Assembly Overview:
TOP
BLAST on RefSeq (Human):
TOP
| | Locus | Definition | Score | E value | FL |
---|
 |
 | ADAT1 | tRNA-specific adenosine deaminase 1 [Homo sapiens]. | 488 | e-138 | O |
 |
 | ADARB1 | double-stranded RNA-specific editase 1 isoform 2 [Homo sapiens]. | 78.6 | 8e-15 | |
 |
 | ADARB1 | double-stranded RNA-specific editase 1 isoform 3 [Homo sapiens]. | 78.6 | 8e-15 | |
 |
 | ADARB1 | double-stranded RNA-specific editase 1 isoform 1 [Homo sapiens]. | 72 | 8e-13 | |
 |
 | ADARB1 | double-stranded RNA-specific editase 1 isoform 7 [Homo sapiens]. | 72 | 8e-13 | |
 |
 | ADARB2 | double-stranded RNA-specific editase B2 [Homo sapiens]. | 68.9 | 7e-12 | |
 |
 | ADAR | double-stranded RNA-specific adenosine deaminase isoform b [Homo sapiens]. | 59.7 | 4e-09 | |
 |
 | ADAR | double-stranded RNA-specific adenosine deaminase isoform d [Homo sapiens]. | 59.7 | 4e-09 | |
 |
 | ADAR | double-stranded RNA-specific adenosine deaminase isoform d [Homo sapiens]. | 59.7 | 4e-09 | |
 |
 | ADAR | double-stranded RNA-specific adenosine deaminase isoform c [Homo sapiens]. | 59.7 | 4e-09 | |
BLAST on RefSeq (Mouse):
TOP
| | Locus | Definition | Score | E value | FL |
---|
 |
 | Adat1 | tRNA-specific adenosine deaminase 1 [Mus musculus]. | 451 | e-127 | O |
 |
 | Adarb1 | double-stranded RNA-specific editase 1 isoform 2 [Mus musculus]. | 70.9 | 1e-12 | |
 |
 | Adarb1 | double-stranded RNA-specific editase 1 isoform 1 [Mus musculus]. | 69.7 | 3e-12 | |
 |
 | Adarb2 | double-stranded RNA-specific editase B2 [Mus musculus]. | 65.9 | 5e-11 | |
 |
 | Adar | double-stranded RNA-specific adenosine deaminase isoform 2 [Mus musculus]. | 54.7 | 1e-07 | |
 |
 | Adar | double-stranded RNA-specific adenosine deaminase isoform 1 [Mus musculus]. | 54.7 | 1e-07 | |
 |
 | Adar | double-stranded RNA-specific adenosine deaminase isoform 3 [Mus musculus]. | 54.7 | 1e-07 | |
BLAST on RefSeq (Dog):
TOP
| | Locus | Definition | Score | E value | FL |
---|
 |
 | LOC489706 | PREDICTED: similar to adenosine deaminase, tRNA-specific 1 [Canis familiaris]. | 521 | e-148 | O |
 |
 | LOC487809 | PREDICTED: similar to RNA-specific adenosine deaminase B1 isoform DRADA2a [Canis familiaris]. | 75.9 | 6e-14 | |
 |
 | LOC490442 | PREDICTED: similar to adenosine deaminase, RNA-specific isoform b [Canis familiaris]. | 60.5 | 2e-09 | |
 |
 | LOC487153 | PREDICTED: similar to Double-stranded RNA-specific editase B2 (dsRNA adenosine deaminase B2) (RNA dependent adenosine deaminase 3) (RNA editing deaminase 2) (RNA editing enzyme 2) [Canis familiaris]. | 56.6 | 4e-08 | |
BLAST on RefSeq (Cattle):
TOP
| | Locus | Definition | Score | E value | FL |
---|
 |
 | ADAT1 | tRNA-specific adenosine deaminase 1 [Bos taurus]. | 522 | e-148 | O |
 |
