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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-009829

Length: 862

Sequence:  [FASTA format sequence]
GGCGGGGTCG CTGGCGTCCT ACCGTGTCGG GCTCGGTTGC AGACTCGTGT GTGTCCCGGC
CGCGGCGGGC GGGAGGCGCG GTCATGCCTC GGTATTACGA GGACAAGCCG GAGGGCGGCG
CGTGCGCGGG CGTGAAGGAG GACCTGGGCG CGTGTCTGTT GCAGTCGGAC TGCGTGCTCC
AGGAAGGAAA ATCCCCTCGA CAGTGTCTGA AGGAAGGAAG ATGCAAAGCT TTGCAATACT
CATTTTTTGA GTGTAAAAGA TCAATGTTAG ATGCCAGATC AAGATTCAGA GGAAGAAAAG
GATATTGATA CTGCTGTGTT GAAACCAAGA TGAAAACAAC AGAGAATTTC TTCTGGCCTT
TGAAACAGAG AAACCAAAAT AAGAAACAGA CTTTTCGTCA CATCTGTTCT ATTGAACCAG
TTTTTCCCTC CTCGGAACAC TAAAGAAAAT GAATGAGTTC TGGTTTTCAG TATGTATAAA
GTAAATGATT CTCTCTCTCT TTTTTTTTTT TTAAATTTTA ATTTTTTCCA ATTCTCTTGT
TCTAAATAAT TTTTAGGAGA ATTAATTGAA CAGTTGTGGG CTGGGAACAT CATAGATGTG
TTTTAAGAAT TGTTCTGAAG CACAGAAGAT GGAAAGACTT TATTTTCAAA CTTGACTCTT
CAACCAGTTG ATACAGTTTG TACATCCTTT GGGAATGCTG TGAAGGCCAC TGAGGGGACT
ATTAAAATCA ACATGGAGTC TGGTGAGATG TCTGTCTGGA AAGTTTAGGA TAAAGCTTTT
TTAGTCAGTC TGTACTATTT AGTTCTAAAA TAAATTGTGT TTGATTTCTT GGAGACGAAA
TGCTTCTTTG CATTAATTCC CT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		COA5	protein C2orf64 [Homo sapiens].	142	5e-34	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		6330578E17Rik	hypothetical protein LOC76178 [Mus musculus].	154	1e-37	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC611656	PREDICTED: similar to CG13018-PA [Canis familiaris].	155	5e-38	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		C11H2ORF64	hypothetical protein LOC614794 [Bos taurus].	153	2e-37	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100524554	PREDICTED: uncharacterized protein C2orf64 homolog [Sus scrofa].	132	3e-38	O

Alignment:      TOP

20110601C-009829 : ..........................................................GG
                   ---------+---------+---------+---------+---------+---------+ 2
CBLT1_0100_G08.b : nnncgacgtgagaggccxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGG
OVRM1_0221_B06.b :                gagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0039_B12.b :                                  gcgttgtcxxxxxxxxxxxxxxxxxxx
SPLT1_0023_B08.b :                                              nnnccgcaggaagag


20110601C-009829 : CGGGGTCGCTGGCGTCCTACCGTGTCGGGCTCGGTTGCAGACTCGTGTGTGTCCCGGCCG
                   ---------+---------+---------+---------+---------+---------+ 62
CBLT1_0100_G08.b : CGGGGTCGCTGGCGTCCTACCGTGTCGGGCTCGGTTGCAGACTCGTGTGTGTCCCGGCCG
OVRM1_0221_B06.b : xxxxxxxxxxxxxxxctTACCGTGTCGGGCTCGGTTGCAGACTCGTGTGTGTCCCGGCCG
LVRM1_0039_B12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGTGTGTCCCGGCCG
SPLT1_0023_B08.b : gccgtxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgGTGTGTGTCCCCGCCG


20110601C-009829 : CGGCGGGCGGGAGGCGCGGTCATGCCTCGGTATTACGAGGACAAGCCGGAGGGCGGCGCG
                   ---------+---------+---------+---------+---------+---------+ 122
CBLT1_0100_G08.b : CGGCGGGCGGGAGGCGCGGTCATGCCTCGGTATTACGAGGACAAGCCGGAGGGCGGCGCG
OVRM1_0221_B06.b : CGGCGGGCGGGAGGCGCGGTCATGCCTCGGTATTACGAGGACAAGCCGGAGGGCGGCGCG
LVRM1_0039_B12.b : CGGCGGGCGGGAGGCGCGGTCATGCCTCGGTATTACGAGGACAAGCCGGAGGGCGGCGCG
SPLT1_0023_B08.b : CGGCGGGCGGGAGGCGCGGTCATGCCTCGGTATTACGAGGACAAGCCGGAGGGCGGCGCG


