[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-012389
Length:
1,069
Sequence:
[FASTA format sequence]
TTCTGAGGAG ATAGTTTTTC GAGAACTTTC TCCGGCAGGG GCTGTGAGAT GCTTGGTGGA
GAGCTGCCCT CGCTTTTGGC CCCAGCTCGC GTCCTCTAGG AGTCGCTCTT GCGGCCTTTC
TGAGGCGCCC GGAGACCTTC CGCCCCTCGG AGGCCGGCGC GGTGGTCTCT CTCCCGCCCC
GGAAGGAAAC CGGCGCGCCT CTCCCTGTTG GAAGGCTTCT AGCACCAGGA TGAGTCTGCA
GTGGACTGCA GTTGCCACCT TCCTCTATGC GGAGGTCTTC GCTGTGCTGC TTCTCTGCAT
TCCCTTCATT TCTCCCAAAA GATGGCAGAA GATTTTCAAG TCCCGCCTTG TGGAGTTGGT
AGTGACCTAT GGCAACACCT TCTTTGTGGT TCTCATCGTC ATCCTCGTGC TGCTGGTCAT
TGATGCTCTT CGGGAGATTC GCAAGTACGA CGATGTGACC GAGAAGGTGA ACCTGCAGAA
CAATCCCGGG GCTGTGGAGC ATTTCCACAT GAAGCTCTTC CGGGCCCAGA GGAACCTCTA
CATCGCCGGC TTCTCCTTGC TGCTGTCCTT CCTGCTTAGA CGCCTGGTAA CTCTCATCTC
CCAGCAGGCC ACGCTGCTGG CCTCCAATGA AGCCTTTAAA AAGCAGGCAG AGAGCGCTAG
TGAAGCAGCC AAGAAGTACA TGGAAGAGAA CGACCAGCTG AAGAAGGAAG CTGCTGTGGG
CGGAGTCAAG TTAGATGGCG GCGACGCAGG AGGGAAGGTG GAGGAAGAGA ACAGGAGCCT
GAAGGCTGAG CTGAAGAGGC TGAAGGAAGA GCTGGCCGTC AGCAAGCAGA AGCTGGAGAA
GGCTGAAAAC GAGGCTCTGG CCATGCGGAA GCAGTCGGAG GGCCTCCCAA GGAGTACGAC
CGCCTGTTTG GAGACAAANC AAGCTGCAGG CGGGCGTAGA TGGCCCCACN NGACAGNAGG
GAGGATGAGG CCCCTGTTCC NTGCCGGTGN CTGGCTGCTT CGCGAGAGCC AAGCTCCCNT
CGCACTTCGG CTCGCTCCCC TCGCTGCTGT TTCCCGCGCT GCTTGCAGT
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | BCAP31 | B-cell receptor-associated protein 31 isoform a [Homo sapiens]. | 258 | 5e-69 | O |
![]() |
![]() | BCAP31 | B-cell receptor-associated protein 31 isoform b [Homo sapiens]. | 243 | 2e-64 | O |
![]() |
![]() | BCAP31 | B-cell receptor-associated protein 31 isoform b [Homo sapiens]. | 243 | 2e-64 | O |
![]() |
![]() | BCAP29 | B-cell receptor-associated protein 29 isoform a [Homo sapiens]. | 119 | 5e-27 | O |
![]() |
![]() | BCAP29 | B-cell receptor-associated protein 29 isoform b [Homo sapiens]. | 119 | 5e-27 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | Bcap31 | B-cell receptor-associated protein 31 [Mus musculus]. | 235 | 5e-62 | O |
![]() |
![]() | Bcap29 | B-cell receptor-associated protein 29 [Mus musculus]. | 113 | 3e-25 | O |
![]() |
![]() | Bcap29 | B-cell receptor-associated protein 29 [Mus musculus]. | 113 | 3e-25 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC481080 | PREDICTED: similar to B-cell receptor-associated protein 31 (BCR-associated protein Bap31) (p28 Bap31) (CDM protein) (6C6-AG tumor-associated antigen) (DXS1357E) [Canis familiaris]. | 253 | 3e-67 | O |