 | ADARB1 | PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Bos taurus]. | 76.6 | 3e-14 | |
 |
 | ADARB1 | PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Bos taurus]. | 76.6 | 3e-14 | |
 |
 | ADARB2 | double-stranded RNA-specific editase B2 [Bos taurus]. | 62 | 8e-10 | |
 |
 | ADARB2 | PREDICTED: adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Bos taurus]. | 62 | 8e-10 | |
 |
 | ADAR | PREDICTED: RNA adenosine deaminase-like [Bos taurus]. | 59.3 | 5e-09 | |
 |
 | ADAR | PREDICTED: adenosine deaminase, RNA-specific [Bos taurus]. | 59.3 | 5e-09 | |
BLAST on RefSeq (Pig):
TOP
| | Locus | Definition | Score | E value | FL |
---|
 |
 | ADAT1 | PREDICTED: tRNA-specific adenosine deaminase 1 [Sus scrofa]. | 625 | e-179 | O |
 |
 | LOC100154277 | PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific editase 1-like [Sus scrofa]. | 80.1 | 2e-15 | |
 |
 | LOC100521919 | PREDICTED: double-stranded RNA-specific editase B2-like [Sus scrofa]. | 65.9 | 3e-11 | |
 |
 | ADAR | PREDICTED: double-stranded RNA-specific adenosine deaminase, partial [Sus scrofa]. | 58.5 | 5e-09 | |
 |
 | LOC100524727 | PREDICTED: tRNA-specific adenosine deaminase 1-like [Sus scrofa]. | 57.8 | 9e-09 | O |
Alignment:
TOP
20110601C-010022 : ..........................................................GT
---------+---------+---------+---------+---------+---------+ 2
OVR01_0015_B11.b : gccctttagagggactattagaacaggtttggaaaaaatgctgggctgcgggaccgagGT
LVRM1_0080_E12.b : agttgaatxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0033_E11.b : nnnggcttaanaanggagtaacagct
CLNT1_0147_D05.b : nnnnccgtcagcgnacgxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-010022 : CCGGAAATTTCCTCGTGCACCGTCGGCCTCACTCGGCTCTCTTCCTCCCTTCGAGAGCGC
---------+---------+---------+---------+---------+---------+ 62
OVR01_0015_B11.b : CCGGAAATTTCCTCGTGCACCGTCGGCCTCACTCGGCTCTCTTCCTCCCTTCGAGAGCGC
LVRM1_0080_E12.b : xxxxxxxxxxxxcgtcacgtccgctgcgccgcgcggcctTCTTCCTCCCTTCGAGAGCGC
ADR01_0033_E11.b : ggtxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxctTCTTCCTCCCTTCGAGGGCGC
CLNT1_0147_D05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgcgcggtctTCTTCCTCCCTTCGAGAGCGC
20110601C-010022 : GTGTCGAGGAGGGCCTCAACACTAGCTCACACCATGTGGACGGCGGAT*GAGATTGCACG
---------+---------+---------+---------+---------+---------+ 121
OVR01_0015_B11.b : GTGTCGAGGAGGGCCTCAACACTAGCTCACACCACGTGGACGGCGGATCGAGATTGCACG
LVRM1_0080_E12.b : GTGTCGAGGAGGGCCTCAGCACTAGCTCACACCATGTGGACGGCGGAT*GAGATTGCACG
ADR01_0033_E11.b : GTGTCGAGGAGGGCCTCAGCACTAGCTCACACCATGTGGACGGCGGAT*GAGATTGCACG
CLNT1_0147_D05.b : GTGTCGAGGAGGGCCTCAACACTAGCTCACACCATGTGGACGGCGGAT*GAGATTGCACG
20110601C-010022 : GCTGTGTTACGAGCACTAT*GGGAGCAGGCT*GCCCAAGCAAGGGAAGCCTGAGCCCAAC
---------+---------+---------+---------+---------+---------+ 179
