[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-010020
Length:
1,110
Sequence:
[FASTA format sequence]
TTAAATCCAC CAGAGAAGAT GGCTCTTGAT CCTTACACTG AACTCCGGAA GCAGCCTCTT
CGTAAGTATG TGACTCCAAC GGACTTTGAT CAACTGAAGC AGTTTCTCAC CTTTGACAAA
CAGGTCCTTC GATTCTATGC AATCTGGGAT GATACAGACA GCATGTTTGG TGAATGTCGG
ACCTACATCA TTCACTATTA TCTGATGGAC GACACAGTGG AAATTCTGGA GGTCCACGAA
CGGAATGACG GGAGAGACCC CTTCCCCCTC CTGATGAACC GCCAGCGCAT GCCCAAGGTT
TTGGTGGAGA ATGCAAAGAA CTTCCCTCAG TGTGTGCTGG AAATCTCTGA TCAGGAGGTG
CTGGAATGGT ACACCGCCAA GGACTTCATC GTCGGAAAGC CACTCACTAT GCTGGGGAGA
ACCTTCTTCA TTTATGACTG TGATCCATTT ACTCGGCAGT ATTACAAAGA GAAGTTTGGC
ATCTCCGATC TACCACGCAT TGACGTGAGC AAGAAGGAGC CGCCTCCTGT GAAACAGGAA
TTGCCTCCCT ATAATGGTTA TGGACTCATC GAAGACTCTG CTCAGAATTG CTTGGCTCTC
ATTCCAAAAG CTCCCAAAAA AGATGTCATT AAAGTGCTGA TGAATGACAA CAAGGTGCTT
CGTTATTTGG CTGCACTGGA ATCCCCCATC CCGGAAGACA AGGGCCGCCG GTTTGTCTTA
TCTTATTTTC TAGCCACTGA CATGATCAGT ATCTTTGAGC CTCCTGTTCG AAATTCAGGG
ATCATTGGGG GCAAGTACCT TGGCAGAACT AAAGTTGTCA AGCCCGACTC CTCCATGGAA
AACCCCATCT ACTATGGCCC CAGTGACTTC TTCATTGGTG CCGTGATTGA AGTGTTTGGC
CACCGGTTTG TCATCCTCGA TTCCGATGAC TATGTTTTGA AATACATGGA GAGCAACCCT
GCCCAGTTTT CCCCAGAAGC TCTCCTGTCA ATTCAGAACC ACATTCGAAG GCGAGACACT
CCTGCACTGG AACTGGACAG CCAGCGGACA GAAAAAGACC CAGGCACACA GGAACTAGAG
GTGCTGATTG ACACGATCCA GAAGCAGCTG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | EFHC1 | EF-hand domain-containing protein 1 isoform 2 [Homo sapiens]. | 694 | 0.0 | |
![]() |
![]() | EFHC1 | EF-hand domain-containing protein 1 isoform 1 [Homo sapiens]. | 694 | 0.0 | |
![]() |
![]() | EFHC2 | EF-hand domain-containing family member C2 [Homo sapiens]. | 226 | 2e-59 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | Efhc1 | EF-hand domain-containing protein 1 [Mus musculus]. | 638 | 0.0 | |
![]() |
![]() | Efhc2 | EF-hand domain-containing family member C2 [Mus musculus]. | 221 | 1e-57 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC474935 | PREDICTED: similar to EF-hand domain (C-terminal) containing 1 [Canis familiaris]. | 683 | 0.0 | |
![]() |
![]() | LOC480888 | PREDICTED: similar to EF-hand domain (C-terminal) containing 2 [Canis familiaris]. | 243 | 3e-64 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | EFHC1 | PREDICTED: EF-hand domain (C-terminal) containing 1 [Bos taurus]. | 703 | 0.0 | |
