Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-013848

Sequence: [FASTA format sequence] CCTCGCGCCG CGGGCCTCCC CGCGCCGCGC ACGTCCCCGT CCCGCGCCTC CGCCCCTTCG CCTGCTCGCT CCTTCCCGCC CTCCCTGCCG CGCCGGCAAA GCCGGCTTCC CCTCGGTCTC TCATGAATAT TGAGCGGCCC CTGTTGTATT TCCCGAGCTC CATTGCGGAA GCCGAGGCTC GCCATATTGT GCGGCGGCGC CGGCGGCCGC GGCGCCTTCT TCCCGTGTCT CACTCCGGCC GCGGCCAGCG GAGCCCCGGG CTGGGGCGGG AGCCGCAATG TCTCAGGCTG TGCAGACAAA TGGAACTCAA CCATTAAGCA AAACATGGGA ACTCAGTTTA TATGAATTAC AACGAACACC TCAGGAGGCA ATAACCGATG GCTTGGAAAT TGTGGTTTCA CCTCGAAGTC TACACAGTGA ACTAATGTGC CCGATTTGTT TGGACATGTT GAAGAATACC ATGACTACAA AGGAGTGTTT ACATCGTTTT TGTGCAGACT GCATTATCAC AGCCCTCAGA AGTGGCAATA AAGAATGCCC TACCTGTCGG AAAAAGCTAG TTTCCAAAAG ATCACTAAGA CCAGACCCAA ACTTTGATGC ACTCATCAGC AAAATTTATC CAAGTCGTGA TGAGTATGAA GCTCATCAAG AAAGAGTGTT AGCGAGGATC AACAAGCACA ATAATCAGCA AGCACTCAGT CACAGCATTG AGGAAGGACT GAAGATACAG GCCATGAACA GATTACAGCG AGGCAAGAAA CAGCAGATTG AAAATGGTAG TGGAGCAGAA GATAATGGTG ACAGTTCTCA CTGTAGTAAT GCATCCACGC ATAGCAATCA GGAAGCAGGA CCTAGCAACA AACGGACCAA AACATCTGAT GATTCTGGGC TTGAGCTTGA TAATAACAAT GCAGCAGTGG CAATTGATCC AGTCATGGAT GGTGCTAGTG AAATTGAGTT AGTATTCAGG CCTCATCCCA CACTTATGGA GAAAGATGAC AGTGCACAGA CAAGATACAT AAAGACTTCA GGTAATGCCA CTGTTGATCA TTTATCCAAG TATCTGGCTG TGAGGTTAGC TTTAGAAGAA CTTCGGAGCA AAGGAGAATT CAACCAGATG AATCTTGATA CAGCCAGTGA GAAGCAGTAT ACCATTTACA T

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
RNF2 E3 ubiquitin-protein ligase RING2 [Homo sapiens]. 587 e-168 O

RING1 E3 ubiquitin-protein ligase RING1 [Homo sapiens]. 328 8e-90 O

PCGF3 polycomb group RING finger protein 3 [Homo sapiens]. 56.6 4e-08 O

RNF138 E3 ubiquitin-protein ligase RNF138 isoform 3 [Homo sapiens]. 55.1 1e-07 O

BRCA1 breast cancer type 1 susceptibility protein isoform 2 [Homo sapiens]. 53.5 4e-07 O

BRCA1 breast cancer type 1 susceptibility protein isoform 1 [Homo sapiens]. 53.5 4e-07 O

BRCA1 breast cancer type 1 susceptibility protein isoform 5 [Homo sapiens]. 53.5 4e-07 O

BRCA1 breast cancer type 1 susceptibility protein isoform 4 [Homo sapiens]. 53.5 4e-07 O

RNF138 E3 ubiquitin-protein ligase RNF138 isoform 1 [Homo sapiens]. 53.5 4e-07 O

PCGF2 polycomb group RING finger protein 2 [Homo sapiens]. 50.8 2e-06 O

Locus	Definition	Score	E value	FL
RNF2	E3 ubiquitin-protein ligase RING2 [Homo sapiens].	587	e-168	O
RING1	E3 ubiquitin-protein ligase RING1 [Homo sapiens].	328	8e-90	O
PCGF3	polycomb group RING finger protein 3 [Homo sapiens].	56.6	4e-08	O
RNF138	E3 ubiquitin-protein ligase RNF138 isoform 3 [Homo sapiens].	55.1	1e-07	O
BRCA1	breast cancer type 1 susceptibility protein isoform 2 [Homo sapiens].	53.5	4e-07	O
BRCA1	breast cancer type 1 susceptibility protein isoform 1 [Homo sapiens].	53.5	4e-07	O
BRCA1	breast cancer type 1 susceptibility protein isoform 5 [Homo sapiens].	53.5	4e-07	O
BRCA1	breast cancer type 1 susceptibility protein isoform 4 [Homo sapiens].	53.5	4e-07	O
RNF138	E3 ubiquitin-protein ligase RNF138 isoform 1 [Homo sapiens].	53.5	4e-07	O
PCGF2	polycomb group RING finger protein 2 [Homo sapiens].	50.8	2e-06	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Rnf2 E3 ubiquitin-protein ligase RING2 [Mus musculus]. 588 e-168 O