OVR01_0015_B11.b : GCCGTGTTACGAGCACTATCGGGAGCAGGCTCGCCCAAGCAAGGGAAGCCTGAGCCCAAC
LVRM1_0080_E12.b : GCTGTGTTACGAGCACTAT*GGGAGCAGGCT*GCCCAAGCAAGGGAAGCCTGAGCCCAAC
ADR01_0033_E11.b : GCTGTATTACGAGCACTAT*GGGAGCAGGCT*GCCCAAGCAAGGGAAGCCTGAGCCCAAC
CLNT1_0147_D05.b : GCTGTGTTACGAGCACTAT*GGGAGCAGGCT*GCCCAAGCAAGGGAAGCCTGAGCCCAAC
20110601C-010022 : CGTGAGTGGACGCT*GCTCGCAGCCGTGGTGAAGATACAACCTGCAGCTGACCAGGTCTG
---------+---------+---------+---------+---------+---------+ 238
OVR01_0015_B11.b : CGCGAGTGGACGCTCGCTCGCAGCCGTGGTGAAGATACAACCTGCAGCTGACCAGGTCTG
LVRM1_0080_E12.b : CGTGAGTGGACGCT*GCTCGCAGCCGTGGTGAAGATACAACCTGCAGCTGACCAGGTCTG
ADR01_0033_E11.b : CGTGAGTGGACGCT*GCTCGCAGCCGTGGTGAAGATACAACCTGCAGCTGACCAGGTCTG
CLNT1_0147_D05.b : CGCGAGTGGACGCT*GCTCGCAGCCGTGGTGAAGATACAACCTGCAGCTGACCAGGTCTG
20110601C-010022 : CGACTGCCCTGACAGACCCGTGCAAGTGACAAAAGAAGTTGTCTCAATGGGAACAGGAAC
---------+---------+---------+---------+---------+---------+ 298
OVR01_0015_B11.b : CGACTGCCCTGACAGACCCGTGCAAGTGACAAAAGAAGTTGTCTCAATGGGAACAGGAAC
LVRM1_0080_E12.b : CGACTGCCCTGACAGACCCGTGCAAGTGACAAAAGAAGTTGTCTCAATGGGAACAGGAAC
ADR01_0033_E11.b : CGACTGCCCTGACAGACCCGTGCAAGTGACAAAAGAAGTTGTCTCAATGGGAACAGGAAC
CLNT1_0147_D05.b : CGACTGCCCTGACAGACCCGTGCAAGTGACAAAAGAAGTTGTCTCAATGGGAACAGGAAC
20110601C-010022 : CAAATGCATAGGCCAGTCCAAAATGAGGAAGAGCGGAGACATCCTCAATGATAGCCATGC
---------+---------+---------+---------+---------+---------+ 358
OVR01_0015_B11.b : CAAATGCATAGGCCAGTCCAAAATGAGGAAGAGCGGAGACATCCTCAATGATAGCCATGC
LVRM1_0080_E12.b : CAAATGCATAGGCCAGTCCAAAATGAGGAAGAGCGGAGACATCCTCAATGATAGCCATGC
ADR01_0033_E11.b : CAAATGCATAGGCCAGTCCAAAATGAGGAAGAGCGGAGACATCCTCAATGATAGCCATGC
CLNT1_0147_D05.b : CAAATGCATAGGCCAGTCCAAAATGAGGAAGAGCGGAGACATCCTCAATGATAGCCATGC
20110601C-010022 : CGAGGTCATAGCCAGAAGAAGTTTCCAGAGGTACCTCCTCCATCAGCTGCACTTGGCGGT
---------+---------+---------+---------+---------+---------+ 418
OVR01_0015_B11.b : CGAGGTCATAGCCAGAAGAAGTTTCCAGAGGTACCTCCTCCATCAGCTGCACTTGGCGGT
LVRM1_0080_E12.b : CGAGGTCATAGCCAGAAGAAGTTTCCAGAGGTACCTCCTCCATCAGCTGCACTTGGCGGT
ADR01_0033_E11.b : CGAGGTCATAGCCAGAAGAAGTTTCCAGAGGTACCTCCTCCATCAGCTGCACTTGGCGGT
CLNT1_0147_D05.b : CGAGGTCATAGCCAGAAGAAGTTTCCAGAGGTACCTCCTCCATCAGCTGCACTTGGCGGT
20110601C-010022 : CACTCTGAAGGAGGGTAGCATCTTTGTCCCAGGAACTCAGAGAGGACTGTGGAAACTCAG
---------+---------+---------+---------+---------+---------+ 478
OVR01_0015_B11.b : CACTCTGAAGGAGGGTAGCATCTTTGTCCCAGGAACTCAGAGAGGACTGTGGAAACTCAG
LVRM1_0080_E12.b : CACTCTGAAGGAGGGTAGCATCTTTGTCCCAGGAACTCAGAGAGGACTGTGGAAACTCAG
ADR01_0033_E11.b : CACTCTGAAGGAGGGTAGCATCTTTGTCCCAGGAACTCAGAGAGGACTGTGGAAACTCAG
CLNT1_0147_D05.b : CACTCTGAAGGAGGGTAGCATCTTTGTCCCAGGAACTCAGAGAGGACTGTGGAAACTCAG
20110601C-010022 : ACCAGACACCTTGTTTGTGTTTTTCTCCAGCCATACACCCTGTGGCGATGCCTCCATCAT
---------+---------+---------+---------+---------+---------+ 538