![]() |
![]() | LOC610588 | PREDICTED: similar to B-cell receptor-associated protein 31 [Canis familiaris]. | 134 | 2e-31 | O |
![]() |
![]() | LOC475884 | PREDICTED: similar to B-cell receptor-associated protein BAP29 isoform d [Canis familiaris]. | 121 | 1e-27 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | BCAP31 | B-cell receptor-associated protein 31 [Bos taurus]. | 247 | 1e-65 | O |
![]() |
![]() | BCAP29 | B-cell receptor-associated protein 29 [Bos taurus]. | 117 | 2e-26 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC100520774 | PREDICTED: b-cell receptor-associated protein 31-like [Sus scrofa]. | 259 | 2e-69 | O |
![]() |
![]() | LOC100622655 | PREDICTED: b-cell receptor-associated protein 29-like isoform 2 [Sus scrofa]. | 116 | 2e-26 | O |
![]() |
![]() | LOC100622655 | PREDICTED: b-cell receptor-associated protein 29-like isoform 1 [Sus scrofa]. | 116 | 2e-26 | O |
|
|
20110601C-012389 : .........................................TTCTGAGGAGATAGTTTTT
---------+---------+---------+---------+---------+---------+ 19
TES01_0022_H08.b : tttcgcgttggctctcctgtggTTCTGAGGAGATAGTTTTT
TES01_0079_A05.b : nnncactgcgttgctctggagttt
OVRT1_0049_F06.b : nnnggtttttnnngnnnccttttgcgttcgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRT1_0013_E01.b : nnnnnacgtctgctgtcgxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-012389 : CGAGAACTTTCTCCGGCAGGGGCTGTGAGATGCTTGGTGGAGAGCTGCCCTCGCTTTTGG
---------+---------+---------+---------+---------+---------+ 79
TES01_0022_H08.b : CGAGAACTTTCTCCGGCAGGGGCTGTGAGATGCTTGGTGGAGAGCTGCCCTCGCTTTTGG
TES01_0079_A05.b : ttcagACTTTCTCCGGCAGGGGCTGTGAGATGCTTGGTGGAGAGCTGCCCTCGCTTTTGG
OVRT1_0049_F06.b : xxxxxxxxxxxxxxxxxxxxxxxxGTGAGATGCTTGGTGGAGAGCTGCCCTCGCTTTTGG
OVRT1_0013_E01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGAGATGCTTGGTGGAGAGCTGCCCTCGCTTTTGG
20110601C-012389 : CCCCAGCTCGCGTCCTCTAGGAGTCGCTCTTGCGGCCTTTCTGAGGCGCCCGGAGACCTT
---------+---------+---------+---------+---------+---------+ 139
TES01_0022_H08.b : CCCCAGCTCGCGTCCTCTAGGAGTCGCTCTTGCGGCCTTTCTGAGGCGCCCGGAGACCTT
TES01_0079_A05.b : CCCCAGCTCGCGTCCTCTAGGAGTCGCTCTTGCGGCCTTTCTGAGGCGCCCGGAGACCTT
OVRT1_0049_F06.b : CCCCGGCTCGCGTCCTCTAGGAGTCGCTCTTGCGGCCTTTCTGAGGCGCCCGGAGACCTT
OVRT1_0013_E01.b : CCCCAGCTCGCGTCCTCTAGGAGTCGCTCTTGCGGCCTTTCTGAGGCGCCCGGAGACCTT
