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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-009942

Length: 840

Sequence:  [FASTA format sequence]
CGTGATGTGA GGGCGGGGGC GGGAACGAGT TGGGAACCCA AAACCTCAGT TCTGATTTTC
TGTTACTTGG GTCTCTGCTG CCTTTTCGTT CTCGAACCCC GCGCATCCAG GGAAAGGGGT
TTGGAGCTAG GAACTCGGGA AGCGACTAAG TGCGTGGACT TGAGGCTGTC CGGTGGCCCC
CAGCCGTCTC CCAATCCTTT TCCCTCACCA GACTTCCCGT CTGGTCATGG CGAGATTCTG
GGTCTGCGTA GCCGGCGCTG GCTTCTTTCT TGCATATCTG GTTTTACATT CGCATATTTG
TGGCTCTTCG CTCCCACTAC GTCTTCATTT TGCTTTTAAA TTTTCCTGGA GAGCTGAGGA
AATCCTTTAC CGGCTGGATG TGGATTGGCC CACGTATTCA GAATACTTTA CTGGAGCAAT
ATTTTGTGTT GCAGTTGATT CCCTCAACGA ATTGGTTTAT GTAGCCCAAA GAGGGGATAA
CATCCCAAAG GTATTAGTGT TCACAGAGGA TGGATATTTC CTACGAGCCT GGAATTACAC
AGTTGACACA CCTCATGGCA TATTTGCAGC CAGTACACTA CATGAACAAT CCGTCTGGAT
CACGGATGTA GGAAGTGGAT CGTATGGTCA TACCGTTAAA AAATACAATT CCTTTGGTGA
TCTTGTTCAA ATTTTGGGAA CACCAGGCAA AAAAGGCACT GGTTTGAACC CCTTGCAGTT
TGATAACCCT GCGGAATTAT TCGTAGAAGA CACGGGAGAT ATTTACATTG TAGACGGAGA
TGGAGGATTG AATAACAGAA TGATCAAATT GTCTCAGATT TCATGATCCT CTGGCTACGT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		NHLRC3	NHL repeat-containing protein 3 isoform a [Homo sapiens].	350	1e-96	O
		NHLRC3	NHL repeat-containing protein 3 isoform b [Homo sapiens].	232	4e-61	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Nhlrc3	NHL repeat-containing protein 3 precursor [Mus musculus].	324	4e-89	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC485999	PREDICTED: similar to CG15105-PA, isoform A isoform 5 [Canis familiaris].	347	6e-96	O
		LOC485999	PREDICTED: similar to CG15105-PA, isoform A isoform 6 [Canis familiaris].	224	8e-59	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		NHLRC3	NHL repeat-containing protein 3 [Bos taurus].	365	e-101	O
		NHLRC3	PREDICTED: NHL repeat containing 3-like [Bos taurus].	365	e-101	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100525123	PREDICTED: hypothetical protein LOC100525123 [Sus scrofa].	138	4e-33

Alignment:      TOP

20110601C-009942 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0121_G08.b :                                                             
DCI01_0044_E09.b :                nnggtatctaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0003_A11.b : gatcctactatgcgatatcttaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0177_A04.b :                                                             


20110601C-009942 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0121_G08.b :                                           nagttgtcxxxxxxxxxx
DCI01_0044_E09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0003_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0177_A04.b :                                                             


20110601C-009942 : ...........................................CGTGATGTGAGGGCGGG
                   ---------+---------+---------+---------+---------+---------+ 17
OVRM1_0121_G08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGTGATGTGAGGGCGGG
DCI01_0044_E09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0003_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0177_A04.b :                            cgttgtcxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-009942 : GGCGGGAACGAGTTGGGAACCCAAAACCTCAGTTCTGATTTTCTGTTACTTGGGTCTCTG
                   ---------+---------+---------+---------+---------+---------+ 77
OVRM1_0121_G08.b : GGCGGGAACGAGTTGGGAACCCAAAACCTCAGTTCTGATTTTCTGTTACTTGGGTCTCTG
DCI01_0044_E09.b : xxxxxxAACGAGTTGGGAACCCAAAACCTCAGTTCTGATTTTCTGTTACTTGGGTCTCTG
DCI01_0003_A11.b : xxxxxxAACGAGTTGGGAACCCAAAACCTCAGTTCTGATTTTCTGTTACTTGGGTCTCTG
LVRM1_0177_A04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxtggAGTTCTGATTTTCTGTTACTTGGGTCTCTG