![]() |
![]() | EFHC1 | EF-hand domain-containing protein 1 [Bos taurus]. | 703 | 0.0 | |
![]() |
![]() | LOC100336399 | PREDICTED: CG11048-like [Bos taurus]. | 232 | 4e-61 | |
![]() |
![]() | LOC523590 | PREDICTED: CG11048-like [Bos taurus]. | 134 | 1e-31 | O |
![]() |
![]() | LOC523590 | PREDICTED: CG11048-like [Bos taurus]. | 134 | 1e-31 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | EFHC1 | PREDICTED: EF-hand domain-containing protein 1 [Sus scrofa]. | 712 | 0.0 | |
![]() |
![]() | EFHC2 | PREDICTED: EF-hand domain-containing family member C2 [Sus scrofa]. | 241 | 5e-64 | |
![]() |
![]() | LOC100622464 | PREDICTED: EF-hand domain-containing family member C2-like [Sus scrofa]. | 114 | 1e-25 | |
![]() |
![]() | LOC100620679 | PREDICTED: EF-hand domain-containing protein 1-like [Sus scrofa]. | 51.6 | 8e-07 | |
![]() |
![]() | LOC100624132 | PREDICTED: hypothetical protein LOC100624132 [Sus scrofa]. | 51.2 | 1e-06 | O |
|
|
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
TCH01_0094_F12.b : nnnaagctaggactaaaacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0088_F12.b :
TCH01_0048_F11.b :
TES01_0054_C12.b :
20110601C-010020 : ....................TTAAATCCACCAGAGAAGATGGCTCTTGATCCTTACACTG
---------+---------+---------+---------+---------+---------+ 40
TCH01_0094_F12.b : xxxxxxxxxxxxxxxxxxxxTTAAATCCACCAGAGAAGATGGCTCTTGATCCTTACACTG
TCH01_0088_F12.b :
TCH01_0048_F11.b :
TES01_0054_C12.b :
20110601C-010020 : AACTCCGGAAGCAGCCTCTTCGTAAGTATGTGACTCCAACGGACTTTGATCAACTGAAGC
---------+---------+---------+---------+---------+---------+ 100
TCH01_0094_F12.b : AACTCCGGAAGCAGCCTCTTCGTAAGTATGTGACTCCAACGGACTTTGATCAACTGAAGC
TCH01_0088_F12.b :
TCH01_0048_F11.b :
TES01_0054_C12.b :
20110601C-010020 : AGTTTCTCACCTTTGACAAACAGGTCCTTCGATTCTATGCAATCTGGGATGATACAGACA
---------+---------+---------+---------+---------+---------+ 160
TCH01_0094_F12.b : AGTTTCTCACCTTTGACAAACAGGTCCTTCGATTCTATGCAATCTGGGATGATACAGACA
TCH01_0088_F12.b : nnttgctaggactatgacxxxxx
TCH01_0048_F11.b :
TES01_0054_C12.b :
20110601C-010020 : GCATGTTTGGTGAATGTCGGACCTACATCATTCACTATTATCTGATGGACGACACAGTGG
---------+---------+---------+---------+---------+---------+ 220