Ring1 E3 ubiquitin-protein ligase RING1 [Mus musculus]. 328 5e-90 O

Pcgf3 polycomb group RING finger protein 3 [Mus musculus]. 58.2 1e-08 O

Trim31 E3 ubiquitin-protein ligase TRIM31 [Mus musculus]. 53.9 2e-07 O

Brca1 breast cancer type 1 susceptibility protein homolog [Mus musculus]. 53.9 2e-07 O

Rnf138 E3 ubiquitin-protein ligase RNF138 isoform 1 [Mus musculus]. 53.1 4e-07 O

Rnf138 E3 ubiquitin-protein ligase RNF138 isoform 2 [Mus musculus]. 53.1 4e-07 O

Pcgf1 polycomb group RING finger protein 1 [Mus musculus]. 51.2 2e-06 O

Gm378 PREDICTED: polycomb group RING finger protein 6-like [Mus musculus]. 50.4 3e-06 O

Gm378 PREDICTED: polycomb group RING finger protein 6-like [Mus musculus]. 50.4 3e-06 O

Locus	Definition	Score	E value	FL
Rnf2	E3 ubiquitin-protein ligase RING2 [Mus musculus].	588	e-168	O
Ring1	E3 ubiquitin-protein ligase RING1 [Mus musculus].	328	5e-90	O
Pcgf3	polycomb group RING finger protein 3 [Mus musculus].	58.2	1e-08	O
Trim31	E3 ubiquitin-protein ligase TRIM31 [Mus musculus].	53.9	2e-07	O
Brca1	breast cancer type 1 susceptibility protein homolog [Mus musculus].	53.9	2e-07	O
Rnf138	E3 ubiquitin-protein ligase RNF138 isoform 1 [Mus musculus].	53.1	4e-07	O
Rnf138	E3 ubiquitin-protein ligase RNF138 isoform 2 [Mus musculus].	53.1	4e-07	O
Pcgf1	polycomb group RING finger protein 1 [Mus musculus].	51.2	2e-06	O
Gm378	PREDICTED: polycomb group RING finger protein 6-like [Mus musculus].	50.4	3e-06	O
Gm378	PREDICTED: polycomb group RING finger protein 6-like [Mus musculus].	50.4	3e-06	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC480042 PREDICTED: similar to ring finger protein 2 isoform 2 [Canis familiaris]. 587 e-168 O

RING1 E3 ubiquitin-protein ligase RING1 [Canis lupus familiaris]. 328 6e-90 O

LOC480042 PREDICTED: similar to ring finger protein 2 isoform 4 [Canis familiaris]. 317 1e-86 O

LOC480042 PREDICTED: similar to ring finger protein 2 isoform 3 [Canis familiaris]. 274 1e-73 O

BRCA1 breast cancer type 1 susceptibility protein homolog [Canis lupus familiaris]. 62.4 8e-10 O

LOC612315 PREDICTED: similar to ring finger protein 3 [Canis familiaris]. 56.6 4e-08 O

LOC475785 PREDICTED: similar to polycomb group ring finger 1 [Canis familiaris]. 50.8 2e-06 O

Locus	Definition	Score	E value	FL
LOC480042	PREDICTED: similar to ring finger protein 2 isoform 2 [Canis familiaris].	587	e-168	O
RING1	E3 ubiquitin-protein ligase RING1 [Canis lupus familiaris].	328	6e-90	O
LOC480042	PREDICTED: similar to ring finger protein 2 isoform 4 [Canis familiaris].	317	1e-86	O
LOC480042	PREDICTED: similar to ring finger protein 2 isoform 3 [Canis familiaris].	274	1e-73	O
BRCA1	breast cancer type 1 susceptibility protein homolog [Canis lupus familiaris].	62.4	8e-10	O
LOC612315	PREDICTED: similar to ring finger protein 3 [Canis familiaris].	56.6	4e-08	O
LOC475785	PREDICTED: similar to polycomb group ring finger 1 [Canis familiaris].	50.8	2e-06	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
RNF2 E3 ubiquitin-protein ligase RING2 [Bos taurus]. 587 e-168 O

RING1 E3 ubiquitin-protein ligase RING1 [Bos taurus]. 328 6e-90 O

PCGF3 polycomb group RING finger protein 3 [Bos taurus]. 55.1 1e-07 O

BRCA1 breast cancer type 1 susceptibility protein homolog [Bos taurus]. 55.1 1e-07 O

RNF138 E3 ubiquitin-protein ligase RNF138 [Bos taurus]. 53.1 4e-07 O

TRIM26 PREDICTED: tripartite motif-containing 26 isoform 1 [Bos taurus]. 53.1 4e-07 O

