGCCGGGCGGCCTTCCCCGGCCTGGACGTGCTCGT
OVRT1_0061_A01.b : GATGGAAGGAATGGTTGAGACCACCGGCCGGGCGGCCTTCCCCGGCCTGGACGTGCTCGT
TCH01_0049_H09.b : xxxxxxxxxxxxxxxgGAGACCACCGGCCGGGCGGCCTTCCCCGGCCCGGACGTGCTCGT


20110601C-009786 : TTACCTGAAAGTTGCTGGGCTGCTGTTCCCGACCTCTGACTTCTGGCACCCGGTCGTCAC
                   ---------+---------+---------+---------+---------+---------+ 339
SPL01_0081_H01.b : TTACCTGAAAGTTGCTGGGCTGCTGTTCCCGACCTCTGACTTCTGGCACCCGGTCGTCAC
SMG01_0061_F05.b : TTACCTGAAAGTTGCTGGGCTGCTGTTCCCGACCTCTGACTTCTGGCACCCGGTCGTCAC
OVRT1_0061_A01.b : TTACCTGAAAGTTGCTGGGCTGCTGTTCCCGACCTCTGACTTCTGGCACCCGGTCGTCAC
TCH01_0049_H09.b : TTACCTGAAAGTTGCTGGGCTGCTGTTCCCGACCTCTGACTTCTGGCACCCGGTCGTCAC


20110601C-009786 : TCCTGCGCTGCTGTGTCTCAGCCAGCTGCTCACCAAGTGCCCGGTGCTGTCGCTCCCGGA
                   ---------+---------+---------+---------+---------+---------+ 399
SPL01_0081_H01.b : TCCTGCGCTGCTGTGTCTCAGCCAGCTGCTCACCAAGTGCCCGGTGCTGTCGCTCCCGGA
SMG01_0061_F05.b : TCCTGCGCTGCTGTGTCTCAGCCAGCTTCTCACCAAGTGCCCGGTGCTGTCGCTCCCGGA
OVRT1_0061_A01.b : TCCTGCGCTGCTGTGTCTCAGCCAGCTTCTCACCAAGTGCCCGGTGCTGTCGCTCCCGGA
TCH01_0049_H09.b : TCCTGCGCTGCTGTGTCTCAGCCAGCTGCTCACCAAGTGCCCGGTGCTGTCGCTCCCGGA


20110601C-009786 : CGTGGTGAAGGGTCTCTTCGTGTGCTGCTTGTTCCTGGACTACGTGTCCCTGTCCCAGAG
                   ---------+---------+---------+---------+---------+---------+ 459
SPL01_0081_H01.b : CGTGGTGAAGGGTCTCTTCGTGTGCTGCTTGTTCCTGGACTACGTGTCCCTGTCCCAGAG
SMG01_0061_F05.b : CGTGGTGAAGGGTCTCTTCGTGTGCTGCTTGTTCCTGGACTACGTGTCCCTGTCCCAGAG
OVRT1_0061_A01.b : CGTGGTGAAGGGTCTCTTCGTGTGCTGCTTGTTCCTGGACTACGTGTCCCTGTCCCAGAG
TCH01_0049_H09.b : CGTGGTGAAGGGTCTCTTCGTGTGCTGCTTGTTCCTGGACTACGTGTCCCTGTCCCAGAG


20110601C-009786 : ATTCATACCTGAGCTGCTTAATTTCCTCCTTGGGATCCTTTACATCGCAGCTCCAGGGAG
                   ---------+---------+---------+---------+---------+---------+ 519
SPL01_0081_H01.b : ATTCATACCTGAGCTGCTTAATTTCCTCCTTGGGATCCTTTACATCGCAGCTCCAGGGAG
SMG01_0061_F05.b : ATTCATACCTGAGCTGCTTAATTTCCTCCTTGGGATCCTTTACATCGCAGCTCCAGGGAG
OVRT1_0061_A01.b : ATTCATACCTGAGCTGCTTAATTTCCTCCTTGGGATCCTTTACATCGCAGCTCCAGGGAG
TCH01_0049_H09.b : ATTCATACCTGAGCTGCTTAATTTCCTCCTTGGGATCCTTTACATCGCAGCTCCAGGGAG


