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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-009833

Length: 748

Sequence:  [FASTA format sequence]
GCTTGTCCCC TGCCGCTTGC CGTCTGCGCA GACATGGCGG CCACCTCGCT CCCTGCATGG
CTGATCCTGA AGCCACGGGC CGGTACCTTT CGTGCCTTTT CTACGGCTAT GTCTCCGGCA
ACACGCTCTC CGAGACCAGC CCTGCGTACA ACAGAAAGAA CGTCCAAACC TGAAAGGGCA
CTGAGAAGAA AGGCACTACC TCCTAGGACA GAGAAAATGG CTGTTGACCA AGACTGGCCT
AGTGTTTACC CAGTTGCAGC ACCGTTTAAA CCTTCAGCGG TACCTCTTCC TGTCCGAATG
GGTTATCCAG TAAAAAGAGG GGTGCCCATG GCTAAGGAGG GAAATCTTGA GCTTTTAAAG
ATCCCCAATT TTCTGCATTT GACCCCTGTA GCAATTAAAA GGCACTGTGA AGCTCTTAAA
GATTTTTGTA CTGAGTGGCC AGCTGCCTTA GACAGTGATG AGAAATGCGA GAAGCACTTT
CCAATTGAAA TTGATACAGC TGATTATGTT TCAGCAGGAC CATCTATTCG AAACCCCAAA
GCACGAGTAG TAACCTTAAG GGTTAAACTT TCCAGTTTGA ATTTAGATGA TCATGCAAAG
AAGAAACTTA TTAAACTTGT AGGAGATCGA TACTGCAAGA GCACAGATGT GCTTACCATC
AAAACAGACA GGTGCCCTTT AAAGAGACAG AATTATGATT ATGCAGTATA TCTACTAACG
GTTTTATACC ATGAGTCCTG GAAAACTG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		MRPS35	28S ribosomal protein S35, mitochondrial isoform 1 precursor [Homo sapiens].	417	e-117	O
		MRPS35	28S ribosomal protein S35, mitochondrial isoform 2 precursor [Homo sapiens].	298	5e-85	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Mrps35	28S ribosomal protein S35, mitochondrial precursor [Mus musculus].	389	e-108	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC477660	PREDICTED: similar to mitochondrial ribosomal protein S35 [Canis familiaris].	401	e-112	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		MRPS35	28S ribosomal protein S35, mitochondrial precursor [Bos taurus].	441	e-124	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100514049	PREDICTED: 28S ribosomal protein S35, mitochondrial-like isoform 1 [Sus scrofa].	484	e-137	O
		LOC100514049	PREDICTED: 28S ribosomal protein S35, mitochondrial-like isoform 2 [Sus scrofa].	473	e-134	O

Alignment:      TOP

20110601C-009833 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0002_D03.b :                                                             
AMP01_0037_G11.b : ngggatatctatagcgatacttxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0062_B03.b :                                                             
AMP01_0062_B04.b :            nnnggagaaaaannttaggacactatgggctgctcxxxxxxxxxxxxxx


20110601C-009833 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0002_D03.b :                                                nagttgtcxxxxx
AMP01_0037_G11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0062_B03.b :                                                nagttgacxxxxx
AMP01_0062_B04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-009833 : ...............................................GCTTGTCCCCTGC
                   ---------+---------+---------+---------+---------+---------+ 13
OVRM1_0002_D03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTTGTCCCCTGC
AMP01_0037_G11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTGTCCCCTGC
OVRM1_0062_B03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgCTTGTCCCCTGC
AMP01_0062_B04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-009833 : CGCTTGCCGTCTGCGCAGACATGGCGGCCACCTCGCTCCCTGCATGGCTGATCCTGAAGC
                   ---------+---------+---------+---------+---------+---------+ 73
OVRM1_0002_D03.b : CGCTTGCCGTCTGCGCAGACATGGCGGCCACCTCGCTCCCTGCATGGCTGATCCTGAAGC
AMP01_0037_G11.b : CGCTTGCCGTCTGCGCAGACATGGCGGCCACCTCGCTCCCTGCATGGCTGATCCTGAAGT
OVRM1_0062_B03.b : CGCTTGCCGTCTGCGCAGACNTGGCGGCCACCTCGCTCCCTGCATGGCTGATCCTGAAGC
AMP01_0062_B04.b : xxCTTGCCGTCTGCGCAGGCATGGCGGCCACCTCGCTCCCTGCATGGCTGATCCTGAAGT