20110601C-009942 : CTGCCTTTTCGTTCTCGAACCCCGCGCATCCAGGGAAAGGGGTTTGGAGCTAGGAACTCG
                   ---------+---------+---------+---------+---------+---------+ 137
OVRM1_0121_G08.b : CTGCCTTTTCGTTCTCGAACCCCGCGCATCCAGGGAAAGGGGTTTGGAGCTAGGAACTCG
DCI01_0044_E09.b : CTGCCTTTTCGTTCTCGAACCCCGCGCATCCAGGGAAAGGGGTTTGGAGCTAGGAACTCG
DCI01_0003_A11.b : CTGCCTTTTCGTTCTCGAACCCCGCGCATCCAGGGAAAGGGGTTTGGAGCTAGGAACTCG
LVRM1_0177_A04.b : CTGCCTTTTCGTTCTCGAACCCCGCGCATCCAGGGAAAGGGGTTTGGAGCTAGGAACTCG


20110601C-009942 : GGAAGCGACTAAGTGCGTGGACTTGAGGCTGTCCGGTGGCCCCCAGCCGTCTCCCAATCC
                   ---------+---------+---------+---------+---------+---------+ 197
OVRM1_0121_G08.b : GGAAGCGACTAAGTGCGTGGACTTGAGGCTGTCCGGTGGCCCCCAGCCGTCTCCCAATCC
DCI01_0044_E09.b : GGAAGCGACTAAGTGCGTGGACTTGAGGCTGTCCGGTGGCCCCCAGCCGCCTGCCAATCC
DCI01_0003_A11.b : GGAAGCGACTAAGTGCGTGGACTTGAGGCTGTCCGGTGGCCCCCAGCCGCCTGCCAATCC
LVRM1_0177_A04.b : GGAAGCGACTAAGTGCGTGGACTTGAGGCTGTCCGGTGGCCCCCAGCCGTCTCCCAATCC


20110601C-009942 : TTTTCCCTCACCAGACTTCCCGTCTGGTCATGGCGAGATTCTGGGTCTGCGTAGCCGGCG
                   ---------+---------+---------+---------+---------+---------+ 257
OVRM1_0121_G08.b : TTTTCCCTCACCAGACTTCCCGTCTGGTCATGGCGAGATTCTGGGTCTGCGTAGCCGGCG
DCI01_0044_E09.b : TTTTCCCTCACCAGACTTCCCGTCTGGTCATGGCGAGATTCTGGGTCTGCGTAGCCGGCG
DCI01_0003_A11.b : TTTTCCCTCACCAGACTTCCCGTCTGGTCATGGCGAGATTCTGGGTCTGCGTAGCCGGCG
LVRM1_0177_A04.b : TTTTCCCTCACCAGACTTCCCGTCTGGTCATGGCGAGATTCTGGGTCTGCGTAGCCGGCG


20110601C-009942 : CTGGCTTCTTTCTTGCATATCTGGTTTTACATTCGCATATTTGTGGCTCTTCGCTCCCAC
                   ---------+---------+---------+---------+---------+---------+ 317
OVRM1_0121_G08.b : CTGGCTTCTTTCTTGCATATCTGGTTTTACATTCGCATATTTGTGGCTCTTCGCTCCCAC
DCI01_0044_E09.b : CTGGCTTCTTTCTTGCATATCTGGTTTTACATTCGCATATTTGTGGCTCTTCGCTCCCAC
DCI01_0003_A11.b : CTGGCTTCTTTCTTGCATATCTGGTTTTACATTCACATACTTGTGGCTCTTCGCTCCCAC
LVRM1_0177_A04.b : CTGGCTTCTTTCTTGCATATCTGGTTTTACATTCGCATATTTGTGGCTCTTCGCTCCCAC


20110601C-009942 : TACGTCTTCATTTTGCTTTTAAATTTTCCTGGAGAGCTGAGGAAATCCTTTACCGGCTGG
                   ---------+---------+---------+---------+---------+---------+ 377
OVRM1_0121_G08.b : TACGTCTTCATTTTGCTTTTAAATTTTCCTGGAGAGCTGAGGAAATCCTTTACCGGCTGG
DCI01_0044_E09.b : TACGTCTTCATTTTGCTTTTAAATTTTCCTGGAGAGCTGAGGAAATCCTTTACCGGCTGG
DCI01_0003_A11.b : TACGTCTTCATTTTGCTTTTAAATTTTCCTGGAGAGCTGAGGAAATCCTTTACCGGCTGG
LVRM1_0177_A04.b : TACGTCTTCATTTTGCTTTTAAATTTTCCTGGAGAGCTGAGGAAATCCTTTACCGGCTGG