20110601C-009786 : GCCAGGCCAGGGTTACAGCCTGGTGCCCCCGTTCAGAGCCCTCGGGAAGAACGCCGGGCT
                   ---------+---------+---------+---------+---------+---------+ 579
SPL01_0081_H01.b : GCCAGGCCAGGGTTACAGCCTGGTGCCCCCGTTCAGAGCCCTCGGGAAGAACGCCGGGCT
SMG01_0061_F05.b : GCCAGGCCAGGGTTACAGCCTGGTGCCCCCGTTCAGAGCCCTCGGGAAGAACGCCGGGCT
OVRT1_0061_A01.b : GCCAGGCCAGGGTTACAGCCTGGTGCCCCCGTTCAGAGCCCTCGGGAAGAACGCCGGGCT
TCH01_0049_H09.b : GCCAGGCCAGGGTTACAGCCTGGTGCCCCCGTTCAGAGCCCTCGGGAAGAACGCCGGGCT


20110601C-009786 : GCTCTGGGTTTCCGACGCAGAGGACGTGGCCACGTGGCAGAGGAGGAGCCTCTCGCTCCG
                   ---------+---------+---------+---------+---------+---------+ 639
SPL01_0081_H01.b : GCTCTGGGTTTCCGACGCAGAGGACGTGGCCACGTGGCAGAGGAGGAGCCTCTCGCTCCG
SMG01_0061_F05.b : GCTCTGGGTTTCCGACGCAGAGGACGTGGCCACGTGGCAGAGGAGGAGCCTCTCGCTCCG
OVRT1_0061_A01.b : GCTCTGGGTTTCCGACGCAGAGGACGTGGCCACGTGGCAGAGGAGGAGCCTCTCGCTCCG
TCH01_0049_H09.b : GCTCTGGGTTTCCGACGCAGAGGACGTGGCCACGTGGCAGAGGAGGAGCCTCTCGCTCCG


20110601C-009786 : TTGGGCAGGGAGCTGGAAGGCGCAGACGAGGACGGAGGCCAACCACACCAGACTGTCCTG
                   ---------+---------+---------+---------+---------+---------+ 699
SPL01_0081_H01.b : TTGGGCAGGGAGCTGGAAGGCGCAGACGAGGACGGAGGCCAACCACACCAGACTGTCCTG
SMG01_0061_F05.b : TTGGGCAGGGAGCTGGAAGGCGCAGACGAGGACGGAGGCCAACCACACCAGACTGTCCTG
OVRT1_0061_A01.b : TTGGGCAGGGAGCTGGAAGGCGCAGACGAGGACGGAGGCCAACCACACCAGACTGTCCTG
TCH01_0049_H09.b : TTGGGCAGGGAGCTGGAAGGCGCAGACGAGGACGGAGGCCAACCACACCAGACTGTCCTG


20110601C-009786 : CCTGGCCGTGTGTCTGGCCCTGGTGAAGCGCTGTGTGCTCCTGTACGGCGCGCTGCCAGC
                   ---------+---------+---------+---------+---------+---------+ 759
SPL01_0081_H01.b : CCTGGCCGTGTGTCTGGCCCTGGTGAAGCGCTGTGTGCTCCTGTACGGCGCGCTGCCAGC
SMG01_0061_F05.b : CCTGGCCGTGTGTCTGGCCCTGGTGAAGCGCTGTGTGCTCCTGTACGGCGCGCTGCCAGC
OVRT1_0061_A01.b : CCTGGCCGTGTGTCTGGCCCTGGTGAAGCGCTGTGTGCTCCTGTACGGCGCGCTGCCAGC
TCH01_0049_H09.b : CCTGGCCGTGTGTCTGGCCCTGGTGAAGCGCTGTGTGCTCCTGTACGGCGCGCTGCCAGC