20110601C-009833 : CACGGGCCGGTACCTTTCGTGCCTTTTCTACGGCTATGTCTCCGGCAACACGCTCTCCGA
                   ---------+---------+---------+---------+---------+---------+ 133
OVRM1_0002_D03.b : CACGGGCCGGTACCTTTCGTGCCTTTTCTACGGCTATGTCTCCGGCAACACGCTCTCCGA
AMP01_0037_G11.b : CACGGGCCGGTACCTTTCGTGCCTTTTCTACGGCTATGTCTCCGGCAACACGCTCTCCGA
OVRM1_0062_B03.b : CACGGGCCGGTACCTTTCGTGCCTTTTCTACGGCTATGTCTCCGGCAACACGCTCTCCGA
AMP01_0062_B04.b : CACGGGCCGGTACCTTTCGTGCCTTTTCTACGGCTATGTCTCCGGCAACACGCTCTCCGA


20110601C-009833 : GACCAGCCCTGCGTACAACAGAAAGAACGTCCAAACCTGAAAGGGCACTGAGAAGAAAGG
                   ---------+---------+---------+---------+---------+---------+ 193
OVRM1_0002_D03.b : GACCAGCCCTGCGTACAACAGAAAGAACGTCCAAACCTGAAAGGGCACTGAGAAGAAAGG
AMP01_0037_G11.b : GACCAGCCCTGCGTACAACAGAAAGAACGTCCAAACCTGAAAGGGCACTGAGAAGAAAGG
OVRM1_0062_B03.b : GACCAGCCCTGCGTACAACAGAAAGAACGTCCAAACCTGAAAGGGCACTGAGAAGAAAGG
AMP01_0062_B04.b : GACCAGCCCTGCGTACAACAGAAAGAACGTCCAAACCTGAAAGGGCACTGAGAAGAAAGG


20110601C-009833 : CACTACCTCCTAGGACAGAGAAAATGGCTGTTGACCAAGACTGGCCTAGTGTTTACCCAG
                   ---------+---------+---------+---------+---------+---------+ 253
OVRM1_0002_D03.b : CACTACCTCCTAGGACAGAGAAAATGGCTGTTGACCAAGACTGGCCTAGTGTTTACCCAG
AMP01_0037_G11.b : CACTACCTCCTAGGACAGAGAAAATGGCTGTTGACCAAGACTGGCCTAGTGTTTACCCAG
OVRM1_0062_B03.b : CACTACCTCCTAGGACAGAGAAAATGGCTGTTGACCAAGACTGGCCTAGTGTTTACCCAG
AMP01_0062_B04.b : CACTACCTCCTAGGACAGAGAAAATGGCTGTTGACCAAGACTGGCCTAGTGTTTACCCAG


20110601C-009833 : TTGCAGCACCGTTTAAACCTTCAGCGGTACCTCTTCCTGTCCGAATGGGTTATCCAGTAA
                   ---------+---------+---------+---------+---------+---------+ 313
OVRM1_0002_D03.b : TTGCAGCACCGTTTAAACCTTCAGCGGTACCTCTTCCTGTCCGAATGGGTTATCCAGTAA
AMP01_0037_G11.b : TTGCAGCACCGTTTAAACCTTCAGCGGTACCTCTTCCTGTCCGAATGGGTTATCCAGTAA
OVRM1_0062_B03.b : TTGCAGCACCGTTTAAACCTTCAGCGGTACCTCTTCCTGTCCGAATGGGTTATCCAGTAA
AMP01_0062_B04.b : TTGCAGCACCGTTTAAACCTTCAGCGGTACCTCTTCCTGTCCGAATGGGTTATCCAGTAA


20110601C-009833 : AAAGAGGGGTGCCCATGGCTAAGGAGGGAAATCTTGAGCTTTTAAAGATCCCCAATTTTC
                   ---------+---------+---------+---------+---------+---------+ 373
OVRM1_0002_D03.b : AAAGAGGGGTGCCCATGGCTAAGGAGGGAAATCTTGAGCTTTTAAAGATCCCCAATTTTC
AMP01_0037_G11.b : AAAGAGGGGTGCCCATGGCTAAGGAGGGAAATCTTGAGCTTTTAAAGATCCCCAATTTTC
OVRM1_0062_B03.b : AAAGAGGGGTGCCCATGGCTAAGGAGGGAAATCTTGAGCTTTTAAAGATCCCCAATTTTC
AMP01_0062_B04.b : AAAGAGGGGTGCCCATGGCTAAGGAGGGAAATCTTGAGCTTTTAAAGATCCCCAATTTTC