20110601C-012389 : CCGCCCCTCGGAGGCCGGCGCGGTGGTCTCTCTCCCGCCCCGGAAGGAAACCGGCGCGCC
---------+---------+---------+---------+---------+---------+ 199
TES01_0022_H08.b : CCGCCCCTCGGAGGCCGGCGCGGTGGTCTCTCTCCCGCCCCGGAAGGAAACCGGCGCGCC
TES01_0079_A05.b : CCGCCCCTCGGAGGCCGGCGCGGTGGTCTCTCTCCCGCCCCGGAAGGAAACCGGCGCGCC
OVRT1_0049_F06.b : CCGCCCCTCGGAGGCCGGCGCGGTGGTCTCTCTCCCGCCCCGGAAGGAAACCGGCGCGCC
OVRT1_0013_E01.b : CCGCCCCTCGGAGGCCGGCGCGGTGGTCTCTCTCCCGCCCCGGAAGGAAACCGGCGCGCC
20110601C-012389 : TCTCCCTGTTGGAAGGCTTCTAGCACCAGGATGAGTCTGCAGTGGACTGCAGTTGCCACC
---------+---------+---------+---------+---------+---------+ 259
TES01_0022_H08.b : TCTCCCTGTTGGAAGGCTTCTAGCACCAGGATGAGTCTGCAGTGGACTGCAGTTGCCACC
TES01_0079_A05.b : TCTCCCTGTTGGAAGGCTTCTAGCACCAGGATGAGTCTGCAGTGGACTGCAGTTGCCACC
OVRT1_0049_F06.b : TCTCCCTGTTGGAAGGCTTCTAGCACCAGGATGAGTCTGCAGTGGACTGCAGTTGCCACC
OVRT1_0013_E01.b : TCTCCCTGTTGGAAGGCTTCTAGCACCAGGATGAGTCTGCAGTGGACTGCAGTTGCCACC
20110601C-012389 : TTCCTCTATGCGGAGGTCTTCGCTGTGCTGCTTCTCTGCATTCCCTTCATTTCTCCCAAA
---------+---------+---------+---------+---------+---------+ 319
TES01_0022_H08.b : TTCCTCTATGCGGAGGTCTTCGCTGTGCTGCTTCTCTGCATTCCCTTCATTTCTCCCAAA
TES01_0079_A05.b : TTCCTCTATGCGGAGGTCTTCGCTGTGCTGCTTCTCTGCATTCCCTTCATTTCTCCCAAA
OVRT1_0049_F06.b : TTCCTCTATGCGGAGGTCTTCGCTGTGCTGCTTCTCTGCATTCCCTTCATTTCTCCCAAA
OVRT1_0013_E01.b : TTCCTCTATGCGGAGGTCTTCGCTGTGCTGCTTCTCTGCATTCCCTTCATTTCTCCCAAA
20110601C-012389 : AGATGGCAGAAGATTTTCAAGTCCCGCCTTGTGGAGTTGGTAGTGACCTATGGCAACACC
---------+---------+---------+---------+---------+---------+ 379
TES01_0022_H08.b : AGATGGCAGAAGATTTTCAAGTCCCGCCTTGTGGAGTTGGTAGTGACCTATGGCAACACC
TES01_0079_A05.b : AGATGGCAGAAGATTTTCAAGTCCCGCCTTGTGGAGTTGGTAGTGACCTATGGCAACACC
OVRT1_0049_F06.b : AGATGGCAGAAGATTTTCAAGTCCCGCCTTGTGGAGTTGGTAGTGACCTATGGCAACACC
OVRT1_0013_E01.b : AGATGGCAGAAGATTTTCAAGTCCCGCCTTGTGGAGTTGGTAGTGACCTATGGCAACACC
20110601C-012389 : TTCTTTGTGGTTCTCATCGTCATCCTCGTGCTGCTGGTCATTGATGCTCTTCGGGAGATT
---------+---------+---------+---------+---------+---------+ 439
TES01_0022_H08.b : TTCTTTGTGGTTCTCATCGTCATCCTCGTGCTGTTGGTCATTGATGCTCTTCGGGAGATT
TES01_0079_A05.b : TTCTTTGTGGTTCTCATCGTCATCCTCGTGCTGTTGGTCATTGATGCTCTTCGGGAGATT
OVRT1_0049_F06.b : TTCTTTGTGGTTCTCATCGTCATCCTCGTGCTGCTGGTCATTGATGCTCTTCGGGAGATT
OVRT1_0013_E01.b : TTCTTTGTGGTTCTCATCGTCATCCTCGTGCTGCTGGTCATTGATGCTCTTCGGGAGATT