TRIM26 PREDICTED: tripartite motif-containing 26 [Bos taurus]. 53.1 4e-07 O

TRIM26 PREDICTED: tripartite motif-containing 26 [Bos taurus]. 53.1 4e-07 O

PCGF2 polycomb group RING finger protein 2 [Bos taurus]. 51.6 1e-06 O

RFWD2 E3 ubiquitin-protein ligase RFWD2 [Bos taurus]. 51.2 2e-06 O

Locus	Definition	Score	E value	FL
RNF2	E3 ubiquitin-protein ligase RING2 [Bos taurus].	587	e-168	O
RING1	E3 ubiquitin-protein ligase RING1 [Bos taurus].	328	6e-90	O
PCGF3	polycomb group RING finger protein 3 [Bos taurus].	55.1	1e-07	O
BRCA1	breast cancer type 1 susceptibility protein homolog [Bos taurus].	55.1	1e-07	O
RNF138	E3 ubiquitin-protein ligase RNF138 [Bos taurus].	53.1	4e-07	O
TRIM26	PREDICTED: tripartite motif-containing 26 isoform 1 [Bos taurus].	53.1	4e-07	O
TRIM26	PREDICTED: tripartite motif-containing 26 [Bos taurus].	53.1	4e-07	O
TRIM26	PREDICTED: tripartite motif-containing 26 [Bos taurus].	53.1	4e-07	O
PCGF2	polycomb group RING finger protein 2 [Bos taurus].	51.6	1e-06	O
RFWD2	E3 ubiquitin-protein ligase RFWD2 [Bos taurus].	51.2	2e-06	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
LOC100517846 PREDICTED: e3 ubiquitin-protein ligase RING2-like isoform 3 [Sus scrofa]. 586 e-168 O

LOC100517846 PREDICTED: e3 ubiquitin-protein ligase RING2-like isoform 2 [Sus scrofa]. 586 e-168 O

LOC100517846 PREDICTED: e3 ubiquitin-protein ligase RING2-like isoform 1 [Sus scrofa]. 586 e-168 O

RING1 E3 ubiquitin-protein ligase RING1 [Sus scrofa]. 328 3e-90 O

BRCA1 PREDICTED: breast cancer type 1 susceptibility protein homolog isoform 2 [Sus scrofa]. 58.2 9e-09 O

BRCA1 PREDICTED: breast cancer type 1 susceptibility protein homolog isoform 1 [Sus scrofa]. 58.2 9e-09 O

LOC100515956 PREDICTED: e3 ubiquitin-protein ligase RNF138-like isoform 1 [Sus scrofa]. 53.1 3e-07 O

LOC100627815 PREDICTED: polycomb group RING finger protein 1-like [Sus scrofa]. 51.2 1e-06 O

TRIM26 tripartite motif-containing protein 26 [Sus scrofa]. 50.1 2e-06 O

Locus	Definition	Score	E value	FL
LOC100517846	PREDICTED: e3 ubiquitin-protein ligase RING2-like isoform 3 [Sus scrofa].	586	e-168	O
LOC100517846	PREDICTED: e3 ubiquitin-protein ligase RING2-like isoform 2 [Sus scrofa].	586	e-168	O
LOC100517846	PREDICTED: e3 ubiquitin-protein ligase RING2-like isoform 1 [Sus scrofa].	586	e-168	O
RING1	E3 ubiquitin-protein ligase RING1 [Sus scrofa].	328	3e-90	O
BRCA1	PREDICTED: breast cancer type 1 susceptibility protein homolog isoform 2 [Sus scrofa].	58.2	9e-09	O
BRCA1	PREDICTED: breast cancer type 1 susceptibility protein homolog isoform 1 [Sus scrofa].	58.2	9e-09	O
LOC100515956	PREDICTED: e3 ubiquitin-protein ligase RNF138-like isoform 1 [Sus scrofa].	53.1	3e-07	O
LOC100627815	PREDICTED: polycomb group RING finger protein 1-like [Sus scrofa].	51.2	1e-06	O
TRIM26	tripartite motif-containing protein 26 [Sus scrofa].	50.1	2e-06	O

Assembly Members: 8 TOP

Library Plate Loc. Read Name Accession Full Seq.

