[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-012836
Length:
1,060
Sequence:
[FASTA format sequence]
CACATTGCAA ACCTCAGCTT GGCATGAAGA AAACAGAGCT CAGTGCACTC TTCCAGACCC
TGCTGAACAG ACTGCACCAG AGGGAAATTT CCAACTCGAG AGGTTGCTCC TCATCATTTG
TTCCCGCCAA GCTTTGGTGT GAAGACTGCT TTCCAGGCTA AGACATCTCC CACAATGTTC
CTATTGCAAG GTGCCCAGAT GCTGCAGATG CTGGAGAATT CCTTGAGGAA GAGCCTTCCT
ACATCCTTGA AGGTTTATGG CACCGTCTTC CACATGAACC AGGGAAACCC CTTCAAGCTA
AAGGCCTTGG TGGACAAGTG GCCTGATTTT AACACAGTGG TTATTCGCCC TCAAGAGCAG
GAGATGACAG ACGACCTTGA TCACTACACC AATACCTACC ACATCTACTC CAAGGACCTG
AAGAACTGTG AGGAATTCCT TGGCTTACCA GAAGTCATCA ACTGGAAACA GCATTTGCAG
ATCCAAAGTT CTCAGTCCAG CCTGAATGAG GTAATACAAA AGCTTGCAGC CACTAAATCC
TTCAACGTCC AGCAGACAGA AAACATTCTC TACATGACGC TTGAGACAAT AAAGGAACTG
GCTCCTTCCC TGCTGGATGA AAAGAACTTG TCCCTTACCG ATGTGACCAA GAGCAGTTTC
AACTCTCATC CCTGGAACCT TCCCACGCTG CCTTGGTGAA TCAATTATGG CAATTCGGTG
GCAATGAGAG GAGCCAGAGA TTCATCGAGC GCTGCATCCG GAACTTCCCC TCCGTCTGCC
TGCTAGGGCC TGAGGGGACC CCGATAGCTT GGTCCCTGAT GGACCAGACA GGAGAGATGC
GGATGGCAGG CACCAAACTT GAGTACCGGG CCCAGGGCCT CGTCACCTAC GTCATCTTTT
CCCATTCCCA GTTCTGACCA AACTCGGTTT CCCCTCCTAT TCTCACGTAG ACAAGAAAAA
CAAAATTATG CAGAAGATGA GTCACACTCT GAATCACCTT CGCATGCCCT GTAGCTGGAA
TCAGTGGAAC TGTGTGCCTC TGTGAAGCAG CCCTGAACCC
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
GLYAT | glycine N-acyltransferase isoform a [Homo sapiens]. | 220 | 1e-57 | O | ||
GLYAT | glycine N-acyltransferase isoform b [Homo sapiens]. | 219 | 3e-57 | O | ||
GLYATL2 | glycine N-acyltransferase-like protein 2 [Homo sapiens]. | 128 | 1e-50 | O | ||
GLYATL1 | glycine N-acyltransferase-like protein 1 isoform 2 [Homo sapiens]. | 127 | 7e-49 | O | ||
GLYATL1 | glycine N-acyltransferase-like protein 1 isoform 2 [Homo sapiens]. | 127 | 7e-49 | O | ||
GLYATL1 | glycine N-acyltransferase-like protein 1 isoform 1 [Homo sapiens]. | 111 | 4e-44 | O | ||
GLYATL3 | glycine N-acyltransferase-like protein 3 [Homo sapiens]. | 99.4 | 9e-33 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
Glyat | glycine N-acyltransferase [Mus musculus]. | 209 | 4e-54 | O | ||
Keg1 | glycine N-acyltransferase-like protein Keg1 [Mus musculus]. | 202 | 7e-95 | O | ||
Gm4952 | glycine N-acyltransferase-like protein [Mus musculus]. | 201 | e-100 | O | ||
Gm4952 | glycine N-acyltransferase-like protein [Mus musculus]. | 201 | e-100 | O | ||
Glyatl3 | glycine N-acyltransferase-like protein 3 [Mus musculus]. | 97.1 | 2e-20 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC483463 | PREDICTED: similar to glycine-N-acyltransferase isoform a [Canis familiaris]. | 226 | 4e-59 | O | ||
LOC483462 | PREDICTED: similar to glycine-N-acyltransferase (predicted) [Canis familiaris]. | 206 | 2e-53 | O | ||
LOC610094 | PREDICTED: similar to glycine-N-acyltransferase (predicted) [Canis familiaris]. | 88.6 | 9e-18 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
GLYAT | glycine N-acyltransferase [Bos taurus]. | 241 | e-116 | O | ||