20110601C-012389 : CGCAAGTACGACGATGTGACCGAGAAGGTGAACCTGCAGAACAATCCCGGGGCTGTGGAG
---------+---------+---------+---------+---------+---------+ 499
TES01_0022_H08.b : CGCAAGTACGACGATGTGACCGAGAAGGTGAACCTGCAGAACAATCCCGGGGCTGTGGAG
TES01_0079_A05.b : CGCAAGTACGACGATGTGACCGAGAAGGTGAACCTGCAGAACAATCCCGGGGCTGTGGAG
OVRT1_0049_F06.b : CGCAAGTACGACGATGTGACCGAGAAGGTGAACCTGCAGAACAATCCCGGGGCTGTGGAG
OVRT1_0013_E01.b : CGCAAGTACGACGATGTGACCGAGAAGGTGAACCTGCAGAACAATCCCGGGGCTGTGGAG
20110601C-012389 : CATTTCCACATGAAGCTCTTCCGGGCCCAGAGGAACCTCTACATCGCCGGCTTCTCCTTG
---------+---------+---------+---------+---------+---------+ 559
TES01_0022_H08.b : CATTTCCACATGAAGCTCTTCCGGGCCCAGAGGAACCTCTACATCGCCGGCTTCTCCTTG
TES01_0079_A05.b : CATTTCCACATGAAGCTCTTCCGGGCCCAGAGGAACCTCTACATCGCCGGCTTCTCCTTG
OVRT1_0049_F06.b : CATTTCCACATGAAGCTCTTCCGGGCCCAGAGGAACCTCTACATCGCCGGCTTCTCCTTG
OVRT1_0013_E01.b : CATTTCCACATGAAGCTCTTCCGGGCCCAGAGGAACCTCTACATCGCCGGCTTCTCCTTG
20110601C-012389 : CTGCTGTCCTTCCTGCTTAGACGCCTGGTAACTCTCATCTCCCAGCAGGCCACGCTGCTG
---------+---------+---------+---------+---------+---------+ 619
TES01_0022_H08.b : CTGCTGTCCTTCCTGCTTAGACGCCTGGTAACTCTCATCTCCCAGCAGGCCACGCTGCTG
TES01_0079_A05.b : CTGCTGTCCTTCCTGCTTAGACGCCTGGTAACTCTCATCTCCCAGCAGGCCACGCTGCTG
OVRT1_0049_F06.b : CTGCTGTCCTTCCTGCTTAGACGCCTGGTAACTCTCATCTCCCAGCAGGCCACGCTGCTG
OVRT1_0013_E01.b : CTGCTGTCCTTCCTGCTTAGACGCCTGGTAACTCTCATCTCCCAGCAGGCCACGCTGCTG
20110601C-012389 : GCCTCCAATGAAGCCTTTAAAAAGCAGGCAGAGAGCGCTAGTGAAGCAGCCAAGAAGTAC
---------+---------+---------+---------+---------+---------+ 679
TES01_0022_H08.b : GCCTCCAATGAAGCCTTTAAAAAGCAGGCAGAGAGCGCTAGTGAAGCAGCCAAGAAGTAC
TES01_0079_A05.b : GCCTCCCATGAAGCCTTT*AAAAGCAGGCAGAGAGCGCTAGTGAAGCAGCCAAGAAGTAC
OVRT1_0049_F06.b : GCCTCCAATGAAGCCTTTAAAAAGCAGGCAGAGAGCGCTAGTGAAGCAGCCAAGAAGTAC
OVRT1_0013_E01.b : GCCTCCAATGAAGCCTTTAAAAAGCAGGCAGAGAGCGCTAGTGAAGCAGCCAAGAAGTAC
20110601C-012389 : ATGGAAGAGAACGACCAGCTGAAGAAGGAAGCTGCTGTGGGCGG*AGTCAAGTTAGATGG
---------+---------+---------+---------+---------+---------+ 738
TES01_0022_H08.b : ATGGAAGAGAACGACCAGCTGAAGAAGGAAGCTGCTGTGGGCGG*AGTCAAGTTAGATGG
TES01_0079_A05.b : ATGGAAGAAGACGACCAGCTGAAGAAGGAAGCTGCTGTGGGGGGNATTCCAGTTAGATTG
OVRT1_0049_F06.b : ATGGAAGAGAACGACCAGCTGAAGAAGGAAGCTGCTGTGGGCGG*AGTCAAGTTAGATGG
OVRT1_0013_E01.b : ATGGAAGAGAACGACCAGCTGAAGAAGGAAGCTGCTGTGGGCGG*AGTCAAGTTAGATGG
20110601C-012389 : CGGCGACGCAGGA*GGGAAGGTGGAGGAAGAGAACAGGAGCCTGAAGGCTGAGCTGAAGA