ADR01 0032 F03 ADR01_0032_F03.b DB784348
ADR01 0079 H02 ADR01_0079_H02.b DB788568
LVR01 0063 D02 LVR01_0063_D02.b BP443804
PTG01 0098 A08 PTG01_0098_A08.b FS712359
SMG01 0026 G01 SMG01_0026_G01.b FS715578 AK397479
SPL01 0069 G04 SPL01_0069_G04.b CJ019256
TCH01 0010 H09 TCH01_0010_H09.b CJ023227
THY01 0108 F03 THY01_0108_F03.b BP165882 AK239504

SNP: 1 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
702 A 6 0 0.750 W N CAC/H
G 2 0 0.250 CGC/R

Alignment: TOP

20110601C-013848 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SMG01_0026_G01.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnxxxxxxxxxxxxxxxxxx
TCH01_0010_H09.b :                                                             
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b :                                                             
LVR01_0063_D02.b :                                                             
PTG01_0098_A08.b :                                                             
ADR01_0032_F03.b :                                                             
ADR01_0079_H02.b :                                                             


20110601C-013848 : ....CCTCGCGCCGCGGGCCTCCCCGCGCCGCGCACGTCCCCGTCCCGCGCCTCCGCCCC
                   ---------+---------+---------+---------+---------+---------+ 56
SMG01_0026_G01.b : xxxxCCTCGCGCCGCGGGCCTCCCCGCGCCGCGCACGTCCCCGTCCCGCGCCTCCGCCCC
TCH01_0010_H09.b :                                                             
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b :                                                             
LVR01_0063_D02.b :                                                             
PTG01_0098_A08.b :                                                             
ADR01_0032_F03.b :                                                             
ADR01_0079_H02.b :                                                             


20110601C-013848 : TTCGCCTGCTCGCTCCTTCCCGCCCTCCCTGCCGCGCCGGCAAAGCCGGCTTCCCCTCGG
                   ---------+---------+---------+---------+---------+---------+ 116
SMG01_0026_G01.b : TTCGCCTGCTCGCTCCTTCCCGCCCTCCCTGCCGCGCCGGCAAAGCCGGCTTCCCCTCGG
TCH01_0010_H09.b : nnttgctaggacttgacagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b :                                              nnggcttggactatg
LVR01_0063_D02.b :                                      gtataaagaggcttggtgxxxxx
PTG01_0098_A08.b :                                                             
ADR01_0032_F03.b :                                                             
ADR01_0079_H02.b :                                                             


20110601C-013848 : TCTCTCATGAATATTGAGCGGCCCCTGTTGTATTTCCCGAGCTCCATTGCGGAAGCCGAG
                   ---------+---------+---------+---------+---------+---------+ 176
SMG01_0026_G01.b : TCTCTCATGAATATTGAGCGGCCCCTGTTGTATTTCCCGAGCTCCATTGCGGAAGCCGAG
TCH01_0010_H09.b : xxxxxxxxxxxxxggGAGCGGCCCCTGTTGTATTTCCCGAGCTCCATTGCGGAAGCCGAG
THY01_0108_F03.b :           gttgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPL01_0069_G04.b : acxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0063_D02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PTG01_0098_A08.b :     nctttatnnnnnngggagtaagcagcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0032_F03.b :          aaccaanggatacacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0079_H02.b :            aaaanttgatgaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-013848 : GCTCGCCATATTGTGCGGCGGCGCCGGCGGCCGCGGCGCCTTCTTCCCGTGTCTCACTCC
                   ---------+---------+---------+---------+---------+---------+ 236
SMG01_0026_G01.b : GCTCGCCATATTGTgcggcggcgccggcggccgcggcgccTTCTTCCCGTGTCTCACTCC
TCH01_0010_H09.b : GCTCGCCATATTGTgcggcggcgccggcggccgcggcgccTTCTTCCCGTGTCTCACTCC
THY01_0108_F03.b : xxxxtggATATTGTgcggcggcgccggcggccgcggcgccTTCTTCCCGTGTCTCACTCC
SPL01_0069_G04.b : xxxctggATATTGTgcggcggcgccggcggccgcggcgccTTCTTCCCGTGTCTCACTCC
LVR01_0063_D02.b : xxxxxxxxTATTGTgcggcggcgccggcggccgcggcgccTTCTTCCCGTGTCTCACTCC
PTG01_0098_A08.b : xxxxxxxxxxTTGTgcggcggcgccggcggccgcggcgccTTCTTCCCGTGTCTCACTCC
ADR01_0032_F03.b : xxxxxxxxxxTTGTgcggcggcgccggcggccgcggcgccTTCTTCCCGTGTCTCACTCC
ADR01_0079_H02.b : xxxxxxxxxxTTGTgcggcggcgccggcggccgcggcgccTTCTTCCCGTGTCTCACTCC


20110601C-013848 : GGCCGCGGCCAGCGGAGCCCCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGA
                   ---------+---------+---------+---------+---------+---------+ 296
SMG01_0026_G01.b : GGCCGCGGCCAGCGGAGCCCCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGA
TCH01_0010_H09.b : GGCCGCGGCCAGCGGAGCCCCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGA
THY01_0108_F03.b : GGCCGCGGCCAGCGGAGCCCCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGA
SPL01_0069_G04.b : GGCCGCGGCCAGCGGAGCCCCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGA
LVR01_0063_D02.b : GGCCGCGGCCAGCGGAGCCCCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGA
PTG01_0098_A08.b : GGCCGCGGCCAGCGGAGCCCCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGA
ADR01_0032_F03.b : GGCCGCGGCCAGCGGAGCCCCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGA
ADR01_0079_H02.b : GGCCGCGGCCAGCGGAGCCCCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGA


