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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-013730

Length: 889

Sequence:  [FASTA format sequence]
GGGAAGCGAT GGTGATGCTG GAACAAACAT GGCTGCCCCG GCGCCCGTCG GCCTCTCGGG
CTCACGCAGT CCTCTGCTGG CCGCCGGACT TCGGCTGCTC CCGCTGCTGG GGCTGCTGCA
GCTGCTGGCC GAGCCCGGCC TGGGCCGCGT CCACCACCTG GCGCTCAAGG ACGACGTGAG
GCATAAGGTT CATCTGAACA CTTTTGGATT CTTCAAGAAT GGGTACATGA TGGTGAATGT
CAGTAGCCTT TCAGTGAATG AGCCTGAAGG AGCCACAGAC AAGGATGCAA CTATTGGATT
CAGCCTAGAC CGTACAAAGA ATGATGGATT TTCTTCTTAC CTGGATGAAG ATGTGGATTA
TTGTATTTTA AAGAAACAGT TCACCTCTGT CACCCTTCTA ATCCTAAACA TCTCCAGAAG
TGAAGTGAAA GTAAAATCTC CCCCAGAAGC CGGTACCCAG TTACCAAAGA TCATCTTCAA
CAAGGACGAG AAGGTCCTCG GTCAGAGCCC GGAGCCTGCC GTTAGCCCTG TTTCAGCAGG
CAGCCAGACG CAGAAAAAGC AAGACAGTGG AAAGTCCAAA AGGAGTACAG TGGATTCAAA
GGCAACAGGC GAGAAATCCT TTTCCGTTCG TAATAATGAT GGGGCAGTTT CATTTCAGTT
TTTCTTTAAC ATCAGCACTG ATGACCAAGA AGGCCTGTAC AGTCTTTATT TTCATAAATG
CCCTGGAAGC AAAATAAGGT CTAATGACAA GTTTTCATTC AGCCTTGATG TGAGTACCAC
ATGGAAGCTG TCCCACATGC GTTTTGTCAG CCGTGTAAGA TGTGAGGCAT TTCTTTCCTT
GTAAGAGTGG TTTGGTTTTG CTTTCGTTTT TTGCTTTTTA NGGCTGAAC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		GPR107	protein GPR107 isoform 2 [Homo sapiens].	356	2e-98	O
		GPR107	protein GPR107 isoform 1 [Homo sapiens].	356	2e-98	O
		GPR107	protein GPR107 isoform 3 [Homo sapiens].	356	2e-98	O
		GPR108	protein GPR108 [Homo sapiens].	77	2e-14	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Gpr107	protein GPR107 precursor [Mus musculus].	316	1e-86	O
		Gpr108	protein GPR108 precursor [Mus musculus].	73.6	2e-13	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC480694	PREDICTED: similar to G protein-coupled receptor 107 [Canis familiaris].	395	e-110
		LOC476727	PREDICTED: similar to G protein-coupled receptor 108 [Canis familiaris].	70.5	2e-12

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		GPR107	protein GPR107 [Bos taurus].	387	e-108	O
		GPR108	protein GPR108 precursor [Bos taurus].	77	2e-14	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100521766	PREDICTED: hypothetical protein LOC100521766 isoform 2 [Sus scrofa].	115	2e-41	O

Alignment:      TOP

20110601C-013730 : ...................................................GGGAAGCGA
                   ---------+---------+---------+---------+---------+---------+ 9
THY01_0105_B12.b : agtgtcaaaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtGGGAAGCGA
LVRM1_0208_B06.b :                                       xxxxxxxxxxxxxxxxxxxxxx
OVRT1_0061_A07.b :       nnnccttcagcgccggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0080_C07.b :                  nnnnggatcaacagcxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-013730 : TGGTGATGCTGGAACAAACATGGCTGCCCCGGCGCCCGTCGGCCTCTCGGGCTCACGCAG
                   ---------+---------+---------+---------+---------+---------+ 69
THY01_0105_B12.b : TGGTGATGCTGGAACAAACATGGCTGCCCCGGCGCCCGTCGGCCTCTCGGGCTCACGCAG
LVRM1_0208_B06.b : xxxxxxxxxxxxxxxxxxCATGGCTGCCCCGGCGCCCGTCGGCCTCTCGGGCTCACGCAG
OVRT1_0061_A07.b : xxxxxxxxxxxxxxxxxxCATGGCTGCCCCGGCGCCCGTCGGCCTCTCGGGCTCACGCAG
ITT01_0080_C07.b : xxxxxxxxxxxxxxxxxxCATGGCTGCCCCGGCGCCCGTCGGCCTCTCGGGCTCACGCAG