---------+---------+---------+---------+---------+---------+ 797
TES01_0022_H08.b : CCGCGACGCAGGA*GGGAAGGTGGAGGAAAGAGACAGGAGCCTNGAGGCTGAGCTGAANA
TES01_0079_A05.b : CCGCGACCCANGAAGGGAAGGTGGAGGAAGAAAACCGGAGCCTGAAGGCTGAacttaaaa
OVRT1_0049_F06.b : CGGCGACGCANGA*GGGAAGGTGGAGGAAGAGAACAGGAGCCTGAAGGCTGAGCTGAAGA
OVRT1_0013_E01.b : CGGCGACGCAGGA*GGGAAGGTGGAGGAAGAGAACAGGAGCCTNGAGGCTGAGCTGAAGA
20110601C-012389 : GGCTGAAGGAAGAGCTGGCCGTCAGCAAGCAGAAGCTGGAGAAGGCTGAAAACGAGGCTC
---------+---------+---------+---------+---------+---------+ 857
TES01_0022_H08.b : GGCTGAAGGAAGAGCTGGCCGTCAGCAAGCAGAAGCTGGAGAAGGCTGAAAACGAGGCTC
TES01_0079_A05.b : ggctttaaggaaacctggccctcaccaaccaaaacctgggaaaaggttgaaaccaaggtc
OVRT1_0049_F06.b : GGCTGAAGGAAGAGCTGGCCGTCAGCAAGCAGAAGCTGGAGAAAGCTGAAAACGAGGCTC
OVRT1_0013_E01.b : GGCTGAAGGAAGAGCTGGCCGTCAGNCAGCAGAAGCTGGAGAAGGCTGAAAACGAGGCTC
20110601C-012389 : TGGCCATGCGGAAGCAGTCGGAGGGCCTCCCAAGGAGTACGACCGCCTGTTTGGAGACAA
---------+---------+---------+---------+---------+---------+ 917
TES01_0022_H08.b : TGGCCCTGCGGAAGCAGTCGGAGGGGCTCCCAAGGAGTACGACCGGCTGTTGGGAGGAca
TES01_0079_A05.b : ttggcctgcgaaaacattcggagggcccccccaaggataccaaccccctgttggaggaac
OVRT1_0049_F06.b : TGGCCATGCGGAAGCAGTCGGAGGCCCTCCCAAGGAGTACGACCGCCTGTTGGAGGAGCA
OVRT1_0013_E01.b : TGGCCATGCGGGAGCAGTCGGAGGGCCTCACCAGGAGTACGACCGCCCTGTTGGAGACAC
20110601C-012389 : ANCAAGCTGCAGGCGGGCGTAGATGGCCCCACNNGACAGNAGGGAGGATGAGGCCCCTGT
---------+---------+---------+---------+---------+---------+ 977
TES01_0022_H08.b : ccccaagctcccggcgccggtaaatgggccccccgaacaaaaaggaggagtgaggccccc
TES01_0079_A05.b : acccaaccttccgggggggcgttaatggccccccgccaaaaaagggggaggaggggcccc
OVRT1_0049_F06.b : acaaagctgcaaggcggcgttgatggcccccggacaaaaaggaagagtgagggccctgtt
OVRT1_0013_E01.b : ANCAAGCTGCAGGCGGGCGTAGATGGCCCCACNNGACAGNAGGGAGGATGAGGCCCCTGT
20110601C-012389 : TCCNTGCCGGTGNCTGGCTGCTTCGCGAGAGCCAAGCTCCCNTCGCACTTCGGCTCGCTC
---------+---------+---------+---------+---------+---------+ 1037
TES01_0022_H08.b : tggttcctgcccgtgggctggtgcttccccaaaaccccaacctccctcgggcctttgggt
TES01_0079_A05.b : ggttcctgcccctgggtggggggtttccaaagacccaaacccccctgggaatttgggggc
OVRT1_0049_F06.b : ccctgccggggctggctgcttccaagaaccacctccctcgactttggctggtcccctcgc
OVRT1_0013_E01.b : TCCNTGCCGGTGNCTGGCTGCTTCGCGAGAGCCAAGCTCCCNTCGCACTTCGGCTCGCTC
20110601C-012389 : CCCTCGCTGCTGTTTCCCGCGCTGCTTGCAGT............................