20110601C-013848 : CAAATGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAA
                   ---------+---------+---------+---------+---------+---------+ 356
SMG01_0026_G01.b : CAAATGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAA
TCH01_0010_H09.b : CAAATGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAA
THY01_0108_F03.b : CAAATGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAA
SPL01_0069_G04.b : CAAATGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAA
LVR01_0063_D02.b : CAAATGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAA
PTG01_0098_A08.b : CAAATGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAA
ADR01_0032_F03.b : CAAATGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAA
ADR01_0079_H02.b : CAAATGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAA


20110601C-013848 : CACCTCAGGAGGCAATAACCGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACA
                   ---------+---------+---------+---------+---------+---------+ 416
SMG01_0026_G01.b : CACCTCAGGAGGCAATAACCGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACA
TCH01_0010_H09.b : CACCTCAGGAGGCAATAACCGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACA
THY01_0108_F03.b : CACCTCAGGAGGCAATAACCGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACA
SPL01_0069_G04.b : CACCTCAGGAGGCAATAACCGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACA
LVR01_0063_D02.b : CACCTCAGGAGGCAATAACCGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACA
PTG01_0098_A08.b : CACCTCAGGAGGCAATAACCGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACA
ADR01_0032_F03.b : CACCTCAGGAGGCAATAACCGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACA
ADR01_0079_H02.b : CACCTCAGGAGGCAATAACCGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACA


20110601C-013848 : GTGAACTAATGTGCCCGATTTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGT
                   ---------+---------+---------+---------+---------+---------+ 476
SMG01_0026_G01.b : GTGAACTAATGTGCCCGATTTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGT
TCH01_0010_H09.b : GTGAACTAATGTGCCCGATTTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGT
THY01_0108_F03.b : GTGAACTAATGTGCCCGATTTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGT
SPL01_0069_G04.b : GTGAACTAATGTGCCCGATTTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGT
LVR01_0063_D02.b : GTGAGCTAATGTGCCCGATTTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGT
PTG01_0098_A08.b : GTGAACTAATGTGCCCGATTTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGT
ADR01_0032_F03.b : GTGAACTAATGTGCCCGATTTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGT
ADR01_0079_H02.b : GTGAACTAATGTGCCCGATTTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGT


20110601C-013848 : GTTTACATCGTTTTTGTGCAGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAAT
                   ---------+---------+---------+---------+---------+---------+ 536
SMG01_0026_G01.b : GTTTACATCGTTTTTGTGCAGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAAT
TCH01_0010_H09.b : GTTTACATCGTTTTTGTGCAGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAAT
THY01_0108_F03.b : GTTTACATCGTTTTTGTGCAGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAAT
SPL01_0069_G04.b : GTTTACATCGTTTTTGTGCAGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAAT
LVR01_0063_D02.b : GTTTACATCGTTTTTGTGCAGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAAT
PTG01_0098_A08.b : GTTTACATCGTTTTTGTGCAGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAAT
ADR01_0032_F03.b : GTTTACATCGTTTTTGTGCAGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAAT
ADR01_0079_H02.b : GTTTACATCGTTTTTGTGCAGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAAT


20110601C-013848 : GCCCTACCTGTCGGAAAAAGCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTG
                   ---------+---------+---------+---------+---------+---------+ 596
SMG01_0026_G01.b : GCCCTACCTGTCGGAAAAAGCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTG
TCH01_0010_H09.b : GCCCTACCTGTCGGAAAAAGCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTG
THY01_0108_F03.b : GCCCTACCTGTCGGAAAAAGCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTG
SPL01_0069_G04.b : GCCCTACCTGTCGGAAAAAGCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTG
LVR01_0063_D02.b : GCCCTACCTGTCGGAAAAAGCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTG
PTG01_0098_A08.b : GCCCTACCTGTCGGAAAAAGCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTG
ADR01_0032_F03.b : GCCCTACCTGTCGGAAAAAGCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTG
ADR01_0079_H02.b : GCCCTACCTGTCGGAAAAAGCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTG


20110601C-013848 : ATGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAG
                   ---------+---------+---------+---------+---------+---------+ 656
SMG01_0026_G01.b : ATGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAG
TCH01_0010_H09.b : ATGCACTCAT**GCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAG
THY01_0108_F03.b : ATGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAG
SPL01_0069_G04.b : ATGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAG
LVR01_0063_D02.b : ATGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAG
PTG01_0098_A08.b : ATGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAG
ADR01_0032_F03.b : ATGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAG
ADR01_0079_H02.b : ATGCACTCATCAGCAAAATTTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAG


20110601C-013848 : TGTTAGCGAGGATCAACAAGCACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAG
                   ---------+---------+---------+---------+---------+---------+ 716
SMG01_0026_G01.b : TGTTAGCGAGGATCAACAAGCACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAG
TCH01_0010_H09.b : TGTTAGCGAGGATCAACAAGCACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAG
THY01_0108_F03.b : TGTTAGCGAGGATCAACAAGCACAATAATCAGCAAGCACTCAGTCGCAGCATTGAGGAAG
SPL01_0069_G04.b : TGTTAGCGAGGATCAACAAGCACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAG
LVR01_0063_D02.b : TGTTAGCGAGGATCAACAAGCACAATAATCAGCAAGCACTCAGTCGCAGCATTGAGGAAG
PTG01_0098_A08.b : TGTTAGCGAGGATCAACAAGCACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAA
ADR01_0032_F03.b : TGTTAGCGAGGATCAACAAGCACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAG
ADR01_0079_H02.b : TGTTAGCGAGGATCAACAAGCACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAG


20110601C-013848 : GACTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAGAAACAGCAGATTGAAAATG
                   ---------+---------+---------+---------+---------+---------+ 776
SMG01_0026_G01.b : GACTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAGAAACAGCAGATTGAAAATG
TCH01_0010_H09.b : GACTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAGAAACAGCAGATTGAAAATG
THY01_0108_F03.b : GACTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAGAAnacagcgattgaaatgg
SPL01_0069_G04.b : GACTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAGAAACAGCAGATTGAAAATG
LVR01_0063_D02.b : GACTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAGAAACAGCAGATTGAAAATG
PTG01_0098_A08.b : GACTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAGAAACAGCAGATTGAAAATG
ADR01_0032_F03.b : GACTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAGAAACAGCAGATTGAAAATG
ADR01_0079_H02.b : GACTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAGAAACAGCAGATTGAAAATG


20110601C-013848 : GTAGTGGAGCAGAAGATAATGGTGACAGTTCTCACTGTAGTAATGCATCCACGCATAGCA
                   ---------+---------+---------+---------+---------+---------+ 836
SMG01_0026_G01.b : GTAGTGGAGCAGAAGATAATGGTGACAGTTCTCACTGTAGTAATGCATCCACGCATAACA
TCH01_0010_H09.b : GTAGTGGAGCAGAAGATAATGGTGACAGTTCTCACTGTAGTAATGCATCCACGCATAGCA
THY01_0108_F03.b : ttgtggagcaaa                                               
SPL01_0069_G04.b : GTAGTGGAGCAGAAGATAATGGTGACAGTTCTCACTGTAGTAATGCATCCACGCATAGCA
LVR01_0063_D02.b : GTAGTGGAGCAGAAGATAATGGTGACAGTTCTCACTGTAGTAATGCATCCACGCATAGCA
PTG01_0098_A08.b : GTAGTGAAGCAGAAGAATATGGTGACAGTTCTCACTGTAGTAATGCATCCACGCATAGCC
ADR01_0032_F03.b : GTAGTGGAGCAGAAGATAATGGTGACAGTTCTCACTGTAGTAATGCATCCACGCATAGCA
ADR01_0079_H02.b : GTAGTGGAGCAGAAGATAATGGTGACAGTTCTCACTGTAGTAATGCATCCACGCATAGCA


20110601C-013848 : ATCAGGAAGCAGGACCTAGCAACAAACGGACCAAAACATCTGATGATTCTGGGCTTGAGC
                   ---------+---------+---------+---------+---------+---------+ 896
SMG01_0026_G01.b : ATCAGGAAGCAGGACCTAGCAACAA*CGGAACAAAACATCTGATGATTCTGGGCCTGAAC
TCH01_0010_H09.b : ATCAGGAAGCAGGACCTAGCAACAAACGGACCAAAACATCTGATGATTCTGGGCTTGAGC
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b : ATCAGGAAGCAGGACCTAGCAACAAACGGACCAAAACATCTGATGATTCTGGGCTTGAGC
LVR01_0063_D02.b : ATCAGGAAGCAGGACCTAGCAACAAACGGACCAAAACATCTGATGATTCTGGGCTTGAGC
PTG01_0098_A08.b : ATCAGGAAGCAAGGACTAAGCACAAACGGACCAAA*CATCTGATGATTCGGGGCTTGAGC
ADR01_0032_F03.b : ATCAGGAAGCAGGACCTAGCAACAAACGGACCAAAACATCTGATGATTCTGGGCTTGAGC
ADR01_0079_H02.b : ATCAGGAAGCAGGACCTAGCAACAAACGGACCANAACATCTGATGATTCTGGGCTTGAGC