20110601C-009833 : TGCATTTGACCCCTGTAGCAATTAAAAGGCACTGTGAAGCTCTTAAAGATTTTTGTACTG
                   ---------+---------+---------+---------+---------+---------+ 433
OVRM1_0002_D03.b : TGCATTTGACCCCTGTAGCAATTAAAAGGCACTGTGAAGCTCTTAAAGATTTTTGTACTG
AMP01_0037_G11.b : TGCATTTGACCCCTGTAGCAATTAAAAGGCACTGTGAAGCCCTTAAAGATTTTTGTACTG
OVRM1_0062_B03.b : TGCATTTGACCCCTGTAGCAATTAAAAGGCACTGT*AAGCTCTTAAAGATTTTTGTACTG
AMP01_0062_B04.b : TGCATTTGACCCCTGTAGCAATTAAAAGGCACTGTGAAGCTCTTAAAGATTTTTGTACTG


20110601C-009833 : AGTGGCCAGCTGCCTTAGACAGTGATGAGAAATGCGAGAAGCACTTTCCAATTGAAATTG
                   ---------+---------+---------+---------+---------+---------+ 493
OVRM1_0002_D03.b : AGTGGCCAGCTGCCTTAGACAGTGATGAGAAATGCGAGAAGCACTTTCCAATTGAAATTG
AMP01_0037_G11.b : AGTGGCCAGCTGCCTTAGACAGTGATGAGAAATGCGAGAAGCACTTTCCCATTTGAATTG
OVRM1_0062_B03.b : AGTGGCCAGCTGCCTTAGACAGTGATGAGAAATACGAGAAGCACTTTCCAATTGAAATTG
AMP01_0062_B04.b : AGTGGCCAGCTGCCTTAGACAGTGATGAGAAATGCGAGAAGCACTTTCCNAATTGAATTG


20110601C-009833 : ATACAGCTGATTATGTTTCAGCAGGACCATCTATTCGAAACCCCAAAGCACGAGTAGTAA
                   ---------+---------+---------+---------+---------+---------+ 553
OVRM1_0002_D03.b : ATACAGCTGATTATGTTTCAGCAGGACCATCTATTCGAAACCCCAAAGCACGAGTAGTAA
AMP01_0037_G11.b : ATACAGCTGATTATGTTTCAGCAGGACCATCTATTCGAAACCCCAAAGCACGAGTAGTAA
OVRM1_0062_B03.b : ATACAGCTGATTATGTTTCAGCAGGACCATCTATTCGAAACCCCAAAGCACGAGTAGTAA
AMP01_0062_B04.b : ATACAGCTGATTATGTTTCAGCAGGACCATCTATTCGAAACCCCCAAGCACGAGTAGTAA


20110601C-009833 : CCTTAAGGGTTAAACTTTCCAGTTTGAATTTAGATGATCATGCAAAGAAGAAACTTATTA
                   ---------+---------+---------+---------+---------+---------+ 613
OVRM1_0002_D03.b : CCTTAAGGGTTAAACTTTCCAGTTTGAATTTAGATGATCATGCAAAGAAGAAACTTATTA
AMP01_0037_G11.b : CCTTTAGGGgttaaactttccagtttgattttagatgatcatgcaaagaaaaaactaatt
OVRM1_0062_B03.b : CCTTAAGGGTTAAACTTTCCAGTTTGAATTTAGATGATCATGCACAGAAGAAACTTATTA
AMP01_0062_B04.b : CCTTAAGGGT*AAACTTTCCAGTTNNGATTTAGATGATCATGCNAAGAAGAAACTTATTA


20110601C-009833 : AACTTGTAGGAGATCGATACTGCAAGAGCACAGATGTGCTTACCATCAAAACAGACAGGT
                   ---------+---------+---------+---------+---------+---------+ 673
OVRM1_0002_D03.b : AACTTGTAGGAGATCGATACTGGCAGAGCACAGATGTGCTTACCATCAAAACAGACAGGT
AMP01_0037_G11.b : aaacttggttagagatcgatactgccagaagcccgatgtgctttacatcaaaacagaaca
OVRM1_0062_B03.b : AACTTGTAGGAGATCGATACTGCAAGAGCACAGATGTGCTTACCATCANAACAGAACGGT
AMP01_0062_B04.b : A*CTTGTANGAGATCGATACTGGCAGAGCACAGATGTGCTTNACAATCAAACAGACAGGT