20110601C-009786 : CTTCCACGACATCGTGAGGCCCCTGAAA*GCCCTCCTCGCCCAACACCTGGCCGACTGCA
                   ---------+---------+---------+---------+---------+---------+ 818
SPL01_0081_H01.b : CTTCCACGACATCGTGAGGCCCCTGAAAAGCCCTCCTCGCCCAAAACCTGGCCGACTGCA
SMG01_0061_F05.b : CTTCCACGACATCGTGAGGCCCCTGAAA*GCCCTCCTCGCCCAACACCCTGGCGACTGCA
OVRT1_0061_A01.b : CTCCCACGACATCGTGAGGCCCCTGAAA*GCCCTCCTCGCCCAACACCTGGCCGACTGCA
TCH01_0049_H09.b : CTTCCACGACATCGTGAGGCCCCTGAAA*GCCCTCCTCGCCCAACACCTGGCCGACTGCA


20110601C-009786 : GCC*GCCCCCTCGAGATCCAGGAGCTGACCCGAGGCGTCCTGACGGACATGGAGAAGCAG
                   ---------+---------+---------+---------+---------+---------+ 877
SPL01_0081_H01.b : GCCCGCCCCCTCGAGATCCAGGAGCTGACCCGAGGCGTCCCGACGGACATGGAGAAagca
SMG01_0061_F05.b : GCCNG*CCCCTCGAGATCCAGGAGCTGAACCGAGGCGTCCTGACGGACATGGAGAAACAG
OVRT1_0061_A01.b : GCC*GCCCCCTCGAGATCCAGGAGCTGACCCGAGGCGTCCTGACGGACATGGAGAAGCAG
TCH01_0049_H09.b : GCC*GCCCCCTCGAGATCCAGGAGCTGACCCGAGGCGTCCTGACGGACATGGAGAAGCAG


20110601C-009786 : CCGACGCGCTGCCGGCCGCTGGTCTGCGAGAAGAGCAAGCCCGTGCCGCTGAAGCTGTTC
                   ---------+---------+---------+---------+---------+---------+ 937
SPL01_0081_H01.b : cccgacgcgctgcccggccgctgttctgccagaagagcaagccccgtgccgctgaagctg
SMG01_0061_F05.b : CCGACGCGCTGCCGGCCGCTGGTCTGCAA*AAGAGCAAGCCCGTGCCGCTGAAGCTGTTC
OVRT1_0061_A01.b : CCGACGCGCTGCCGGCCGCTGGTCTGCGAGAAGAGCAAGCCCGTGCCGCTGAAGCTGTTC
TCH01_0049_H09.b : CCGACGCGCTGCCGGCCGCTGGTCTGCGAGAAGAGCAAGCCCGTGCCGCTGAAGCTGTTC


20110601C-009786 : ACCCCCCGGCTGGTCAGAGTCCTGGAGTTTGGGAGGAAGCAGGGGAGCAGCAGGGAGGAG
                   ---------+---------+---------+---------+---------+---------+ 997
SPL01_0081_H01.b : ttcacccccccggctggggcgattcctggaattggggaagaaaccaggggaacacccggg
SMG01_0061_F05.b : ACCCCccggctggtcaaaatcctgnattttggaagaancaggggacaccagggaggaaca
OVRT1_0061_A01.b : ACCCCCCGGCTGGTCAAAGTCCTGGAAGTTGGGAGGAAGCAGGGGAacaaccaggaagga
TCH01_0049_H09.b : ACCCCCCGGCTGGTCAGAGTCCTGGAGTTTGGGAGGAAGCAGGGGAGCAGCAGGGAGGAG