20110601C-009829 : TGCGCGGGCGTGAAGGAGGACCTGGGCGCGTGTCTGTTGCAGTCGGACTGCGTGCTCCAG
                   ---------+---------+---------+---------+---------+---------+ 182
CBLT1_0100_G08.b : TGCGCGGGCGTGAAGGAGGACCTGGGCGCGTGTCTGTTGCAGTCGGACTGCGTGCTCCAG
OVRM1_0221_B06.b : TGCGCGGGCGTGAAGGAGGACCTGGGCGCGTGTCTGTTGCAGTCGGACTGCGTGCTCCAG
LVRM1_0039_B12.b : TGCGCGGGCGTGAAGGAGGACCTGGGCGCGTGTCTGTTGCAGTCGGACTGCGTGCTCCAG
SPLT1_0023_B08.b : TGCGCGGGCGTGAAGGAGGACCTGGGCGCGTGTCTGTTGCAGTCGGACTGCGTGCTCCAG


20110601C-009829 : GAAGGAAAATCCCCTCGACAGTGTCTGAAGGAAGGAAGATGCAAAGCTTTGCAATACTCA
                   ---------+---------+---------+---------+---------+---------+ 242
CBLT1_0100_G08.b : GAAGGAAAATCCCCTCGACAGTGTCTGAAGGAAGGAAGCTGCAAAGCTTTGCAATACTCA
OVRM1_0221_B06.b : GAAGGAAAATCCCCTCGACAGTGTCTGAAGGAAGGAAGATGCAAAGCTTTGCAATACTCA
LVRM1_0039_B12.b : GAAGGAAAATTCCCTCGACAGTGTCTGAAGGAAGGAAGATGCAAAGCTTTGCAATACTCA
SPLT1_0023_B08.b : GAAGGAAAATCCCCTCGACAGTGTCTGAAGGAAGGAAGCTGCAAAGCTTTGCAATACTCA


20110601C-009829 : TTTTTTGAGTGTAAAAGATCAATGTTAGATGCCAGATCAAGATTCAGAGGAAGAAAAGGA
                   ---------+---------+---------+---------+---------+---------+ 302
CBLT1_0100_G08.b : TTTTTTGAGTGTAAAAGATCAATGTTAGATGCCAGATCAAGATTCAGAGGAAGAAAAGGA
OVRM1_0221_B06.b : TTTTTTGAGTGTAAAAGATCAATGTTAGATGCCAGATCAAGATTCAGAGGAAGAAAAGGA
LVRM1_0039_B12.b : TTTTTTGAGTGTAAAAGATCAATGTTAGATGCCAGATCAAGATTCAGAGGAAGAAAAGGA
SPLT1_0023_B08.b : TTTTTTGAGTGTAAAAGATCAATGTTAGATGCCAGATCAAGATTCAGAGGAAGAAAAGGA


20110601C-009829 : TATTGATACTGCTGTGTTGAAACCAAGATGAAAACAACAGAGAATTTCTTCTGGCCTTTG
                   ---------+---------+---------+---------+---------+---------+ 362
CBLT1_0100_G08.b : TATTGATACTGCTGTGTTGAAACCAAGATGAAAACAACAGAGAATTTCTTCTGGCCTTTG
OVRM1_0221_B06.b : TATTGATACTGCTGTGTTGAAACCAAGATGAAAACAACAGAGAATTTCTTCTGGCCTTTG
LVRM1_0039_B12.b : TATTGATACTGCTGTGTTGAAACCAAGATGAAAACAACAGAGAATTTCTTCTGGCCTTTG
SPLT1_0023_B08.b : TATTGATACTGCTGTGTTGAAACCAAGATGAAAACAACAGAGAATTTCTTCTGGCCTTTG


20110601C-009829 : AAACAGAGAAACCAAAATAAGAAACAGACTTTTCGTCACATCTGTTCTATTGAACCAGTT
                   ---------+---------+---------+---------+---------+---------+ 422
CBLT1_0100_G08.b : AAACAGAGAAGCCAAAATAAGAAACAGACTTTTCGTCACATCTGTTCTATTGAACCAGTT
OVRM1_0221_B06.b : AAACAGAGAAACCAAAATAAGAAACAGACTTTTCGTCACATCTGTTCTATTGAACCAGTT
LVRM1_0039_B12.b : AAACAGAGAAACCAAAATAAGAAACAGACTTTTCGTCACATCTGTTCTATTGAACCAGTT
SPLT1_0023_B08.b : AAACAGAGAAACCAAAATAAGAAACAGACTTTTCGTCACATCTGTTCTATTGAACCAGTT