LOC518623 | hypothetical protein LOC518623 [Bos taurus]. | 216 | e-101 | O | ||
GAT | glycine N-phenylacetyltransferase [Bos taurus]. | 205 | 6e-53 | O | ||
GLYATL2 | PREDICTED: glycine-N-acyltransferase-like 2-like [Bos taurus]. | 143 | 3e-53 | O | ||
GLYATL2 | glycine N-acyltransferase-like protein 2 [Bos taurus]. | 143 | 3e-53 | O | ||
GLYATL3 | glycine N-acyltransferase-like protein 3 [Bos taurus]. | 95.1 | 4e-32 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC100517514 | PREDICTED: glycine N-acyltransferase-like isoform 2 [Sus scrofa]. | 288 | 4e-78 | O | ||
LOC100517514 | PREDICTED: glycine N-acyltransferase-like isoform 1 [Sus scrofa]. | 288 | 4e-78 | O | ||
LOC100517803 | PREDICTED: glycine N-phenylacetyltransferase-like isoform 1 [Sus scrofa]. | 193 | 2e-98 | O | ||
LOC100518644 | PREDICTED: glycine N-acyltransferase-like [Sus scrofa]. | 137 | 3e-71 | O | ||
LOC100525206 | PREDICTED: glycine N-acyltransferase-like protein 2-like [Sus scrofa]. | 133 | 3e-54 | O | ||
LOC100516087 | PREDICTED: glycine N-acyltransferase-like protein 3-like [Sus scrofa]. | 97.4 | 1e-33 | O |
|
|
20110601C-012836 : .........................................................CAC
---------+---------+---------+---------+---------+---------+ 3
LVRM1_0204_B07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAC
LVRM1_0115_E01.b : naatgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxac
KDN01_0011_E10.b :
KDN01_0003_F08.b :
20110601C-012836 : ATTGCAAACCTCAGCTTGGCATGAAGAAAACAGAGCTCAGTGCACTCTTCCAGACCCTGC
---------+---------+---------+---------+---------+---------+ 63
LVRM1_0204_B07.b : ATTGCAAACCTCAGCTTGGCATGAAGAAAACAGAGCTCAGTGCACTCTTCCAGACCCTGC
LVRM1_0115_E01.b : attgcaAACCTCAGCTTGGCATGAAGAAGACAGAGCTCAGTGCACTCTTCCAGACCCTGC
KDN01_0011_E10.b : ncctctctnnnnnnncctgcgttggctgctggaaCCTGC
KDN01_0003_F08.b : nngggatttannnnnnnnccatacgtgtgcgtcgtgaaCCTG
20110601C-012836 : TGAACAGACTGCACCAGAGGGAAATTTCCAACTCGAGAGGTTGCTCCTCATCATTTGTTC
---------+---------+---------+---------+---------+---------+ 123
LVRM1_0204_B07.b : TGAACAGACTGCACCAGAGGGAAATTTCCAACTCGAGAGGTTGCTCCTCATCATTTGTTC
LVRM1_0115_E01.b : TGAACAGACTGCACCAGAGGGAAATTTCCAACTCGAGAGGTTGCTCCTCATCATTTGTTC
KDN01_0011_E10.b : TGA*CAGACTGCACCAGAGGGAAATTTCCGACTCGAGAGGTTGCTCCTCATCATTTGTTC
KDN01_0003_F08.b : CTAACAGACTGCACCATAGGGAAATTTCCGACTCGAGAGGTTGCTCCTCATCATTTGTTC
20110601C-012836 : CCGCCAAGCTTTGGTGTGAAGACTGCTTTCCAGGCTAAGACATCTCCCACAATGTTCCTA
---------+---------+---------+---------+---------+---------+ 183
LVRM1_0204_B07.b : CCGCCAAGCTTTGGTGTGAAGACTGCTTTCCAGGCTAAGACATCTCCCACAATGTTCCTA
LVRM1_0115_E01.b : CCGCCAGGCTTTGGTGTGAAGACTGCTTTCCAGGCTAAGACATCTCCCACAATGTTCCTA
KDN01_0011_E10.b : CCGCCAAGCTTTGGTGTGAAGACTGCTTTCTAGGCTAAGACATCTCCCACGATGTTCCTA
KDN01_0003_F08.b : CCGCCAAGCTTTGGTGTGAAGACTGCTTTCTAGGCTAAGACATCTCCCACGATGTTCCTA
20110601C-012836 : TTGCAAGGTGCCCAGATGCTGCAGATGCTGGAGAATTCCTTGAGGAAGAGCCTTCCTACA