20110601C-009942 : ATGTGGATTGGCCCACGTATTCAGAATACTTTACTGGAGCAATATTTTGTGTTGCAGTTG
                   ---------+---------+---------+---------+---------+---------+ 437
OVRM1_0121_G08.b : ATGTGGATTGGCCCACGTATTCAGAATACTTTACTGGAGCAATATTTTGTGTTGCAGTTG
DCI01_0044_E09.b : ATGTGGATTGGCCCACGTATTCAGAATACTTTACTGGAGCAACATTTTGTGTTGCAGTTG
DCI01_0003_A11.b : ATGTGGATTGGCCCACGTATTCAGAATACTTTACTGGAACAACATTTTGTGTTGCAGTTG
LVRM1_0177_A04.b : ATGTGGATTGGCCCACGTATTCAGAATACTTTACTGGAGCAATATTTTGTGTTGCAGTTG


20110601C-009942 : ATTCCCTCAACGAATTGGTTTATGTAGCCCAAAGAGGGGATAACATCCCAAAGGTATTAG
                   ---------+---------+---------+---------+---------+---------+ 497
OVRM1_0121_G08.b : ATTCCCTCAACGAATTGGTTTATGTAGCCCAAAGAGGGGATAACATCCCAAAGGTATTAG
DCI01_0044_E09.b : ATTCCCTCAACGAATTGGTTTATGTAGCCCAAAGAGGGGATAACATCCCAAAGGTATTAG
DCI01_0003_A11.b : ATTCCCTCAACGAATTGGTTTATGTAGCCCAGAGAGGGGATAACATCCCAAAGGTATTAG
LVRM1_0177_A04.b : ATTCCCTCAACGAATTGGTTTATGTAGCCCAAAGAGGGGATAACATCCCAAAGGTATTAG


20110601C-009942 : TGTTCACAGAGGATGGATATTTCCTACGAGCCTGGAATTACACAGTTGACACACCTCATG
                   ---------+---------+---------+---------+---------+---------+ 557
OVRM1_0121_G08.b : TGTTCACAGAGGATGGATATTTCCTACGAGCCTGGAATTACACAGTTGACACACCTCATG
DCI01_0044_E09.b : TGTTCACAGAGGATGGATATTTCCTACGAGCCTGGAATTACACAGTTGACACACCTCATG
DCI01_0003_A11.b : TGTTCACAGAGGATGGATATTTCCTACGAGCCTGGAATTACACAGTTGACACACCTCATG
LVRM1_0177_A04.b : TGTTCACAGAGGATGGATATTTCCTACGAGCCTGGAATTACACAGTTGACACACCTCATG


20110601C-009942 : GCATATTTGCAGCCAGTACACTACATGAACAATCCGTCTGGATCACGG*ATGTAGGAAGT
                   ---------+---------+---------+---------+---------+---------+ 616
OVRM1_0121_G08.b : GCATATTTGCAGCCAGTACACTACATGAACAATCCGTCTGGATCACGG*ATGTAGGAAGT
DCI01_0044_E09.b : GCATATTTGCAGCCAGTACACTACATGAACAATCCGTCTGGATCACGG*ATGTAGGAAGT
DCI01_0003_A11.b : GCATATTTGCAGCCAGTACACTACATGAACAATCCGTCTGGATCACGG*ATGTAGGAAGT
LVRM1_0177_A04.b : GCATATTTGCAGCCAGTACACTACATGAACAATCCGTCTGGATCACGGGATGTACGAAGT


20110601C-009942 : GGATCGTATGGTCATACCGTTAAAAAATACAATTCCTTTGGTGATCTTGTTCAAATTTTG
                   ---------+---------+---------+---------+---------+---------+ 676
OVRM1_0121_G08.b : GGATCCTATGGTCATACCGTTAAAAAATACAATTCCTTTGGTGATCTTGTTCAAATTTTT
DCI01_0044_E09.b : GGATCGTATGGTCATACCGTTAAAAAATACAATTCCTTTGGTGATCTTGTTCAAATTTTG
DCI01_0003_A11.b : GGATCGTATGGTCATACCGTTAAAAAATACAATTCCCTTGGTGATCTTGTTCAAATTTTG
LVRM1_0177_A04.b : GGATCCTATGGTCATACCGTTAAAAAATACAATTCCTTTGGTGATCTTGTTCACATTTTG