20110601C-013730 : TCCTCTGCTGGCCGCCGGACTTCGGCTGCTCCCGCTGCTGGGGCTGCTGCAGCTGCTGGC
                   ---------+---------+---------+---------+---------+---------+ 129
THY01_0105_B12.b : TCCTCTGCTGGCCGCCGGACTTCGGCTGCTCCCGCTGCTGGGGCTGCTGCAGCTGCTGGC
LVRM1_0208_B06.b : TCCTCTGCTGGCCGCCGGACTTCGGCTGCTCCCGCTGCTGGGGCTGCTGCAGCTGCTGGC
OVRT1_0061_A07.b : TCCTCTGCTGGCCGCCGGACTTCGGCTGCTCCCGCTGCTGGGGCTGCTGCAGCTGCTGGC
ITT01_0080_C07.b : TCCTCTGCTGGCCGCCGGACTTCGGCTGCTCCCGCTGCTGGGGCTGCTGCAGCTGCTGGC


20110601C-013730 : CGAGCCCGGCCTGGGCCGCGTCCACCACCTGGCGCTCAAGGACGACGTGAGGCATAAGGT
                   ---------+---------+---------+---------+---------+---------+ 189
THY01_0105_B12.b : CGAGCCCGGCCTGGGCCGCGTCCACCACCTGGCGCTCAAGGACGACGTGAGGCATAAGGT
LVRM1_0208_B06.b : CGAGCCCGGCCTGGGCCGCGTCCACCACCTGGCGCTCAAGGACGACGTGAGGCATAAGGT
OVRT1_0061_A07.b : CGAGCCCGGCCTGGGCCGCGTCCACCACCTGGCGCTCAAGGACGACGTGAGGCATAAGGT
ITT01_0080_C07.b : CGAGCCCGGCCTGGGCCGCGTCCACCACCTGGCGCTCAAGGACGACGTGAGGCATAAGGT


20110601C-013730 : TCATCTGAACACTTTTGGATTCTTCAAGAATGGGTACATGATGGTGAATGTCAGTAGCCT
                   ---------+---------+---------+---------+---------+---------+ 249
THY01_0105_B12.b : TCATCTGAACACTTTTGGATTCTTCAAGAATGGGTACATGATGGTGAATGTCAGTAGCCT
LVRM1_0208_B06.b : TCATCTGAACACTTTTGGATTCTTCAAGAATGGGTACATGATGGTGAATGTCAGTAGCCT
OVRT1_0061_A07.b : TCATCTGAACACTTTTGGATTCTTCAAGAATGGGTACATGATGGTGAATGTCAGTAGCCT
ITT01_0080_C07.b : TCATCTGAACACTTTTGGATTCTTCAAGAATGGGTACATGATGGTGAATGTCAGTAGCCT


20110601C-013730 : TTCAGTGAATGAGCCTGAAGGAGCCACAGACAAGGATGCAACTATTGGATTCAGCCTAGA
                   ---------+---------+---------+---------+---------+---------+ 309
THY01_0105_B12.b : TTCAGTGAATGAGCCTGAAGGCGCCACAGACAAGGACGCAACTATTGGATTCAGCCTAGA
LVRM1_0208_B06.b : TTCAGTGAATGAGCCTGAAGGAGCCACAGACAAGGATGCAACTATTGGATTCAGCCTAGA
OVRT1_0061_A07.b : TTCAGTGAATGAGCCTGAAGGAGCCACAGACAAGGATGCAACTATTGGATTCAGCCTAGA
ITT01_0080_C07.b : TTCAGTGAATGAGCCTGAAGGAGCCACAGACAAGGACGCAACTATTGGATTCAGCCTAGA


20110601C-013730 : CCGTACAAAGAATGATGGATTTTCTTCTTACCTGGATGAAGATGTGGATTATTGTATTTT
                   ---------+---------+---------+---------+---------+---------+ 369
THY01_0105_B12.b : CCGTACAAAGAATGATGGATTTTCTTCTTACCTGGATGAAGATGTGGATTATTGTATTTT
LVRM1_0208_B06.b : CCGTACAAAGAATGATGGATTTTCTTCTTACCTGGATGAAGATGTGGATTATTGAATTTT
OVRT1_0061_A07.b : CCGTACAAAGAATGATGGATTTTCTTCTTACCTGGATGAAGATGTGGATTATTGTATTTT
ITT01_0080_C07.b : CCGTACAAAGAATGATGGATTTTCTTCTTACCTGGATGAAGATGTGGATTATTGTATTTT