---------+---------+---------+---------+---------+---------+ 243
LVRM1_0204_B07.b : TTGCAAGGTGCCCAGATGCTGCAGATGCTGGAGAATTCCTTGAGGAAGAGCCTTCCTACA
LVRM1_0115_E01.b : TTGCAAGGTGCCCAGATGCTGCAGATGCTGGAGAATTCCTTGAGGAAGAGCCTTCCTACA
KDN01_0011_E10.b : TTGCAAGGTGCCCAGATGCTGCAGATGCTGGAGAATTCCTTGAGGAAGAGCCTTCCTACA
KDN01_0003_F08.b : TTGCAAGGTGCCCAGATGCTGCAGATGCTGGAGAATTCCTTGAGGAAGAGCCTTCCTACA
20110601C-012836 : TCCTTGAAGGTTTATGGCACCGTCTTCCACATGAACCAGGGAAACCCCTTCAAGCTAAAG
---------+---------+---------+---------+---------+---------+ 303
LVRM1_0204_B07.b : TCCTTGAAGGTTTATGGCACCGTCTTCCACATGAACCAGGGAAACCCCTTCAAGCTAAAG
LVRM1_0115_E01.b : TCCTTGAAGGTTTATGGCACCGTCTTCCACATGAACCAGGGAAACCCCTTCAAGCTAAAG
KDN01_0011_E10.b : TCCTTGAAGGTTTATGGCACCGTCTTCCACATGAACCAGGGAAACCCCTTCAAGCTAAAG
KDN01_0003_F08.b : TCCTTGAAGGTTTATGGCACCGTCTTCCACATGAACCAGGGAAACCCCTTCAAGCTAAAG
20110601C-012836 : GCCTTGGTGGACAAGTGGCCTGATTTTAACACAGTGGTTATTCGCCCTCAAGAGCAGGAG
---------+---------+---------+---------+---------+---------+ 363
LVRM1_0204_B07.b : GCCTTGGTGGACAAGTGGCCTGATTTTAACACAGTGGTTATTCGCCCTCAGGAGCAGGAG
LVRM1_0115_E01.b : GCCTTGGTGGACAAGTGGCCTGATTTTAACACAGTGGTTATTCGCCCTCAGGAGCAGGAG
KDN01_0011_E10.b : GCCTTGGTGGACAAGTGGCCTGATTTTAACACAGTGGTTATTCGCCCTCAAGAGCAGGAG
KDN01_0003_F08.b : GCCTTGGTGGACAAGTGGCCTGATTTTAACACAGTGGTTATTCGCCCTCAAGAGCAGGAG
20110601C-012836 : ATGACAGACGACCTTGATCACTACACCAATACCTACCACATCTACTCCAAGGACCTGAAG
---------+---------+---------+---------+---------+---------+ 423
LVRM1_0204_B07.b : ATGACAGACGACCTTGATCACTACACCAATACCTACCACATCTACTCCAAGGACCTGAAG
LVRM1_0115_E01.b : ATGACAGACGACCTTGATCACTACACCAATACCTACCACATCTACTCCAAGGACCTGAAG
KDN01_0011_E10.b : ATGACAGACGACCTTGATCACTACACCAATACCTACCACATCTACTCCAAGGACCTGAAG
KDN01_0003_F08.b : ATGACAGACGACCTTGATCACTACACCAATACCTACCACATCTACTCCAAGGACCTGAAG
20110601C-012836 : AACTGTGAGGAATTCCTTGGCTTACCAGAAGTCATCAACTGGAAACAGCATTTGCAGATC
---------+---------+---------+---------+---------+---------+ 483
LVRM1_0204_B07.b : AACTGTGAGGAATTCCTTGGCTTACCAGAAGTCATCAACTGGAAACAGCATTTGCAGATC
LVRM1_0115_E01.b : AACTGTGAGGAATTCCTTGGCTTACCAGAAGTCATCAACTGGAAACAGCATTTGCAGATC
KDN01_0011_E10.b : AACTGTGAGGAATTCCTTGGCTTACCAGAAGTCATCAACTGGAAACAGCATTTGCAGATC
KDN01_0003_F08.b : AACTGTGAGGAATTCCTTGGCTTACCAGAAGTCATCAACTGGAAACAGCATTTGCAGATC
20110601C-012836 : CAAAGTTCTCAGTCCAGCCTGAATGAGGTAATACAAAAGCTTGCAGCCACTAAATCCTTC
---------+---------+---------+---------+---------+---------+ 543
LVRM1_0204_B07.b : CAAAGTTCTCAGTCCAGCCTGAATGAGGTAATACAAAAGCTTGCAGCCACTAAATCCTTC
LVRM1_0115_E01.b : CAAAGTTCTCAGTCCAGCCTGAATGAGGTAATACAAAAGCTTGCAGCCACTAAATCCTTC
KDN01_0011_E10.b : CAAAGTTCTCAGTCCAGCCTGAATGAGGTAATACAAAAGCTTGCAGCCACTAAATCCTTC
KDN01_0003_F08.b : CAAAGTTCTCAGTCCAGCCTGAATGAGGTAATACAAAAGCTTGCAGCCACTAAATCCTTC
20110601C-012836 : AACGTCCAGCAGACAGAAAACATTCTCTACATGACGCTTGAGACAATAAAGGAACTGGCT
---------+---------+---------+---------+---------+---------+ 603
LVRM1_0204_B07.b : AACGTCCAGCAGACAGAAAACATTCTCTACATGACGCTTGAGACAATAAAGGAACTGGCT