20110601C-013848 : TTGATAATAACAATGCAGCAGTGGCAATTGATCCAGTCATGGATGGTGCTAGTGAAATTG
                   ---------+---------+---------+---------+---------+---------+ 956
SMG01_0026_G01.b : TTGATAATAccatgccacattggcaattgatcccttcaggaatggggctagggaaattta
TCH01_0010_H09.b : TTGATAATAACAATGCAGCAGTGGCAATTGATCCAGTCATGGATGGTGCTAGTGAAATTG
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b : TTGATNAATACAATGCAGCAGTGGCAATTGATCCAGTCATGGATGGTGCTAGTGAAATTG
LVR01_0063_D02.b : TTGATAATAACAATGCAGCAGTGGCAATTGATCCAGTCATGGATGGTGCTAGTGAAATTG
PTG01_0098_A08.b : TTGATAATAACAATGCAACAGTGGCAATTGATCCAGTCctgaatgtgctagtgaaattga
ADR01_0032_F03.b : TTGATAATAACAATGCAGCAGTGGCAATTGATCCAGTCATGGATGGTGCTAGTGAAATTG
ADR01_0079_H02.b : TTGATAATAACAATGCAGCAGTGGCAATTGATCCAGTCATGGATGGTGCTAGTGAAATTG


20110601C-013848 : AGTTAGTATTCAGGCCTCATCCCACACTTATGGAGAAAGATGACAGTGCACAGACAAGAT
                   ---------+---------+---------+---------+---------+---------+ 1016
SMG01_0026_G01.b : aataataatcaggccctctcccccacttttggaaaaagaaaaacggggccaaaacaaaaa
TCH01_0010_H09.b : AGTTAGTATTCAGGCCTCATCCCACACTTATGGAGAAAGATGACAGTGCACAGACCAGAT
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b : AGTTAGTATTCAGGCCTCATCC*ACACTTATGGAGAAAAGATGACGTGCCCCGACCAGAT
LVR01_0063_D02.b : AGTTAGTATTCAGGCCTCATCCCACACTTATGGAGAAAGATGACAGTGCACAGACAAGAT
PTG01_0098_A08.b : ttaataattcgggcccatccccaccttatggaaaaaatgaagtggcacaaacaatatcat
ADR01_0032_F03.b : AGTTAGTATTCAGGCCTCATCCCACACTTATGGAGAAAGATGACNGTGCACAGACCAGAT
ADR01_0079_H02.b : AGTTAGTATTCAGGCCTCATCCCACACTTATGGAGAAAGATGACAGTGCACAGACAAGAT


20110601C-013848 : ACATAAAGACTTCAGGTAATGCCACTGTTGATCATTTATCCAAGTATCTGGCTGTGAGGT
                   ---------+---------+---------+---------+---------+---------+ 1076
SMG01_0026_G01.b : aataaaaaattcccggaaaggccctggttaacacttttcccaaaatcgggcttggaagtg
TCH01_0010_H09.b : ACATAAAGACTTCAGGGTATGCCACTGTTGATCATTTATCCNAGTATCTGGCTGTGAGGT
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b : TCCTAAAGACTTTCGGTAATGCCACTGTTGATCATTTAATCCAGTATCTGCCTGTGAGGT
LVR01_0063_D02.b : ACATAAAGACTTCAGGTAATGCCACTGTTGATCATTTATCCAAGTATCTGGCTGTGAGGG
PTG01_0098_A08.b : aaaaacttcgggcatgcccttgtgattatttacccaaaaatcggcgggaaggttacttta
ADR01_0032_F03.b : ACATAAAGACTTCCGGTAATGCCACTGTTGATCATTTATCA*AGTATCTGGCTGTGAGGT
ADR01_0079_H02.b : ACATAAAGACTTCNNGGTATGCCACTGTTGATCATTTATCCAAGTATCTGGCTGTGAGGT


20110601C-013848 : TAGCTTTAGAAGAACTTCGGAGCAAAGGAGAATTCAACCAGATGAATCTTGATACAGCCA
                   ---------+---------+---------+---------+---------+---------+ 1136
SMG01_0026_G01.b : accttttaaaaaaacttccgaccaaggaaaattcaaccccaataattttggaaccccccg
TCH01_0010_H09.b : TAGCTTTAGAAGAACTTCGGAGC*AAGGAGAAATCAACCAGATGAATCTTGATACAGCCA
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b : TAGCTTtagaagaaacttccgagcaagggagattcaacccgatgaatcttgataccgccc
LVR01_0063_D02.b : TAGCTTtagaagaacttcggaccaaaggagaatcaaaccagatgaaccttgataccgccc
PTG01_0098_A08.b : aaaaaactcggacccagggaaacccaccccattaatcttgtacccccccgggaaaacctt
ADR01_0032_F03.b : TAGCTTTAGAAGActtcngagcaangagaatcgaacagatgaatctgatacagcagtgag
ADR01_0079_H02.b : TAGCTTTAGAAGAACTTCGGAGCAAAGGAGAATCAANCCAGATGAATCTTGATACAGCCA


