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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-010098

Length: 919

Sequence:  [FASTA format sequence]
GGTGCGCAGC AGCGTCATGG CGCGCTTCTT CCGCGCGGGC CCGGGCTTAC CCTTCCGAGA
GGTGCTCTCG CGGGCAGTGT GGGGTCGTGC CGACAATGGC GGCCTCAGCC CGAAGGTCGG
AACCGGAGAC GCAGGGTCCC TTACAAAGCG TGAGCCGTTC CTCTCCAAGA GTGAGTGGCA
AAAGAAGCTG ACTCCAGAGC AATTCCACGT CACGAGAGAA AAAGGGACAG AACCGCCTTT
CAGTGGGACC TACCTGAATA ACAAGGAAGC AGGAATGTAT CACTGTGTGT GCTGTGACAG
CCCACTCTTC AGCTCTGAGA AAAAGTACTG CTCTGGCACT GGATGGCCTT CATTTTCTGA
GGCTCACGGC ACATCTGGCT CTGATGAGAG TGACACAGGG ATCCTGAGAC GTGTGGACAC
CTCGCTGGGA ACAGCTCGCA CGGAGGTTGT CTGCAAGCAG TGCGAAGCTC ACCTTGGCCA
TGTGTTTCCT GATGGACCTG GGCCTACAGG TCAGAGGTTT TGCATCAACA GTGTGGCACT
CAAGTTCAAA CCAAGGAAAC ACTGACCATC GCCAGGAGTC CCTTTCTCTT CCACCCTCTC
ATTTCCAAAC TCGATTTTCA TAATTTATGC AAATGACTAG TTTTATTAAT GACCAAACTA
GGCTAAGCTT GCTGGCATAC CTTCTCTAAT TCATTACCTG GAGTCAGCTC CACCCTGGCT
CTGGCTCTGA CTAGAATTTC ACGGAATGAC AGAGGGGCAG TCCTTTCCCT TAAATCAACA
TCTGTGGGCT TTGCCAGGAC CAGAGGGCAT GACTCTTTGG GGACATTAGG AGGCTGATGG
ATAAGCCAAA GAACTCCTAT AAAACTATGC TGAATTTTCA TTGCAGTCAA GTGTTTCACA
GACATGTATA GGTGAGAGG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		MSRB2	methionine-R-sulfoxide reductase B2, mitochondrial precursor [Homo sapiens].	299	3e-81	O
		MSRB3	methionine-R-sulfoxide reductase B3 isoform 1 [Homo sapiens].	144	9e-35	O
		MSRB3	methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].	142	3e-34	O
		MSRB3	methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].	142	3e-34	O
		MSRB3	methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].	142	3e-34	O
		SEPX1	methionine-R-sulfoxide reductase B1 [Homo sapiens].	60.1	3e-09	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Msrb2	methionine-R-sulfoxide reductase B2, mitochondrial precursor [Mus musculus].	273	1e-73	O
		Msrb3	methionine-R-sulfoxide reductase B3, mitochondrial precursor [Mus musculus].	141	6e-34	O
		Sepx1	methionine-R-sulfoxide reductase B1 [Mus musculus].	53.5	2e-07	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC608357	PREDICTED: similar to Methionine-R-sulfoxide reductase B [Canis familiaris].	282	4e-76	O
		LOC608386	PREDICTED: similar to methionine-R-sulfoxide reductase B3 [Canis familiaris].	141	1e-33
		SEPX1	selenoprotein X, 1 [Canis lupus familiaris].	59.7	4e-09	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		MSRB2	PREDICTED: methionine sulfoxide reductase B2-like [Bos taurus].	313	2e-85	O
		MSRB2	methionine-R-sulfoxide reductase B2, mitochondrial [Bos taurus].	313	2e-85	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3-like isoform 4 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3-like isoform 3 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3-like isoform 2 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3-like isoform 1 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3 isoform 3 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3 isoform 2 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3 isoform 4 [Bos taurus].	142	5e-34	O
		MSRB3	PREDICTED: methionine sulfoxide reductase B3 isoform 1 [Bos taurus].	142	5e-34	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100520263	PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like [Sus scrofa].	389	e-108	O
		LOC100624041	PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like [Sus scrofa].	306	8e-84
		LOC100511693	PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like [Sus scrofa].	73.2	2e-13	O
		SEPX1	methionine-R-sulfoxide reductase B1 [Sus scrofa].	56.6	2e-08	O

Alignment:      TOP

20110601C-010098 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
HTMT1_0046_H11.b :                      tttttggacggtagaggccgtaxxxxxxxxxxxxxxxxx
TCH01_0043_A11.b :        tttttggctagtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0027_F12.b : ggggcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-010098 : .....................GGTGCGCAGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
                   ---------+---------+---------+---------+---------+---------+ 39
HTMT1_0046_H11.b : xxxxxxxxxxxxxxxxxxxxxGGTGCGCAGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
TCH01_0043_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
OVR01_0027_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG


20110601C-010098 : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
                   ---------+---------+---------+---------+---------+---------+ 99
HTMT1_0046_H11.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
TCH01_0043_A11.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
OVR01_0027_F12.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG


20110601C-010098 : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
                   ---------+---------+---------+---------+---------+---------+ 159
HTMT1_0046_H11.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
TCH01_0043_A11.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
OVR01_0027_F12.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT


20110601C-010098 : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA
                   ---------+---------+---------+---------+---------+---------+ 219
HTMT1_0046_H11.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA
TCH01_0043_A11.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA
OVR01_0027_F12.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCGATTCCACGTCACGAGAGA


20110601C-010098 : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
                   ---------+---------+---------+---------+---------+---------+ 279
HTMT1_0046_H11.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
TCH01_0043_A11.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
OVR01_0027_F12.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA


20110601C-010098 : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
                   ---------+---------+---------+---------+---------+---------+ 339
HTMT1_0046_H11.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
TCH01_0043_A11.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
OVR01_0027_F12.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC


20110601C-010098 : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
                   ---------+---------+---------+---------+---------+---------+ 399
HTMT1_0046_H11.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
TCH01_0043_A11.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
OVR01_0027_F12.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG


20110601C-010098 : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
                   ---------+---------+---------+---------+---------+---------+ 459
HTMT1_0046_H11.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
TCH01_0043_A11.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
OVR01_0027_F12.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA


20110601C-010098 : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
                   ---------+---------+---------+---------+---------+---------+ 519
HTMT1_0046_H11.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
TCH01_0043_A11.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
OVR01_0027_F12.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT


20110601C-010098 : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
                   ---------+---------+---------+---------+---------+---------+ 579
HTMT1_0046_H11.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
TCH01_0043_A11.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
OVR01_0027_F12.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT


20110601C-010098 : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
                   ---------+---------+---------+---------+---------+---------+ 639
HTMT1_0046_H11.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
TCH01_0043_A11.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
OVR01_0027_F12.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA


20110601C-010098 : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
                   ---------+---------+---------+---------+---------+---------+ 699
HTMT1_0046_H11.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
TCH01_0043_A11.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
OVR01_0027_F12.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT


20110601C-010098 : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA
                   ---------+---------+---------+---------+---------+---------+ 759
HTMT1_0046_H11.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA
TCH01_0043_A11.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGGCTAGAATTTCACGGAATGACAGAGGGGCA
OVR01_0027_F12.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA


20110601C-010098 : GTCCTTTCCCTTAAATCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTCT*
                   ---------+---------+---------+---------+---------+---------+ 816
HTMT1_0046_H11.b : GTCCTTTCCCTTAAATCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTCT*
TCH01_0043_A11.b : GTCCTTTCCCTTAA*TCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTCT*
OVR01_0027_F12.b : GTCCTTTCCCTTAAATCAACATCTGTGGGCTTTTGCCCAGGACCAGAGGGCATGACTCTT


20110601C-010098 : TTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
                   ---------+---------+---------+---------+---------+---------+ 876
HTMT1_0046_H11.b : TTGGGGACATTTAGGAGCTGATGGATNAGCCAAAGAACTCCTATAAAACTATGCTGAATT
TCH01_0043_A11.b : TTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
OVR01_0027_F12.b : TTGGGGACATTANGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT


20110601C-010098 : TTC*ATTGCAGTCAAGTGTTTCACAGACATGTATAGGTGAGAGG................
                   ---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : TTC*ATTGCAGTCAAGTGTTTCACAGACATGTATAGGTGAGAGGgtcaacgagaagagga
TCH01_0043_A11.b : TTCcattgcagtcaagtggttcacagacatgtataggtgagagggtcaacgagaagaggg
OVR01_0027_F12.b : TTCCATTGCAgtcaagtgtttcacaaacttgtataggtgagaaggtcaaacgaaaagagg


20110601C-010098 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : atggaaatacggggatgaggatgatccaccagtccagtgtggaaaaaggcaataagaggc
TCH01_0043_A11.b : atgaaaatacgggatgaggatgatccaccgtcccagtgtggaaaagcaataaggaggcag
OVR01_0027_F12.b : aatgaaaatacgggatgaagattatccacagtcccagtggtgaaaaaggcaattaaggag


20110601C-010098 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : aggttgtggacaancgcnttttgggaaggcacttgtggggaatcacgggatgcaggaaaa
TCH01_0043_A11.b : gtttgtggaccacctgcttttgggaaggccatggtggggatcccggggaagcaggaaatt
OVR01_0027_F12.b : ggagggtttggggaccaaacttgcgttttgggggagggcccattgtggggggatcccccg


20110601C-010098 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : ttttccacaaaccttaaactggcttggaaattttaattcaaaccttcttactggcactaa
TCH01_0043_A11.b : tttccaaaacctttaacggtcttaaaattcaattccacctctctaccgcaactattttaa
OVR01_0027_F12.b : gggaaatgccggggaaaattttttttccccaaaaac                       


20110601C-010098 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : ttttcaggggggtttggtaacttttgggaaaagaaacacagggggccacaaattaacttt
TCH01_0043_A11.b : ggggcgttgtaaaccttaggaaaagaaaacaagggctcaaaagttacctttaaaggtcaa
OVR01_0027_F12.b :                                                             


20110601C-010098 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : taagggttcaaaaaaaattaattttggggnnnnnnngnnnnngaggaaagagaaaaaaca
TCH01_0043_A11.b : taaa                                                       
OVR01_0027_F12.b :                                                             


20110601C-010098 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 919
HTMT1_0046_H11.b : aacaagcca                                                  
TCH01_0043_A11.b :                                                             
OVR01_0027_F12.b :