LVRM1_0115_E01.b : AACGTCCAGCAGACAGAAAACATTCTCTACATGACGCTTGAGACAATAAAGGAACTGGCT
KDN01_0011_E10.b : AACGTCCAGCAGACAGAAAACATTCTCTACATGACGCTTGAGACAATAAAGGAACTGGCT
KDN01_0003_F08.b : AACGTCCAGCAGACAGAAAACATTCTCTACATGACGCTTGAGACAATAAAGGAACTGGCT
20110601C-012836 : CCTTCCCTGCTGGATGAAAAGAACTTGTCCCTTACCGATG****************TGAC
---------+---------+---------+---------+---------+---------+ 647
LVRM1_0204_B07.b : CCTTCCCTGCTGGATGAAAAGAACTTGTCCCTTACCGATGGTAAACCCAAGGCCATTGAC
LVRM1_0115_E01.b : CCTTCCCTGCTGGATGAAAAGAACTTGTCCCTTACCGATGGTAAACCCAAGGCCATTGAC
KDN01_0011_E10.b : CCTTCCCTGCTGGATGAAAAGAACTTGTCCCTTACCGATG****************TGAC
KDN01_0003_F08.b : CCTTCCCTGCTGGATGAAAAGAACTTGTCCCTTACCGATG****************TGAC
20110601C-012836 : CAAGAGCAGTTTCAACTCTCATCCCTGGAACCTTCCCACGCTGCCTTGGTGAATCAATTA
---------+---------+---------+---------+---------+---------+ 707
LVRM1_0204_B07.b : CAAGAGCAGTTTCAACTCTCATCCCTGGAACCTTCCCACGCTGCCTTGGTGAAATCATTA
LVRM1_0115_E01.b : CAAGAGCAGTTTCAACTCTCATCCCTGGAACCTTCCCACGCTGCCTTGGTGAATCAATTA
KDN01_0011_E10.b : CAAGAGCAGTTTCAACTCTCATCCCTGGAACCTTCCCACGCTGCCTTGGTGAATCAATTA
KDN01_0003_F08.b : CAAGAGCAGTTTCAACTCTCATCCCTGGAACCTTCCCACGCTGCCTTGGTGAAATCATTA
20110601C-012836 : TGGCAATTCGGTGGCAATGAGAGGAGCCAGAGATTCATCGAGCGCTGCATCCGGAACTTC
---------+---------+---------+---------+---------+---------+ 767
LVRM1_0204_B07.b : TGGCAATTCGGTGGCAATGAGAGGn
LVRM1_0115_E01.b : TGGCAATTCGG
KDN01_0011_E10.b : TGGCAATTCGGTGGCAATGAGAGGAGCCAGAGATTCATCGAGCGCTGCATCCGGAACTTC
KDN01_0003_F08.b : TGGCAATTCGGTGGCAATGAGAGGAGCCAGAGATTCATCGAGCGCTGCATCCGGAACTTC
20110601C-012836 : CCCTCCGTCTGCCTGCTAGGGCCTGAGGGGACCCCGATAGCTTGGTCCCTGATGGACCAG
---------+---------+---------+---------+---------+---------+ 827
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : CCCTCCGTCTGCCTGCTAGGGCCTGAGGGGACCCCGATAGCTTGGTCCCTGATGGACCAG
KDN01_0003_F08.b : CCCTCCGTCTGCCTGCTAGGGCCTGAGGGGACCCCGATAGCTTGGTCCCTGATGGACCAN
20110601C-012836 : ACAGGAGAGATGCGGATGGCAGGCACCAAACTTGAGTACCGGGCCCAGGGCCTCGTCACC
---------+---------+---------+---------+---------+---------+ 887
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : ACAGGAGAGATGCGGATGGCANGCACCAAACTTGAGTACCGGGCCCAGGGCCTCGTCACC
KDN01_0003_F08.b : ACA*GANAGATGCGGATGGCAGGCACCAAACTTGAATACCGGGCCCAGGGCCTCGTCACC
20110601C-012836 : TACGTCATCTTTTCCCATTCCCAG*TTCTGACCAAACTCGGTTTCCCCTCCTATTCTCAC
---------+---------+---------+---------+---------+---------+ 946
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : TACGTCATCTTTTCCCATTCCCAGGTTCTGACCAAACTCGGTTTCCCCTCCTATTCTCAC
KDN01_0003_F08.b : TACGTCATCTTTTCCCATTCCCAG*TTCTGACCAAACTCGGTTTCCCTTCTTATTCTCAC
20110601C-012836 : GTAGACAAGAAAAACAAAATTATGCAGAAGATGAGTCACACTCTGAATCACCTTCGCATG
---------+---------+---------+---------+---------+---------+ 1006
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : GTAGACNAGAGAAACAAAATTATGCAGAAGATGAGTCACACTCTGAATCACCTTCGCATG
KDN01_0003_F08.b : GTAGACAAGAAAAACCAAATTttccccagaaagaatcccactctgaatccctttccatgc