20110601C-009829 : TTTCCCTCCTCGGAACACTAAAGAAAATGAATGAGTTCTGGTTTTCAGTATGTATAAAGT
                   ---------+---------+---------+---------+---------+---------+ 482
CBLT1_0100_G08.b : TTTCCCTCCTCGGAACACTAAAGAAAATGAATGAGTTCTGGTTTTCAGTATGTATAAAGT
OVRM1_0221_B06.b : TTTCCCTCCTCGGAACACTAAAGAAAATGAATGAGTTCTGGTTTTCAGTATGTATAAAGT
LVRM1_0039_B12.b : TTTCCCTCCTCGGAACACTAAAGAAAATGAATGAGTTCTGGTTTTCAGTATGTATAAAGT
SPLT1_0023_B08.b : TTTCCCTCCTCGGAACACTAAAGAAAATGAATGAGTTCTGGTTTTCAGTATGTATAAAGT


20110601C-009829 : AAATGATTCTCTCTCTCT*TTTTTTTTTTTTAAATTTTAATTTTTTCCAATTCTCTTGTT
                   ---------+---------+---------+---------+---------+---------+ 541
CBLT1_0100_G08.b : AAATGATTCTCTCTCTCTCttttttttttttaaattttaattttttCCAATTCTCTTGTT
OVRM1_0221_B06.b : AAATGATTCTCTCTCTCt*ttttttttttttaa*ttttaattttttCCAATTCTCTTGTT
LVRM1_0039_B12.b : AAATGATTCTCTCTCTCt*tttttttttttttaattttaattttttCCAATTCTCTTGTT
SPLT1_0023_B08.b : AAATGATTCTCTCTCTCt*tttttttttttaaaattttaattttttCCAATTCTCTTGTT


20110601C-009829 : CTAAATAATTTTTAGGAGAATTAATTGAACAGTTGTGGGCTGGGAACATCATAGATGTGT
                   ---------+---------+---------+---------+---------+---------+ 601
CBLT1_0100_G08.b : CTAAATAATTTTTAGGAGAATTAATTGAACAGTTGTGGGCTGGGAACATCATAGATGTGT
OVRM1_0221_B06.b : CTAAATAATTTTTAGGAGAATTAATTGAACAGTTGTGGGCTGGGAACATCATANATGTGT
LVRM1_0039_B12.b : CTAAATAATTTTTAGGAGAATTAATTGAACAGTTGTGGGCTGGGAACATCATAGATGTGT
SPLT1_0023_B08.b : CTAAATAATTTTTAGGAGAATTAATTGAACAGTTGTGGGCTGGGAACATCATAGATGTGT


20110601C-009829 : TTTAAGAATTGTTCTGAAGCACAGAAGATGGAAAGACTTTATTTTCAAACTTGACTCTTC
                   ---------+---------+---------+---------+---------+---------+ 661
CBLT1_0100_G08.b : TTTAAGAATTGTTCTGAAGCACAGAAGATGGAAAGACTTTATTTTCAAACTTGACTCTTC
OVRM1_0221_B06.b : TTTAAGAATTGTTCTGAAGCACAGAAGATGGAAAGACTTTATTTTCAAACTTGACTCTTC
LVRM1_0039_B12.b : TTTAAGAATTGTTCTGAAGCACAGAAGATGGAAAGACTTTATTTTCAAACTTGACTCTTC
SPLT1_0023_B08.b : TTTAAGAATTGTTCTGAAGCACAGAAGATGGAAAGACTTTATTTTCAAACTTGACTCTTC


20110601C-009829 : AACCAGTTGATACAGTTTGTACATCCTTTGGGAATGCTGTGAAGGCCACTGAGGGGACTA
                   ---------+---------+---------+---------+---------+---------+ 721
CBLT1_0100_G08.b : AACCAGTTGATACAGTTTGTACATCCTTTGGGAATGCTGTGAAGGCCACTGAGGGGACTA
OVRM1_0221_B06.b : AACCAGTTGATACAGTTTGTACATCCTTTGGGAATGCTGTGAAGGCCCACTGAGGGACTA
LVRM1_0039_B12.b : AACCAGTTGATACAGTTTGTACATCCTTTGGGAATGCTGTGAAGGCCACTGAGGGGACTA
SPLT1_0023_B08.b : AACCAGTTGATACAGTTTGTACATCCTTTGGGAATGCTGTGAAGGCTACTGAGGGGACTA