20110601C-009786 : CAGGAGCGGAGGAGACTGATCCACAAACACAAGCGAGAGTTCAAGGGCGCCGTCCGCGAG
                   ---------+---------+---------+---------+---------+---------+ 1057
SPL01_0081_H01.b :                                                            
SMG01_0061_F05.b : ggaccggaggaaatgatccccaaccccagccaaagtcaagggcgccgtccggagatccgc
OVRT1_0061_A01.b : acaggagcggaaggaaactgatccacaaaacccagcgagagtttcaagccgcccttcccc
TCH01_0049_H09.b : CAGGAGCGGAGGAGACTGATCCACAAACACAAGCGAGAGTTCAAGGGCGCCGTCCGCGAG


20110601C-009786 : ATCCGCAAAGACAACCAGTTCCTGGCCCGGATG...........................
                   ---------+---------+---------+---------+---------+---------+ 1090
SPL01_0081_H01.b :                                                             
SMG01_0061_F05.b : agggacaacatttctggcccgatgcactccccaaatcgggaacggaccggaaaaaacgga
OVRT1_0061_A01.b : agaatccccaaggacaaccagtttcctggccccgaagcacctccccaaaatccgggaacg
TCH01_0049_H09.b : ATCCGCAAAGACAACCAGTTCCTGGCCCGGATGcagcttcgcgagatccggggaacggac


20110601C-009786 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
SPL01_0081_H01.b :                                                             
SMG01_0061_F05.b : agggaacccttttaaccctggccacaggaggggatggaggttcaaaagaaaaattcaaaa
OVRT1_0061_A01.b : gggacccgaaaaaaaaccggaagggaaacaaccttttttaaaccgtggccccccaggaag
TCH01_0049_H09.b : gcggaaagaaagcggaaggtgagcagcttttttacagcctggcccaccagaagggcgagg


20110601C-009786 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
SPL01_0081_H01.b :                                                             
SMG01_0061_F05.b : aatcaaaagaacttctaggcctaggcaggggtctcttttgttcctaaatccgaaagggtc
OVRT1_0061_A01.b : ggcaagtggaaaggccttaaaaagaaaaaatttccaaaaaaaatccaaacagggaccttc
TCH01_0049_H09.b : ggaaggctctgaaaaagaaaaatttccaaaaataaatccaacaaagagctgctgactgtg


20110601C-009786 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
SPL01_0081_H01.b :                                                             
SMG01_0061_F05.b : gcccgggaaccccctgaaaggggaaggaaaattttttccccaaccccttaaaacctttat
OVRT1_0061_A01.b : ttaactgcccctgagggccagggggggttcttccggttttggtctcggtgggaaacttcg
TCH01_0049_H09.b : cccctgaggtcagggggcgttctccgggccttggtcccggtcgaaattcccgggacgggg


20110601C-009786 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
SPL01_0081_H01.b :                                                             
SMG01_0061_F05.b : ttgttaccgggggaacactcttgggataaattttcccaccacaaaaaaaaggtggggggg
OVRT1_0061_A01.b : gaaaggggtccttgtcccgggggaaaaccccccctcttaaaaaccgggaaaatggaataa
TCH01_0049_H09.b : acccgtcccgggtgaaaacccgcccctgcgaaaaccggggaaaggtgaaatgacctttgt


20110601C-009786 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
SPL01_0081_H01.b :                                                             
SMG01_0061_F05.b : ctttatgggacacctttgaggtaaaaggcttnnntttgnnnnggggacaaaaaatgggct
OVRT1_0061_A01.b : catctttttttctcccccaaaaaaccccttttta                         
TCH01_0049_H09.b : tcttccccccaaaaaaacccctta                                   


20110601C-009786 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1090
SPL01_0081_H01.b :                                                             
SMG01_0061_F05.b : aaacttccgtannnnnnnnt                                       
OVRT1_0061_A01.b :                                                             
TCH01_0049_H09.b :