20110601C-013730 : AAAGAAACAGTTCACCTCTGTCACCCTTCTAATCCTAAACATCTCCAGAAGTGAAGTGAA
                   ---------+---------+---------+---------+---------+---------+ 429
THY01_0105_B12.b : AAAGAAACAGTTCACCTCTGTCACCCTTCTAATCCTAAACATCTCCAGAAGTGAAGTGAA
LVRM1_0208_B06.b : AAAGAAACAGTTCACCTCTGTCACCCTTCTAATCCTAAACATCTCCAGAAGTGAAGTGAA
OVRT1_0061_A07.b : AAAGAAACAGTTCACCTCTGTCACCCTTCTAATCCTAAACATCTCCAGAAGTGAAGTGAA
ITT01_0080_C07.b : AAAGAAACAGTTCACCTCTGTCACCCTTCTAATCCTAAACATCTCCAGAAGTGAAGTGAA


20110601C-013730 : AGTAAAATCTCCCCCAGAAGCCGGTACCCAGTTACCAAAGATCATCTTCAACAAGGACGA
                   ---------+---------+---------+---------+---------+---------+ 489
THY01_0105_B12.b : AGTAAAATCTCCCCCAGAAGCCGGTACCCAGTTACCAAAGATCATCTTCAACAAGGACGA
LVRM1_0208_B06.b : AGTAAAATCTCCCCCAGAAGCCGGTACCCAGTTACCAAAGATCATCTTCAACAAGGACGA
OVRT1_0061_A07.b : AGTAAAATCTCCCCCAGAAGCCGGTACCCAGTTACCAAAGATCATCTTCAACAAGGACGA
ITT01_0080_C07.b : AGTAAAATCTCCCCCAGAAGCCGGTACCCAGTTACCAAAGATCATCTTCAACAAGGACGA


20110601C-013730 : GAAGGTCCTCGGTCAGAGCCCGGAGCCTGCCGTTAGCCCTGTTTCAGCAGGCAGCCAGAC
                   ---------+---------+---------+---------+---------+---------+ 549
THY01_0105_B12.b : GAAGGTCCTCGGTCAGAGCCCGGAGCCTGCCCTTAGCCCTGTTTCAGCAGGCAGCCCGAC
LVRM1_0208_B06.b : GAAGGTCCTCGGTCAGAGCCCGGAGCCTGCCCTTAGCCCTGTTTCAGCAGGCAGCCAGAC
OVRT1_0061_A07.b : GAAGGTCCTCGGTCAGAGCCCGGAGCCTGCCGTTAGCCCTGTTTCAGCAGGCAGCCAGAC
ITT01_0080_C07.b : GAAGGTCCTCGGTCAGAGCCCGGAGCCTGCCGTTAGCCCTGTTTCAGCAGGCAGCCAGAC


20110601C-013730 : GCAGAAAAAGCAAGACAGTGGAAAGTCCAAAAGGAGTACAGTGGATTCAAAGGCAACAGG
                   ---------+---------+---------+---------+---------+---------+ 609
THY01_0105_B12.b : GCAcaagaaacagaaagtggaaagttccaaagagttattgga                 
LVRM1_0208_B06.b : GCAGAAAAAACAAGACAGTGGAAAGTCCAAAAGGAGTACAGTGGAATTCAAGGCAACAGG
OVRT1_0061_A07.b : GCAGAAAAAGCAAGACAGTGGAAAGTCCAAAAGGAGTACAGTGGATTCAAAGGCAACAGG
ITT01_0080_C07.b : GCAGAAAAAGCAAGACAGTGGAAAGTCCAAAAGGAGTACAGTGGATTCAAAGGCAACAGG


20110601C-013730 : CGAGAAATCCTTTTCCGTTCGTAATAATGATGGGGCAGTTTCATTTCAGTTTTTCTTTAA
                   ---------+---------+---------+---------+---------+---------+ 669
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b : CGAGAAATCCTTTTCCGTTCGTAATAATGATGGGGCAGTTTCATTTCAGTTTTTCTTTAA
OVRT1_0061_A07.b : CGAGAAATCCTTTTCCGTTCGTAATAATGATGGGGCAGTTTCATTTCAGTTTTTCTTTAA
ITT01_0080_C07.b : CGAGAAATCCTTTTCCGTTCGTAATAATGATGGGGCAGTTTCATTTCAGTTTTTCTTTAA


