Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-014259

Sequence: [FASTA format sequence] AGATTGGCTG AAAGCCCTTC CAGTGAGCGT CTCACCGTTA CACGGCCTGC TCTGGCGCCA AAATGTCGCA GGTACCGGGA GTTATCCGGC GGTTGGACGA GACAGTGGTG AACCGCATCG CGGCAGGGGA GGTTATCCAG CGGCCGGCTA ATGCCATTAA GGAGATGATT GAGAACTGTT TAGATGCAAA ATCCACAAGT ATTCAAGTGG TGGTTAAAGA GGGAGGCCTG AAGTTGATTC AGATCCAAGA CAATGGCACT GGGATCAGGA AAGAAGATCT GGATATTGTG TGTGAGAGGT TCACCACAAG TAAACTGCAG TCCTTTGAGG ATTTAGCTCA TATTTCTACC TATGGCTTTC GGGGAGAGGC TTTGGCCAGC ATAAGCCATG TGGCACACGT CACCATTACA ACCAAAACAG CTGATGGGAA GTGCGCATAC AGAGCACATT ACTCAGATGG AAAGCTGAAA GCTCCTCCTA AACCATGTGC AGGCAATCAA GGAACCCAGA TCACGGTGGA GGACCTTTTT TACAACATAT CCACGAGAAG GAAGGCTTTA AAAAATCCAA GTGAAGAGTA TGGGAAAATT TTGGAAGTCG TTGGCAGGTA TTCAATACAC AATTCAGGCA TCAGTTTCTC GGTTAAAAAA CAAGGTGAGA CAGTAGCCGA CGTTAGGACA CTGCCCAATG CCACAACCGT GGACAACATT CGCTCCATTT TTGGAAATGC TGTCAGCCGA GAACTGATAG AAGTTGAATG TGAGGATAAA ACCCTCGCCT TCAAAATGAA TGGGTACATA TCCAATGCAA ACTACTCGGT GAAGAAGTGC ATCTTCTTAC TCTTCATCAA CCATCGTCTT GTAGAGTCAA CCTCCTTNAG AAAAGCATAG AAACGGTGTA TGCAGCTTAT TTGCTTAAAA CACACATCCC GTCCTGTACC TCAGTTTAGA AATCAGCCCC CAGAACGTGN ATGTCAACGT GCAACCCACG AAGCACGAGG TTCACTTCCT GCATGAAGAC CGCATCCTGG AGCGTGTACA GCAGCCCATT GAGAACAGGC TCCTGGGCTC

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
MLH1 DNA mismatch repair protein Mlh1 isoform 1 [Homo sapiens]. 518 e-168 O

MLH1 DNA mismatch repair protein Mlh1 isoform 2 [Homo sapiens]. 334 e-113 O

PMS2 mismatch repair endonuclease PMS2 isoform a [Homo sapiens]. 136 3e-32 O

PMS1 PMS1 protein homolog 1 isoform c [Homo sapiens]. 119 5e-27 O

PMS1 PMS1 protein homolog 1 isoform a [Homo sapiens]. 119 5e-27 O

PMS1 PMS1 protein homolog 1 isoform b [Homo sapiens]. 109 4e-24 O

MLH3 DNA mismatch repair protein Mlh3 isoform 1 [Homo sapiens]. 105 7e-23 O

MLH3 DNA mismatch repair protein Mlh3 isoform 2 [Homo sapiens]. 105 7e-23 O

MLH1 DNA mismatch repair protein Mlh1 isoform 3 [Homo sapiens]. 88.6 4e-34 O

MLH1 DNA mismatch repair protein Mlh1 isoform 3 [Homo sapiens]. 88.6 4e-34 O

Locus	Definition	Score	E value	FL
MLH1	DNA mismatch repair protein Mlh1 isoform 1 [Homo sapiens].	518	e-168	O
MLH1	DNA mismatch repair protein Mlh1 isoform 2 [Homo sapiens].	334	e-113	O
PMS2	mismatch repair endonuclease PMS2 isoform a [Homo sapiens].	136	3e-32	O
PMS1	PMS1 protein homolog 1 isoform c [Homo sapiens].	119	5e-27	O
PMS1	PMS1 protein homolog 1 isoform a [Homo sapiens].	119	5e-27	O
PMS1	PMS1 protein homolog 1 isoform b [Homo sapiens].	109	4e-24	O
MLH3	DNA mismatch repair protein Mlh3 isoform 1 [Homo sapiens].	105	7e-23	O
MLH3	DNA mismatch repair protein Mlh3 isoform 2 [Homo sapiens].	105	7e-23	O
MLH1	DNA mismatch repair protein Mlh1 isoform 3 [Homo sapiens].	88.6	4e-34	O
MLH1	DNA mismatch repair protein Mlh1 isoform 3 [Homo sapiens].	88.6	4e-34	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Mlh1 DNA mismatch repair protein Mlh1 [Mus musculus]. 509 e-165 O

Pms2 mismatch repair endonuclease PMS2 [Mus musculus]. 133 2e-31 O

Pms1 PMS1 protein homolog 1 [Mus musculus]. 126 3e-29 O

Mlh3 DNA mismatch repair protein Mlh3 [Mus musculus]. 111 1e-24 O

Locus	Definition	Score	E value	FL
Mlh1	DNA mismatch repair protein Mlh1 [Mus musculus].	509	e-165	O
Pms2	mismatch repair endonuclease PMS2 [Mus musculus].	133	2e-31	O
Pms1	PMS1 protein homolog 1 [Mus musculus].	126	3e-29	O
Mlh3	DNA mismatch repair protein Mlh3 [Mus musculus].	111	1e-24	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC477019 PREDICTED: similar to MutL protein homolog 1 isoform 5 [Canis familiaris]. 520 e-169 O