20110601C-013848 : GTGAGAAGCAGTATACCATTTACAT...................................
                   ---------+---------+---------+---------+---------+---------+ 1161
SMG01_0026_G01.b : ggaaaaaatattacccttttataaaaaaccgcccgggcccttcccagggttaaagaggct
TCH01_0010_H09.b : GTGAGAAGCAGTATACCATTTACATagcacggccatggcccagtcactgtgtaaaatggc
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b : gggaaaaacagtttaccatttacataggcacacgccaatggcccagttcctgggtttaaa
LVR01_0063_D02.b : gtggagaaccagtataacaatttacataaccaccagcccagtgggccagttcaccggtgt
PTG01_0098_A08.b : ttccctttttatttccacaccccgggccattaccggggaaaaggggccttttttttgaaa
ADR01_0032_F03.b : agcagtatacatttacatagcacagcagtggcagtcactgtgtaaatggctcttttcttt
ADR01_0079_H02.b : GTGAGAAGCAGTATACCATTTACATagncacagccagtgggcagttcactngtgtaaatg


20110601C-013848 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1161
SMG01_0026_G01.b : tttttcttggaaagtggccggaaaaaactgggaagggaaaaaccctggaaatttttttac
TCH01_0010_H09.b : tctttttcttgggaatggtcaggtgagaatactggnaaggtgacaaaccctggnaacttt
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b : tggctctttttcc                                              
LVR01_0063_D02.b : taaaatgggctcttttttcctttggaaatttggtcccaatgaaaaaatacctggaaaagg
PTG01_0098_A08.b : gggcccgggaaaaaacgggaaacaaaaaacccgtggaatttttttccccccccaaggggc
ADR01_0032_F03.b : ggaatgtcatgagaatctggaagtgacaacccaggaacttataccccccccaggagccaa
ADR01_0079_H02.b : ggctcttttcttttggaatngtcagtgagaaatactggaaagtgacnnaaccatggaact


20110601C-013848 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1161
SMG01_0026_G01.b : cccccaaggagaaagagagcttttatacacaccctcaaaaaagatattttaaccccctct
TCH01_0010_H09.b : atacgcaccccaaaggagcccaatggacttttactaacccgttctgaaaatgaattt  
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b :                                                             
LVR01_0063_D02.b : gaaaa                                                      
PTG01_0098_A08.b : aaaaaaagttttttaaaaaaccctttcaaaaaaatattttttacccctttctttaaaaaa
ADR01_0032_F03.b : tgaccttactacaccgtcggaaaagactttttaacctattctaaaataaaaggtcccctt
ADR01_0079_H02.b : tttatacgcccccccaaaggaccccaatgagcttttactacaccagtttctgaaatggac


20110601C-013848 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1161
SMG01_0026_G01.b : tataaaaaaagccccccttcttttgggaaaaaaaaaaaaagagaacgggttctgtggggg
TCH01_0010_H09.b :                                                             
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b :                                                             
LVR01_0063_D02.b :                                                             
PTG01_0098_A08.b : aagtcgcccctttttttgggaaaaaaaaaaaaaaaagcccttttttccttttgggccggc
ADR01_0032_F03.b : ctctttggcggnaaaaaanaaaaaaaaaaannnaggccattgtcactcggtcggccccaa
ADR01_0079_H02.b : ctttttatagccaatttcttaaaataaaggagtccccccctactttttgggcaggagaaa


20110601C-013848 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1161
SMG01_0026_G01.b : cgg                                                        
TCH01_0010_H09.b :                                                             
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b :                                                             
LVR01_0063_D02.b :                                                             
PTG01_0098_A08.b : ccctttatattccgggggggcaataataaacacttttttttgaaaggccccaggggttta
ADR01_0032_F03.b : atcccgaggcacatacaaccctttttaaggccaagaataaaaaaagcggcctttactcgg
ADR01_0079_H02.b : aannaannnnnaaaananaaaaaaaggccttgggtcaaatgcagggcggcccctataaat


20110601C-013848 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1161
SMG01_0026_G01.b :                                                             
TCH01_0010_H09.b :                                                             
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b :                                                             
LVR01_0063_D02.b :                                                             
PTG01_0098_A08.b : aataaggggggggcttttattttcgggggaaaaacctgttttttttaaaaaactttgggg
ADR01_0032_F03.b : ggaaaagggtttaaacttctggaaaaacccccaacccgaaaattgtttgggcccggcggg
ADR01_0079_H02.b : tcctcgggccccacttaccaaccatttttttaagagggcccaaagggggtaaaacaggcc


20110601C-013848 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1161
SMG01_0026_G01.b :                                                             
TCH01_0010_H09.b :                                                             
THY01_0108_F03.b :                                                             
SPL01_0069_G04.b :                                                             
LVR01_0063_D02.b :                                                             
PTG01_0098_A08.b : aaatttaaaccacccaaaaaatgcgggaaaattttttgggtt                 
ADR01_0032_F03.b : ttgaaaaaaaaaaatattttcctccc                                 
ADR01_0079_H02.b : ggcccgcttcaccccc