20110601C-009829 : TTAAAATCAACATGGAGTCTGGTGAGATGTCTGTCTGGAAAGTTTAGGATAAAGCTTTTT
                   ---------+---------+---------+---------+---------+---------+ 781
CBLT1_0100_G08.b : TTAAAATCAACATGGAGTCTGGTGAGATGTCTGTCTGGAAAGTTTAGGATAAAGCTTTTT
OVRM1_0221_B06.b : TTAAAATCACCATGGACCCTGGTGAGATGTCTGTCTGGGAAATTTAGGATA        
LVRM1_0039_B12.b : TTATAATCAACATGGACCCTGGTGAGATGTCTGTCTGGAAAGTTTAGGATAAAGCTTTTT
SPLT1_0023_B08.b : TTAAAATCAACATGGAGTCTGGTGAGATGTCTGTCTGGAAAGTTTAGGATAAAGCTTTTT


20110601C-009829 : TAGTCAGTCTGTACTATTTAGTTCTAAAATAAATTGTGTTTGATTTCTTGGAGACGAAAT
                   ---------+---------+---------+---------+---------+---------+ 841
CBLT1_0100_G08.b : TAGTCAGTCTGTACTATTTAGTTCTAAAATAAATTGTGTTTGATTTCTTGGAGACGAAAT
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b : agtcagct                                                   
SPLT1_0023_B08.b : TAGTCAGTCTGTACTATTTAGTTCTAAAATA*ATTGTGTTTGATTTCTTGGaaaaaaaaa


20110601C-009829 : GCTTCTTTGCATTAATTCCCT.......................................
                   ---------+---------+---------+---------+---------+---------+ 862
CBLT1_0100_G08.b : GCTTCTTTGCATTAATTCCCTgaagtaccctcaaatatttctatcacccattagggctag
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b :                                                             
SPLT1_0023_B08.b : aaaaaaaaaaacaaaaaaaangaacnnccaaaaacaannnnnnnaccccccgcaaccccc


20110601C-009829 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 862
CBLT1_0100_G08.b : ctggatgcaaagcctgggattaaatgtcagggctccctgcctccatctcttgactatttt
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b :                                                             
SPLT1_0023_B08.b : cnacccccgcggcccgccccccgcacacctcaggaagaggggagaatcggaacaaaaaaa


20110601C-009829 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 862
CBLT1_0100_G08.b : tgtttctggcctggttttcgggcgggccggcgttaattaagggaaaaagccagtgttctc
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b :                                                             
SPLT1_0023_B08.b : acaaaggcgtggaaaaagaacccccccccaaacgggggaggaaagtttttttttaaatat


20110601C-009829 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 862
CBLT1_0100_G08.b : aaaagttcccttcttttaaatttggattccaaaggaggaaaatttcccctcttcccaggg
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b :                                                             
SPLT1_0023_B08.b : ttaagaggcgacccacaataacccacaaattagacacctttattttttacagcctatggg


20110601C-009829 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 862
CBLT1_0100_G08.b : gccaggggttaattctcaaaaggatctttctctgccgtgattactgccttttaatagaca
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b :                                                             
SPLT1_0023_B08.b : ttttttggttttttttccggggggggggggacttttttcaacaaataactcccttaggcc


20110601C-009829 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 862
CBLT1_0100_G08.b : ccctctgtggaaaaaggaatagaacatctttttgcccgtttggggcctacccccataatt
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b :                                                             
SPLT1_0023_B08.b : gtgcacgctctgtccttcatactccccttctctctccgtggcacaacggataccccttcg


20110601C-009829 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 862
CBLT1_0100_G08.b : tttactcttgcgagaacacgtggaagaaaaacccgtttgctccagagaatccaaccactg
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b :                                                             
SPLT1_0023_B08.b : tgggccgatgttgtcttttcacgggtaaggatcttctaatgggtaagaggtaaattgact


20110601C-009829 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 862
CBLT1_0100_G08.b : atcacttttttggtgctacggggagtctgaactattagtttgaacagatcacttctatct
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b :                                                             
SPLT1_0023_B08.b : atctgtggtggtgcggcgcgttaggggtgctttctttcttcatttcccgcccgaaaggta


20110601C-009829 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 862
CBLT1_0100_G08.b : cctacttacaatgagccgaaaaagatttctgttttttagtcagaagtgaacaacctcctc
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b :                                                             
SPLT1_0023_B08.b : taccgactaggcagcagacgcacacatatggcttgttgaacggttcaccattaactctaa


20110601C-009829 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 862
CBLT1_0100_G08.b : ttcttg                                                     
OVRM1_0221_B06.b :                                                             
LVRM1_0039_B12.b :                                                             
SPLT1_0023_B08.b : cgggatgttgttgggctatgtctgattgctgcagtgtcccg