TCH01_0094_F12.b : GCATGTTTGGTGAATGTCGGACCTACATCATTCACTATTATCTGATGGACGACACAGTGG
TCH01_0088_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtcga
TCH01_0048_F11.b :
TES01_0054_C12.b :
20110601C-010020 : AAATTCTGGAGGTCCACGAACGGAATGACGGGAGAGACCCCTTCCCCCTCCTGATGAACC
---------+---------+---------+---------+---------+---------+ 280
TCH01_0094_F12.b : AAATTCTGGAGGTCCACGAACGGAATGACGGGAGAGACCCCTTCCCCCTCCTGATGAACC
TCH01_0088_F12.b : AAATTCTGGAGGTCCACGAACGGAATGACGGGAGAGACCCCTTCCCCCTCCTGATGAACC
TCH01_0048_F11.b : nggctaggactatgacagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TES01_0054_C12.b :
20110601C-010020 : GCCAGCGCATGCCCAAGGTTTTGGTGGAGAATGCAAAGAACTTCCCTCAGTGTGTGCTGG
---------+---------+---------+---------+---------+---------+ 340
TCH01_0094_F12.b : GCCAGCGCATGCCCAAGGTTTTGGTGGAGAATGCAAAGAACTTCCCTCAGTGTGTGCTGG
TCH01_0088_F12.b : GCCAGCGCATGCCCAAGGTTTTGGTGGAGAATGCAAAGAACTTCCCTCAGTGTGTGCTGG
TCH01_0048_F11.b : xxxxxxxxxxxxxxxAGGTTTTGGTGGAGAATGCAAAGAACTTCCCTCAGTGTGTGCTGG
TES01_0054_C12.b : tctactgtggctagatcgacctctgcctgtgacgAGAACTTCCCTCAGTGTGTGCTGG
20110601C-010020 : AAATCTCTGATCAGGAGGTGCTGGAATGGTACACCGCCAAGGACTTCATCGTCGGAAAGC
---------+---------+---------+---------+---------+---------+ 400
TCH01_0094_F12.b : AAATCTCTGATCAGGAGGTGCTGGAATGGTACACCGCCAAGGACTTCATCGTCGGAAAGC
TCH01_0088_F12.b : AAATCTCTGATCAGGAGGTGCTGGAATGGTACACCGCCAAGGACTTCATCGTCGGAAAGC
TCH01_0048_F11.b : AAATCTCTGATCAGGAGGTGCTGGAATGGTACACCGCCAAGGACTTCATCGTCGGAAAGC
TES01_0054_C12.b : AAATCTCTGATCAGGAGGTGCTGGAATGGTACACCGCCAAGGACTTCATCGTCGGAAAGC
20110601C-010020 : CACTCACTATGCTGGGGAGAACCTTCTTCATTTATGACTGTGATCCATTTACTCGGCAGT
---------+---------+---------+---------+---------+---------+ 460
TCH01_0094_F12.b : CACTCACTATGCTGGGGAGAGCCTTCTTCATTTATGACTGTGATCCATTTACTCGGCAGT
TCH01_0088_F12.b : CACTCACTATGCTGGGGAGAACCTTCTTCATTTATGACTGTGATCCATTTACTCGGCAGT
TCH01_0048_F11.b : CACTCACTATGCTGGGGAGAACCTTCTTCATTTATGACTGTGATCCATTTACTCGGCAGT
TES01_0054_C12.b : CACTCACTATGCTGGGGAGAACCTTCTTCATTTATGACTGTGATCCATTTACTCGGCAGT
20110601C-010020 : ATTACAAAGAGAAGTTTGGCATCTCCGATCTACCACGCATTGACGTGAGCAAGAAGGAGC
---------+---------+---------+---------+---------+---------+ 520
TCH01_0094_F12.b : ATTACAAAGAGAAGTTTGGCATCTCCGATCTACCACGCATTGACGTGAGCGAGAAGGAGC