20110601C-012836 : CCCTGTAGCTGGAATCAGTGGAACTGTGTGCCTCTGTGAAGCAGCCCTGAACCC......
---------+---------+---------+---------+---------+---------+ 1060
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : CCCTGTAGCTGGAATCAGTGGAACTGTGTGCCTCTGTGAAGCAGCCCTGAACCCagacag
KDN01_0003_F08.b : cctgtaactgaaatctggaaactggtgctccgtaaacaacctaacccctaacatggggaa
20110601C-012836 : ............................................................
---------+---------+---------+---------+---------+---------+ 1060
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : tggggatgggcttgaagctgtgggtaaacgaaggggagcctaactgtcattgaatcatca
KDN01_0003_F08.b : tgccttaagcttgggtaaacaaagggaagctaacttgccttgaatccccaaaaaaaggga
20110601C-012836 : ............................................................
---------+---------+---------+---------+---------+---------+ 1060
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : ataagtattggagctgtccgtataaaagtatacatatggctatccggactggtcattaaa
KDN01_0003_F08.b : tcctccctaaaaggttaccaaatgctttcgggccggtccttaaaaaagaaccccctttaa
20110601C-012836 : ............................................................
---------+---------+---------+---------+---------+---------+ 1060
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : aaaatgaaccacccttccaaacaaaaaaagggcttcggtgggctcatagttcaaaccaaa
KDN01_0003_F08.b : aacaaaaaaggattccgttggcccaaggtcaaccaaaaatccgggagtgggttccccccc
20110601C-012836 : ............................................................
---------+---------+---------+---------+---------+---------+ 1060
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : agttctggggttggggtaccccgcccctcccgggtaaataccatcccagggtgtgggtgg
KDN01_0003_F08.b : ccccaccggtaaaaccccttccaaaggtgcctggggggggaaccccccaggccccccccg
20110601C-012836 : ............................................................
---------+---------+---------+---------+---------+---------+ 1060
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : tggggatcgctccatgcccaccggattctgccggggcgttggaaaaattccttgggaaaa
KDN01_0003_F08.b : gtttctggccgggggctcaaaaaaaactttttcttagggaaaaaaaaaaaaagtttgttg
20110601C-012836 : ............................................................
---------+---------+---------+---------+---------+---------+ 1060
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : aaaagaaaggggggggcgttgaaccccccaagtgttgtgagngaanntttnnnnttattn
KDN01_0003_F08.b : aggggcggaaaaaaaaaaccccccccaaaaaaaaagtttttttttttaag
20110601C-012836 : ............................................................
---------+---------+---------+---------+---------+---------+ 1060
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : nnnnnntnntnnnnnnnnnnngatccacgccgcatcaannnnnnnnnnnnnnnnnnnnnn
KDN01_0003_F08.b :
20110601C-012836 : ............................................................
---------+---------+---------+---------+---------+---------+ 1060
LVRM1_0204_B07.b :
LVRM1_0115_E01.b :
KDN01_0011_E10.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
KDN01_0003_F08.b :