20110601C-009942 : GGAACACCAGGCAAAAAAGGCACTGGTTTGAACCCCTTGCAGTTTGATAACCCTGCGGAA
                   ---------+---------+---------+---------+---------+---------+ 736
OVRM1_0121_G08.b : GGGACACCAGGGCAAAAAGGCACTGGTTTGAACCCATTGCAGTTTGATTACCCTGCGGA*
DCI01_0044_E09.b : GGAACACCAGGCAAAAAAGGCACTGGTTTGAACCCCTTGCAGTTTGATAACCCTGCGGAA
DCI01_0003_A11.b : GGAACACCAGGCAAAAAAGGCACTGGTTTGCACCCCTTGCAGTTTGATAACCCTGCGGAA
LVRM1_0177_A04.b : GGAACACCAGCT*AAAAAGGCACTGGTTTGACCCCATTGCAATTTGCTAACCCTGCtgca


20110601C-009942 : TTATTCGTAGAAGACACGGGAGATATTTACATTGTAGACGGAGATGG*AGGATTGAATAA
                   ---------+---------+---------+---------+---------+---------+ 795
OVRM1_0121_G08.b : TTATACGTAGCAGACACGGGAGATATTTACATgt                         
DCI01_0044_E09.b : TTATTCGTAGAAAACACGGGAGATATTTACATTGTAGACGGAGATGG*AGGATTGAATAA
DCI01_0003_A11.b : TTATTCGTAGAAGACACGGGAGATATTTACATTGTAGACGGAGATGGGAGGATGNAANTA
LVRM1_0177_A04.b : ttatacgtacaagacacgggaaatatct                               


20110601C-009942 : CAGAATGATCAAATTGTCTCA*GATTTCATGATCCTCTGGCTACGT..............
                   ---------+---------+---------+---------+---------+---------+ 840
OVRM1_0121_G08.b :                                                             
DCI01_0044_E09.b : CAGAATGATCAAATTGTCTCAAGATTTCATGATCCTCTGGCTACGTggagaaaatgggac
DCI01_0003_A11.b : CAGGATGATCAATTTGTCTCA*GATTTCATGATCCTCTGGCTACGTggaagaaatgggac
LVRM1_0177_A04.b :                                                             


20110601C-009942 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 840
OVRM1_0121_G08.b :                                                             
DCI01_0044_E09.b : agaaccggctaatttcacaatccctccagtgtgacgtttgattcctttgaacggtggtgg
DCI01_0003_A11.b : agaacccgctaagtttcacatccctcacagtgtgacggttgattccgttngacgggtgtg
LVRM1_0177_A04.b :                                                             


20110601C-009942 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 840
OVRM1_0121_G08.b :                                                             
DCI01_0044_E09.b : gtanctgaccgagccataaaaaaatcaggtgtttgataagacccggggaatgttaggatc
DCI01_0003_A11.b : ggtagccgaaccgagcaatanaagaaatcngggtgttgatcacgacccggggaagtgttt
LVRM1_0177_A04.b :                                                             


20110601C-009942 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 840
OVRM1_0121_G08.b :                                                             
DCI01_0044_E09.b : tgnatggatgttccctgaaaagggccatccccattcaattacccctgatggaaacgctgg
DCI01_0003_A11.b : agaaccttggattgatgtttcacggaagaggggccatcccattcccattaccgttggagg
LVRM1_0177_A04.b :                                                             


20110601C-009942 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 840
OVRM1_0121_G08.b :                                                             
DCI01_0044_E09.b : ataaancaagttaattctaccccccttaatcgaacggcccgccgggcgaaaatcggaaat
DCI01_0003_A11.b : gaagcgtttgaattaagcccagctgatctcagccccccttaatgccccgggccgccggtc
LVRM1_0177_A04.b :                                                             


20110601C-009942 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 840
OVRM1_0121_G08.b :                                                             
DCI01_0044_E09.b : gtctgggtcaccctccccctacgaatagccttaccctcttggagccccaaaaaaggaact
DCI01_0003_A11.b : ggaaaatcgtaatgttttggtatccccctccccagggaattg                 
LVRM1_0177_A04.b :                                                             


20110601C-009942 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 840
OVRM1_0121_G08.b :                                                             
DCI01_0044_E09.b : tttgtggaaaatcgaaaacaaaaaaaaattccgcggaaaattttccttcttcaagattct
DCI01_0003_A11.b :                                                             
LVRM1_0177_A04.b :                                                             


20110601C-009942 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 840
OVRM1_0121_G08.b :                                                             
DCI01_0044_E09.b : ttgtgaaacctggggagtaaaccctccttataaaagaaaa                   
DCI01_0003_A11.b :                                                             
LVRM1_0177_A04.b :