TCH01_0088_F12.b : ATTACAAAGAGAAGTTTGGCATCTCCGATCTACCACGCATTGACGTGAGCAAGAAGGAGC
TCH01_0048_F11.b : ATTACAAAGAGAAGTTTGGCATCTCCGATCTACCACGCATTGACGTGAGCAAGAAGGAGC
TES01_0054_C12.b : ATTACAAAGAGAAGTTTGGCATCTCCGATCTACCACGCATTGACGTGAGCAAGAAGGAGC
20110601C-010020 : CGCCTCCTGTGAAACAGGAATTGCCTCCCTATAATGGTTATGGACTCATCGAAGACTCTG
---------+---------+---------+---------+---------+---------+ 580
TCH01_0094_F12.b : CGCCTCCTGTGAAACAGGAATTGCCTCCCTATAATGGTTATGGACTCATCGAAGACTCTG
TCH01_0088_F12.b : CGCCTCCTGTGAAACAGGAATTGCCTCCCTATAATGGTTATGGACTCATCGAAGACTCTG
TCH01_0048_F11.b : CGCCTCCTGTGAAACAGGAATTGCCTCCCTATAATGGTTATGGACTCATCGAAGACTCTG
TES01_0054_C12.b : CGCCTCCTGTGAAACAGGAATTGCCTCCCTATAATGGTTATGGACTCATCGAAGACTCTG
20110601C-010020 : CTCAGAATTGCTTGGCTCTCATTCCAAAAGCTCCCAAAAAAGATGTCATTAAAGTGCTGA
---------+---------+---------+---------+---------+---------+ 640
TCH01_0094_F12.b : CTCAGAATTGCTTGGCTCTCATTCCAAAAGCTCCCAAAAAAGATGTCATTAAAATGCTGA
TCH01_0088_F12.b : CTCAGAATTGCTTGGCTCTCATTCCAAAAGCTCCCAAAAAAGATGTCATTAAAGTGCTGA
TCH01_0048_F11.b : CTCAGAATTGCTTGGCTCTCATTCCAAAAGCTCCCAAAAAAGATGTCATTAAAGTGCTGA
TES01_0054_C12.b : CTCAGAATTGCTTGGCTCTCATTCCAAAAGCTCCCAAAAAAGATGTCATTAAAATGCCGA
20110601C-010020 : TGAATGACAACAAGGTGCTTCGTTATTTGGCTGCACTGGAATCCCCCATCCCGGAAGACA
---------+---------+---------+---------+---------+---------+ 700
TCH01_0094_F12.b : TGAATGACAACAAGGTGCTTCGTTATTTGGCTGCACTGGAATCCCCCATCCCGGAAGACA
TCH01_0088_F12.b : TGAATGACAACAAGGTGCTTCGTTATTTGGCTGCACTGGAATCCCCCATCCCGGAAGACA
TCH01_0048_F11.b : TGAATGACAACAAGGTGCTTCGTTATTTGGCTGCACTGGAATCCCCCATCCCGGAAGACA
TES01_0054_C12.b : TGAATGACAACAAGGTGCTTCGTTATTTGGCTGCACTGGAATCCCCCATCCCGGAAGACA
20110601C-010020 : AGGGCCGCCGGTTTGTCTTATCTTATTTTCTAGCCACTGACATGATCAGTATCTTTGAGC
---------+---------+---------+---------+---------+---------+ 760
TCH01_0094_F12.b : AGGGCCGCCGGTTTGTCTTATCTTATTTTCTAGCCACTGACATGATCAGTATCTTTGAGC
TCH01_0088_F12.b : AGGGCCGCCGGTTTGTCTTATCTTATTTTCTAGCCACTGACATGATCAGTATCTTTGAGC
TCH01_0048_F11.b : AGGGCCGCCGGTTTGTCTTATCTTATTTTCTAGCCACTGACATGATCAGTATCTTTGAGC
TES01_0054_C12.b : AGGGCCGCCGGTTTGTCTTATCTTATTTTCTAGCCACTGACATGATCAGTATCTTTGAGC
20110601C-010020 : CTCCTGTTCGAAATTCAGGGATCATTGGGGGCAAGTACCTTGGCAGAACTAAAGTTGTCA
---------+---------+---------+---------+---------+---------+ 820