---------+---------+---------+---------+---------+---------+ 1069
TES01_0022_H08.b : tggctcccctcccgcgggtggtttcccccgccgtgctttgatttccccgcgcccccccca
TES01_0079_A05.b : tcccccccccggggttttcccccccgtgttgtgatttcccgccccccccctttttttggg
OVRT1_0049_F06.b : tggcgttccccgcctgttggcgttcaccccccccgcattcttaagggacagttccgtcca
OVRT1_0013_E01.b : CCCTCGCTGCTGTTTCCCGCGCTGCTTGCAGTccagcgcccccagcatctgtaggggacc
20110601C-012389 : ............................................................
---------+---------+---------+---------+---------+---------+ 1069
TES01_0022_H08.b : tttttgtaaggggaaccatttcccctccccgaatgaacaaggcttggctttcccctaaat
TES01_0079_A05.b : ggaccccttccccccccaaaaaaaaggggtttttttcccgggataggccccccttgttta
OVRT1_0049_F06.b : ggatagccggctgctttcccgggatgaccccttgggtcaggttgggttcccccccgggcc
OVRT1_0013_E01.b : aatttccctcagaatgaacggcttgctttcgcctgatggaccccttgggttacggtgggg
20110601C-012389 : ............................................................
---------+---------+---------+---------+---------+---------+ 1069
TES01_0022_H08.b : tgaacccccttttggtttaccggttgctggtttcgccccctcaaagggccccctttttct
TES01_0079_A05.b : tgtgttggttttcgccccccaaggcccctttcttgttttttgtggagggaataggaccga
OVRT1_0049_F06.b : cctttctggtcttgggaaggaatgggccggaaataattttccgggctaaggttttggtgg
OVRT1_0013_E01.b : ttcgccctccaggcccttttctggccctggggaggcaagggcccggaaaataagtttccg
20110601C-012389 : ............................................................
---------+---------+---------+---------+---------+---------+ 1069
TES01_0022_H08.b : ggttctctccgggaagggccaatgggccccgggaaaaattaa
TES01_0079_A05.b : aaaaaaaagttttctcggcccaaaaggtttttgtttttttaaaaaaaaaaaaaaaaaatt
OVRT1_0049_F06.b : ttcaaaaaaaaaaaagccctgtccatgtgggcgcgccctatattttaaaaaacccccccc
OVRT1_0013_E01.b : ggcaaagggtgttgggttggaaaaaaaaaaaaaaaaaaaannnnannnnnannnnnnnnn
20110601C-012389 : ............................................................
---------+---------+---------+---------+---------+---------+ 1069
TES01_0022_H08.b :
TES01_0079_A05.b : gtttttcgttgggcggcggctcttttttttaaaaaaccccccccccccccgccacaaaaa
OVRT1_0049_F06.b : cccgccaaacaaaagggcttgtgttttttttccccttgtggaaaaaaccccttcacaaat
OVRT1_0013_E01.b : nngggcgtgtgtccgtgggggggggaatatttaaaaacccccccccccaacaaaaaagaa
20110601C-012389 : ............................................................
---------+---------+---------+---------+---------+---------+ 1069
TES01_0022_H08.b :
TES01_0079_A05.b : aaaaaatggtggtttttttttccctataaaga
OVRT1_0049_F06.b : ttttcttttggttgccacgattttggggcgggggttattctctct
OVRT1_0013_E01.b : ttttttttttttttatttaaaaaaaaacaaaaaaattttcttgtttgtcggct