20110601C-013730 : CATCAGCACTGATGACCAAGAAGGCCTGTACAGTCTTTATTTTCATAAATGCCCTGGAAG
                   ---------+---------+---------+---------+---------+---------+ 729
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b : CATCAGCACTGATGACCA*GAAGGCCTGTACAGTCTTTATTTTCATAAATGCCCTGGAAA
OVRT1_0061_A07.b : CATCAGCACTGATGACCAAGAAGGCCTATACAGTCTTTATTTTCATAAATGCCCTGGAAG
ITT01_0080_C07.b : CATCAGCACTGATGACCAAGAAGGCCTGTACAGTCTTTATTTTCATAAATGCCCTGGAAG


20110601C-013730 : CAAAATAAGGTCTAATGACAAGTTTTCATTCAGCCTTGATGTGAGTACCACATGGAAGCT
                   ---------+---------+---------+---------+---------+---------+ 789
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b : GCAAATAAGGTCTAATGACNAGTTTTCATTCAGCCTT                      
OVRT1_0061_A07.b : CAAAATAAGGTCTAATGACAAGTTTTCATTCAGCCTTGATatcgaaatcacagagaaaaa
ITT01_0080_C07.b : CAAAATAAGGTCTAATGACAAGTTTTCATTCAGCCTTGATGTGAGTACCACATGGAAGCT


20110601C-013730 : GTCCCACATGCGTTTTGTCAGCCGTGTAAGATGTGAGGCATTTCTTTCCTTGTAAGAGTG
                   ---------+---------+---------+---------+---------+---------+ 849
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b :                                                             
OVRT1_0061_A07.b : tcctgacagctccctctcagcgggagagattcctctccctaaattaaacatttcctggac
ITT01_0080_C07.b : GTCCCACATGCGTTTTGTCAGCCGTGTAAGATGTGAGGCATTTCTTTCCTTGTAAGAGTG


20110601C-013730 : GTTTGGTTTTGCTTTCGTTTTTTGCTTTTTANGGCTGAAC....................
                   ---------+---------+---------+---------+---------+---------+ 889
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b :                                                             
OVRT1_0061_A07.b : ctttttcttttttctctctgggactgtccggaatcccatcctttcccaacgaaggaacga
ITT01_0080_C07.b : GTTTGGttttgctttcgttttttgctttttanggctgaacacnngggttttgggaggttt


20110601C-013730 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 889
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b :                                                             
OVRT1_0061_A07.b : tggggttaaaattcccgggtggagggggcccttccctttcccaagtccctttcttggggg
ITT01_0080_C07.b : ccngggttggggggtccttggggagctgggagttgccgggcttacncnncgcccccggcc


20110601C-013730 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 889
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b :                                                             
OVRT1_0061_A07.b : tccctggaaagaataacacttcttctcctcccggggctttccaattaaaggtgtggcctg
ITT01_0080_C07.b : cccccgaatctgagccatgtctgcaacccacgcggcaacaccggattcctaaccccctga


20110601C-013730 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 889
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b :                                                             
OVRT1_0061_A07.b : gtggtactcctccctcccccccgaaggggggggtggtctttatcactttcctgcttattg
ITT01_0080_C07.b : gcaaggccaggatcgaacccaaatcctcaggaacaccctttgggttctttactgctgagc


20110601C-013730 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 889
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b :                                                             
OVRT1_0061_A07.b : gaccgggggggcttttttcaacaaaactctttctaaaaaaaaaaaaaaatttttataatc
ITT01_0080_C07.b : ccaattgggaactccctgaagaagtatttttacaaaccctgaacaaaatggaagaaaagg


20110601C-013730 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 889
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b :                                                             
OVRT1_0061_A07.b : ttatccccctcccacgtctgggaaagatggccttcctctctaatattccccgggaagggg
ITT01_0080_C07.b : tggccaaaataaatttctctggtgggcacagggttccggggaaattcctaatgaaaaaaa


20110601C-013730 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 889
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b :                                                             
OVRT1_0061_A07.b : cccccaaccccggttggaagaaactctctttttgagggaaacgtgtgtggaggaacactc
ITT01_0080_C07.b : aaagggtccggaagtttttacattcccctggccttaaaagggggggttgcctggcacccc


20110601C-013730 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 889
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b :                                                             
OVRT1_0061_A07.b : ctctccgcggggtggc                                           
ITT01_0080_C07.b : ctcaaccatttaaaaaaagggttgccctcggccccctttttagccccgcaccccccatat


20110601C-013730 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 889
THY01_0105_B12.b :                                                             
LVRM1_0208_B06.b :                                                             
OVRT1_0061_A07.b :                                                             
ITT01_0080_C07.b : aaaggnaatgtgttcggcacccgggggaattctcaaaaaaatattctgtgtttt