TCH01_0094_F12.b : CTCCTGTTCGAAATTCAGGGATCATTGNGGGCAAGTACCTTGGCAGAACTAAAGTTGTCA
TCH01_0088_F12.b : CTCCTGTTCGAAATTCAGGGATCATTGGGGGCAAGTACCTTGGCAGAACTAAAGTTGTCA
TCH01_0048_F11.b : CTCCTGTTCGAAATTCAGGGATCATTGGGGGCAAGTACCTTGGCAGAACTAAAGTTGTCA
TES01_0054_C12.b : CTCCTGTTCGAAATTCAGGGATCATTGGGGGCAAGTACCTTGGCAGAACTAAAGTTGTCA
20110601C-010020 : AGCCCGACTCCTCCATGGAAAACCCCATCTACTATGGCCCCAGTGACTTCTTCATTGGTG
---------+---------+---------+---------+---------+---------+ 880
TCH01_0094_F12.b : AGCCCGACTCCTCCATGGAAAACCCCATCTACTATGGCCCCAGTGACTTCTTCATTGGTG
TCH01_0088_F12.b : AGCCCGACTCCTCCATGGAAAACCCCATCTACTATGGCCCCAGTGACTTCTTCATTGGTG
TCH01_0048_F11.b : AGCCCGACTCCTCCATGGAAAACCCCATCTACTATGGCCCCAGTGACTTCTTCATTGGTG
TES01_0054_C12.b : AGCCCGACTCCTCCATGGAAAACCCCATCTACTATGGCCCCAGTGACTTCTTCATTGGTG
20110601C-010020 : CCGTGATTGAAGTGTTTGGCCACCGGTTTGTCATCCTCGATTCCGATGACTATGTTTTGA
---------+---------+---------+---------+---------+---------+ 940
TCH01_0094_F12.b : CCCGTGATGAAGTGTTTGGCCACGGNTTTGTCATCCTCGATTCCGATGACTATGTTTTGA
TCH01_0088_F12.b : CCGTGATTGAAGTGTTTGGCCACCGGTTTGTCATCCTCGATTCCGATGACTATGTTTTGA
TCH01_0048_F11.b : CCGTGATTGAAGTGTTTGGCCACCGGTTTGTCATCCTCGATTCCGATGACTATGTTTTGA
TES01_0054_C12.b : CCGTGATTGAAGTGTTTGGCCACCGGTTTGTCATCCTCGATTCCGATGACTATGTTTTGA
20110601C-010020 : AATACATGGAGAGCAACCCTGCCCAGTTTTCCCCAGAAGCTCTCCTGTCAATTCAGAACC
---------+---------+---------+---------+---------+---------+ 1000
TCH01_0094_F12.b : AATACATGGAGAGCAACCCTGCCCAGTTTTTCCCAGAAGCTCctctggtcattcagaaca
TCH01_0088_F12.b : AATACATGGAGAGCAACCCTGCCCAGTTTTCCCCAGAAGCTCTCCTGTCAATTCAGAACC
TCH01_0048_F11.b : AATACATGGAGAGCAACCCTGCCCAGTTTTCCCCAGAAGCTCTCCTGTCAATTCAGAACC
TES01_0054_C12.b : AATACATGGAGAGCAACCCTGCCCAGTTTTCCCCAGAAGCTCTCCTGTCAATTCAGAACC
20110601C-010020 : ACATTCGAAGGCGAGACACTCCTGCACTGGAACTGGACAGCCAGCGGACAGAAAAAGACC
---------+---------+---------+---------+---------+---------+ 1060
TCH01_0094_F12.b : cattcgaaagcgagacctcctgcactggactggacagcagcggaagaaaaggaccagcca
TCH01_0088_F12.b : ACATTTCGAGGCGAGACACTCCTGCACTGGAACTGGACAGCCAGCGGACAGAAAAAGACC
TCH01_0048_F11.b : ACATTCGAAGGCGAGACACTCCTGCACTGGAACTGGACAGCCAGCGGACAGAAAAGGACC
TES01_0054_C12.b : ACATTCGAAGGCGAGACACTCCTGCACTGGAACTGGACAGCCAGCGGACAGAAAAggaac
20110601C-010020 : CAGGCACACAGGAACTAGAGGTGCTGATTGACACGATCCAGAAGCAGCTG..........