OVR01_0015_B11.b : ACCAGACACCTTGTTTGTGTTTTTCTCCAGCCATACACCCTGTGGCGATGCCTCCATCAT
LVRM1_0080_E12.b : ACCAGACACCTTGTTTGTGTTTTTCTCCAGCCATACACCCTGTGGCGATGCCTCCATCAT
ADR01_0033_E11.b : ACCAGACACCTTGTTTGTGTTTTTCTCCAGCCATACACCCTGTGGCGATGCCTCCATCAT
CLNT1_0147_D05.b : ACCAGACACCTTGTTTGTGTTTTTCTCCAGCCATACACCCTGTGGCGATGCCTCCATCAT
20110601C-010022 : TCCAATGCTTGAGTCTGAAGATCAGCCTTGCTGTCCTGTCAGCAGAGATTGGGCCAATAA
---------+---------+---------+---------+---------+---------+ 598
OVR01_0015_B11.b : TCCAATACTTGAGTCTGAAGATCAGCCTTGCTGTCCTGTCAGCAGAGATTGGGCCAATAA
LVRM1_0080_E12.b : TCCNATGCTTGAGTCTGAAGATCAGCCTTGCTGTCCTGTCAGCAGAGATTGGGCCAATTA
ADR01_0033_E11.b : TCCAATGCTTGAGTCTGAAGATCAGCCTTGCTGTCCTGTCGGCAGAGATTGGGCCAATAA
CLNT1_0147_D05.b : TCCAATGCTTGAGTCTGAAGATCAGCCTTGCTGTCCTGTCAGCAGAGATTGGGCCAATAA
20110601C-010022 : CCCATCAGTGGAAGCCAATAATAACCTAAAAGCCCCCGAAGGTAAAAGGAAATGTGAAGA
---------+---------+---------+---------+---------+---------+ 658
OVR01_0015_B11.b : CCCATCAGTGGAAGCCAATAATAACCTAAAAGCCCCCGAAGGTAAAAGGAAATGTGAAGA
LVRM1_0080_E12.b : CCCATCAGCAGAAGCCAATAATAACCTAANAGCCCTCCAAGGTAANAGGAAATGTGAAGA
ADR01_0033_E11.b : CCCATCAGCAGAAGCCAATAATAACCTAAAAGCCCCCGAAGGTAAAAGGAAATGTGAAGA
CLNT1_0147_D05.b : CCCATCAGTGGAAGCCAATAATAACCTAAAAGCCCCCGAAGGTAAAAGGAAATGTGAAGA
20110601C-010022 : CCCAGATAGTCCTGGGACCAAAAAGACGAGGGTTGAGCCGGGGCCTCCTGATGGTATGAC
---------+---------+---------+---------+---------+---------+ 718
OVR01_0015_B11.b : CCCAGATAGTCCTGGGACCAAAAAGACGAGGGTTGAGCCGGGGCCTCCTGATGGTATGAC
LVRM1_0080_E12.b : CCCAGATAGTCCTGGGACCAAAAAGACGAGGCTTGAGCCGGGGCCCCCTGATGGTATGAC
ADR01_0033_E11.b : CCCAGATAGTCCTGGGACCAAAAAGACGAGGCTTGAGCCGGGGCCTCCTGATGGTATGAC
CLNT1_0147_D05.b : CCCAGATAGTCCTGGGACCAAAAAGACGAGGGTTGAGCCGGGGCCTCCTGATGGTATGAC
20110601C-010022 : TCACCATCAGAGTTTTGACTATCAGGAAAGTGGCCCAGTCCCACCAGATGTCAACAGCTC
---------+---------+---------+---------+---------+---------+ 778
OVR01_0015_B11.b : TCACCATCAGAGTTTTGACTATCAGGAAAGTGGCCCAGTCCCACCAGATGTCAACAGCTC
LVRM1_0080_E12.b : TCACCATCAGAGTTTTGACTATTACGAAAGTGGCCCAGTCCCACCAGAATGTCACAGCTC
ADR01_0033_E11.b : TCACCATCAGAGTTTTGACTATCAGGAAAGTGGCCCAGTCCCACCAGATGTNCACAGCTC
CLNT1_0147_D05.b : TCACCATCAGAGTTTTGACTATCAGGAAAGTGGCCCAGTCCCACCAGATGTCAACAGCTC
20110601C-010022 : TCATCTCACTGCAGAGGAACTGGCTACCGTCCCTGGAATGGCCCACAGTGGTGCCAAAGT
---------+---------+---------+---------+---------+---------+ 838
OVR01_0015_B11.b : TCATCTCACTGCAGAGGAACTGGCTACCGTCCCTGGAATGGCCCACAGTGGTGCCAAAGT
LVRM1_0080_E12.b : TCATCTCACTGCAGA
ADR01_0033_E11.b : TCATCTCACTGCAGAGGAACTGGCCACCGTCCCTGGAATGGCCCACAGTGGTGCCAAAGT
CLNT1_0147_D05.b : TCATCTCACTGCAGAGGAACTGGCTACCGTCCCTGGAATGGCCCACAGTGGTGCCCAAGT
20110601C-010022 : GGTGGACATTTATAGAACTGGAGCTAAGTGTGTGCCTGGAAAAGCTGGTGACTTGGGAGG
---------+---------+---------+---------+---------+---------+ 898