20110601C-009833 : GCCCT*TTAAAGAGACAGAATTATGATTATGCAGTATATCTACTAACGGTTTTATACCAT
                   ---------+---------+---------+---------+---------+---------+ 732
OVRM1_0002_D03.b : GCCCT*TTAAAGAGACAGAATTATGATTATGCAGTATATCTACTAACGGTTTTATACCAT
AMP01_0037_G11.b : ggtgcccttttaagaagacgaaatatggatattgccgttatatctactaacagttttaac
OVRM1_0062_B03.b : GCCCT*TTAAAGAGACAGAATTATGATTATGCAGTATATCTTCTAACGGTTTTATACCAT
AMP01_0062_B04.b : GGCCTTTTAAAGAGACNGAATTATGATTATGCCGTAATTCTACTTACAGGTTTTATCCAT


20110601C-009833 : GAGTCCTGGAAAACTG............................................
                   ---------+---------+---------+---------+---------+---------+ 748
OVRM1_0002_D03.b : GAGTCCTGGNAAACTGaagaatgggaa                                
AMP01_0037_G11.b : ccctggggtcctggaaaacctgaagaatggggaaaaaaaaaaaactgaaccccaccttgg
OVRM1_0062_B03.b : GAGTTCTGGGAAACTGgaagaagg                                   
AMP01_0062_B04.b : GAGTCCTGGAAAACTGaagaagggaaaaaaaaaaacttgaccaacctggaaaaaattatt


20110601C-009833 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 748
OVRM1_0002_D03.b :                                                             
AMP01_0037_G11.b : aaaaattttttttgggaaaaccccccccctcaaaaaaaaaaaccttcccggaaaaccctt
OVRM1_0062_B03.b :                                                             
AMP01_0062_B04.b : ttggaaaaccccccctcaaaaaaaaacttcgggaaacctttccaaattaagcggcgaaaa


20110601C-009833 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 748
OVRM1_0002_D03.b :                                                             
AMP01_0037_G11.b : cccccaaattaaggcctgccggaaaaaattcttagattttagttaaaacaacaacctcct
OVRM1_0062_B03.b :                                                             
AMP01_0062_B04.b : aatccaaattaataaaaaaaccccttggaaaaaaaaattaaaaaaccaaagttctgtttt


20110601C-009833 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 748
OVRM1_0002_D03.b :                                                             
AMP01_0037_G11.b : tgtggacctaaagagttttaaaaaattcccgaaagggtctgtttttttaatcctttaggg
OVRM1_0062_B03.b :                                                             
AMP01_0062_B04.b : ttcttaaaaaggggggaaatgaaaacccttccctccaaaaaccggagaaaatttaattgg


20110601C-009833 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 748
OVRM1_0002_D03.b :                                                             
AMP01_0037_G11.b : aaggaggggggaaaaaatgaaaattaccccttttccccagaaccaaaaaaatccggggga
OVRM1_0062_B03.b :                                                             
AMP01_0062_B04.b : cggacggggaaaaaaacccccttttttttttaggggggggaggttcctacgccccaagaa


20110601C-009833 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 748
OVRM1_0002_D03.b :                                                             
AMP01_0037_G11.b : aaaaaacctttttaaattttgggcggggaaccgtggaaaggaaaaaattgcccctggaaa
OVRM1_0062_B03.b :                                                             
AMP01_0062_B04.b : aagaaaaaaccgtttttcccccacaaaattttttctcctcccgggccgggggttataaat


20110601C-009833 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 748
OVRM1_0002_D03.b :                                                             
AMP01_0037_G11.b : ttttttaaatttttaaaagggagaagtggaaggt                         
OVRM1_0062_B03.b :                                                             
AMP01_0062_B04.b : ttttttttggggggaaaaaaaaaccccttcctcgcggggggggtttctcaccacccaaca


20110601C-009833 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 748
OVRM1_0002_D03.b :                                                             
AMP01_0037_G11.b :                                                             
OVRM1_0062_B03.b :                                                             
AMP01_0062_B04.b : accacccccct