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b : accggactagagggtctgatgaccgtatcaaaaccctggaaatcacccggagggaagctc
TCH01_0088_F12.b : CAGGCAACAGGAAACTAGAG*TGCTGATTGACACGATCCAAAAGCAGCTGaaagatcacc
TCH01_0048_F11.b : CAGGCACACAGGAACTAGAGGTGCTGATTGACACGATCCAGAAGCAGCTGaaagatcacc
TES01_0054_C12.b : caggcacacaggaactaaaggtgctgattgaccccatccaaaaccacctgaaagatcacc
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b : ccaaggcctttggattttaaccgaggctcggaacctgtaaggggaaattcttaaactgcg
TCH01_0088_F12.b : cttgcagggacagcatccgcgaggccttttcgattatgaccccgaagcttccggatcctt
TCH01_0048_F11.b : cgtgcagggacagcatccgcaagggctttcggatttatgacacggaagcttccagatacg
TES01_0054_C12.b : cgtgccgggacagcatccgcgaggcctttcggatttttaacacggaggcttcaaggaacc
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b : actgtggccccgg
TCH01_0088_F12.b : ggaaaggaaaaattctttaaaatcgggaatttcttgacctccccggggataattctctga
TCH01_0048_F11.b : tggacaggaagacattcttttaaatctgcgactctctgcacctcccggtgaaagattccc
TES01_0054_C12.b : tggacagggaaactttctttaaaatctgcgactctctgcacttcccgggggagaattccc
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b :
TCH01_0088_F12.b : taaagaactcctccggagtggctcccccggaaaccaaaaatggaattttccagctttttc
TCH01_0048_F11.b : tgattaaagacctcgccaggattgctcccccggaaacgacaaggatggactattccaact
TES01_0054_C12.b : gaaataaggactcccccgggagttgcctccccggaaaccaaaaaaaggaactattccagt
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b :
TCH01_0088_F12.b : gcgctttctccccgagacttcttaaaacaaaacaacccttttttagtcaggccaccccac
TCH01_0048_F11.b : ttgcccccctttttccccctgacctgctgaagacaaaaacaacacctttcaaggtcaggg
TES01_0054_C12.b : ctttgtccgcccttttccccccttaaactgcctaagaacaaaaacacccacttttcaagg
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b :
TCH01_0088_F12.b : cttggtctttccaaaggcctttaaaaactcttaaaggagttcctttctgagactattccc
TCH01_0048_F11.b : cttacccccaccttgtggccctcctaaaaggcctttacgaactcttttaaaggaagtttc
TES01_0054_C12.b : ccaggcctaacccccccttgtggctcttccaaagagccctttcaaaaactcttgaaggga
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b :
TCH01_0088_F12.b : ccccacggaacccaatta
TCH01_0048_F11.b : ctttccgaaacttatattcccattccaccgaa
TES01_0054_C12.b : ggtttccttttctgagacccttattcccccctcccgcggagccccaatataaatgggatt
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b :
TCH01_0088_F12.b :
TCH01_0048_F11.b :
TES01_0054_C12.b : tttggggaaaaaaaacaaaaaaaaaaaaaagggcccttgtttccaactggtgggtgcgcc
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b :
TCH01_0088_F12.b :
TCH01_0048_F11.b :
TES01_0054_C12.b : ccttaaatttttaagaaaaacactccccctctccccgaaaggtaaaaaaaaaaaggccgt
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b :
TCH01_0088_F12.b :
TCH01_0048_F11.b :
TES01_0054_C12.b : ttggtctcaacttttctctcccccttatggtcacaaatattactctccactttctcataa
20110601C-010020 : ............................................................
---------+---------+---------+---------+---------+---------+ 1110
TCH01_0094_F12.b :
TCH01_0088_F12.b :
TCH01_0048_F11.b :
TES01_0054_C12.b : gagttttctctccctctgagggtgtgcaccacc