OVR01_0015_B11.b : GGTGGACATTTATAGAACTGGAGCTAAGTGTGTGCCTGGAGAAGCTGGTGACTTGGGAGG
LVRM1_0080_E12.b :
ADR01_0033_E11.b : GGTGGACATTTACAGAACTGGAGCTAAGTGTGTGCCTGGAGAAGCTGGTGACTTGnngag
CLNT1_0147_D05.b : GTTGGACATTTATAGAACTGGAGCTAAGTGTGTGCCTGGAAAAACTGGTGACTTGGGAGG
20110601C-010022 : GCCTGGTGCTGCGTATCACCAAGTAGGACTGCTCCGCGTGAAGCCAGGCCGAGGGGACAG
---------+---------+---------+---------+---------+---------+ 958
OVR01_0015_B11.b : GCCTGGTGCTGCGTATCACCAAGTAGGACTGCTCCGCGTGAAGCCAGGTCGAGGGGACAG
LVRM1_0080_E12.b :
ADR01_0033_E11.b : ggctggtgctgcgtatcaccagtagggctgctccgcatgaagccaggcgaggagacagga
CLNT1_0147_D05.b : GCCTGTTGCTTCGTATCACCAATTAG*ACTGCCCCGCGTGAAACCAGGCCGAGGGGACAG
20110601C-010022 : GACTTTGCTCATGNTCTGCAGTGACAAGTTGGCACGGTGGA...................
---------+---------+---------+---------+---------+---------+ 999
OVR01_0015_B11.b : GACTTTGCTCATGNTCTGCAGTGACAAGTTGGCACGGTGGAacgttcttnggatgccagg
LVRM1_0080_E12.b :
ADR01_0033_E11.b : cttgctcctgntctgcaatgacaattggcacggtggaacgttctggatgccaggggccct
CLNT1_0147_D05.b : GACTTgctcctgtcctggattgacaattggcacgggggaccttctttgatgccaaggggc
20110601C-010022 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVR01_0015_B11.b : ggcactgctgatgcactttctgggagagcctgtctaccttgtcagcctggg
LVRM1_0080_E12.b :
ADR01_0033_E11.b : gctgatgccttcctggaaaacccgtcacctgtcaccctggtcattggaaatgcccttaca
CLNT1_0147_D05.b : cacgctgaagctttcctggaaaacctggctcctttccccgggggtcttggaaagtgccct
20110601C-010022 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVR01_0015_B11.b :
LVRM1_0080_E12.b :
ADR01_0033_E11.b : ccccgaagcctgtccaaaacattatttaaaggggccgacattccggctttacccaagggt
CLNT1_0147_D05.b : tcacccagaaggcctgnnnnggggggggtaagagggcggaacctcccctttccaaaggtt
20110601C-010022 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVR01_0015_B11.b :
LVRM1_0080_E12.b :
ADR01_0033_E11.b : ttgggtttaaaaaggaaaatcccccttccaaatcttttttaaaaaaccccttgcgggggg
CLNT1_0147_D05.b : gggatttaaaaggaaaaaccccctcaattattttgaaaaacccctgtgtgggggagaaag
20110601C-010022 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVR01_0015_B11.b :
LVRM1_0080_E12.b :
ADR01_0033_E11.b : gaaaaaaggggaacccccgcccacttttctgtggggggccacatctgaggcaattttgag
CLNT1_0147_D05.b : gggaactccggcacttttctgtggggccccctcggggtgatcccacacctttgttttcgc
20110601C-010022 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVR01_0015_B11.b :
LVRM1_0080_E12.b :
ADR01_0033_E11.b : cacccttggtgtcccccaggttt
CLNT1_0147_D05.b : gcgttttccggcagaaaaaagatcgaccccggcctctcacccaatagttttattattacc
20110601C-010022 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVR01_0015_B11.b :
LVRM1_0080_E12.b :
ADR01_0033_E11.b :
CLNT1_0147_D05.b : ctagtttgaagagtgcccccgggaagaacacataaaaggggctcagggggccgcggtgtt
20110601C-010022 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVR01_0015_B11.b :
LVRM1_0080_E12.b :
ADR01_0033_E11.b :
CLNT1_0147_D05.b : gtaaccaccataaaagggtccgcccccctgcacc