LOC477019 PREDICTED: similar to MutL protein homolog 1 isoform 1 [Canis familiaris]. 520 e-169 O

LOC477019 PREDICTED: similar to MutL protein homolog 1 isoform 2 [Canis familiaris]. 520 e-169 O

LOC477019 PREDICTED: similar to MutL protein homolog 1 isoform 4 [Canis familiaris]. 440 e-145 O

LOC479751 PREDICTED: similar to PMS1 protein homolog 2 (DNA mismatch repair protein PMS2) [Canis familiaris]. 137 2e-32 O

LOC478840 PREDICTED: similar to PMS1 protein homolog 1 (DNA mismatch repair protein PMS1) isoform 1 [Canis familiaris]. 124 1e-28 O

LOC478840 PREDICTED: similar to PMS1 protein homolog 1 (DNA mismatch repair protein PMS1) isoform 2 [Canis familiaris]. 112 5e-25 O

LOC480389 PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL protein homolog 3) isoform 1 [Canis familiaris]. 111 1e-24 O

LOC480389 PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL protein homolog 3) isoform 5 [Canis familiaris]. 111 1e-24 O

LOC477019 PREDICTED: similar to MutL protein homolog 1 isoform 3 [Canis familiaris]. 90.1 1e-34 O

Locus	Definition	Score	E value	FL
LOC477019	PREDICTED: similar to MutL protein homolog 1 isoform 5 [Canis familiaris].	520	e-169	O
LOC477019	PREDICTED: similar to MutL protein homolog 1 isoform 1 [Canis familiaris].	520	e-169	O
LOC477019	PREDICTED: similar to MutL protein homolog 1 isoform 2 [Canis familiaris].	520	e-169	O
LOC477019	PREDICTED: similar to MutL protein homolog 1 isoform 4 [Canis familiaris].	440	e-145	O
LOC479751	PREDICTED: similar to PMS1 protein homolog 2 (DNA mismatch repair protein PMS2) [Canis familiaris].	137	2e-32	O
LOC478840	PREDICTED: similar to PMS1 protein homolog 1 (DNA mismatch repair protein PMS1) isoform 1 [Canis familiaris].	124	1e-28	O
LOC478840	PREDICTED: similar to PMS1 protein homolog 1 (DNA mismatch repair protein PMS1) isoform 2 [Canis familiaris].	112	5e-25	O
LOC480389	PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL protein homolog 3) isoform 1 [Canis familiaris].	111	1e-24	O
LOC480389	PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL protein homolog 3) isoform 5 [Canis familiaris].	111	1e-24	O
LOC477019	PREDICTED: similar to MutL protein homolog 1 isoform 3 [Canis familiaris].	90.1	1e-34	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
MLH1 MutL protein homolog 1 [Bos taurus]. 527 e-171 O

MLH1 PREDICTED: mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) [Bos taurus]. 527 e-171 O

MLH1 PREDICTED: MutL protein homolog 1 [Bos taurus]. 527 e-171 O

PMS2 mismatch repair endonuclease PMS2 [Bos taurus]. 134 1e-31 O

PMS2 PREDICTED: PMS2 postmeiotic segregation increased 2 (S. cerevisiae) [Bos taurus]. 134 1e-31 O

PMS1 PMS1 protein homolog 1 [Bos taurus]. 127 2e-29 O

Locus	Definition	Score	E value	FL
MLH1	MutL protein homolog 1 [Bos taurus].	527	e-171	O
MLH1	PREDICTED: mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) [Bos taurus].	527	e-171	O
MLH1	PREDICTED: MutL protein homolog 1 [Bos taurus].	527	e-171	O
PMS2	mismatch repair endonuclease PMS2 [Bos taurus].	134	1e-31	O
PMS2	PREDICTED: PMS2 postmeiotic segregation increased 2 (S. cerevisiae) [Bos taurus].	134	1e-31	O
PMS1	PMS1 protein homolog 1 [Bos taurus].	127	2e-29	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
MLH1 DNA mismatch repair protein Mlh1 [Sus scrofa]. 537 e-175 O

PMS2 PREDICTED: mismatch repair endonuclease PMS2 [Sus scrofa]. 140 9e-34 O

MLH3 PREDICTED: DNA mismatch repair protein Mlh3 isoform 2 [Sus scrofa]. 108 5e-24 O

LOC100625027 PREDICTED: PMS1 protein homolog 1-like [Sus scrofa]. 99.8 2e-21 O

LOC100625982 PREDICTED: DNA mismatch repair protein Mlh1-like, partial [Sus scrofa]. 75.1 6e-14 O

Locus	Definition	Score	E value	FL
MLH1	DNA mismatch repair protein Mlh1 [Sus scrofa].	537	e-175	O
PMS2	PREDICTED: mismatch repair endonuclease PMS2 [Sus scrofa].	140	9e-34	O
MLH3	PREDICTED: DNA mismatch repair protein Mlh3 isoform 2 [Sus scrofa].	108	5e-24	O
LOC100625027	PREDICTED: PMS1 protein homolog 1-like [Sus scrofa].	99.8	2e-21	O
LOC100625982	PREDICTED: DNA mismatch repair protein Mlh1-like, partial [Sus scrofa].	75.1	6e-14	O

Assembly Members: 5 TOP

Library Plate Loc. Read Name Accession Full Seq.

AMP01 0025 G03 AMP01_0025_G03.b BW956893 AK389664
OVRT1 0020 A10 OVRT1_0020_A10.b FS688005
OVRT1 0081 G03 OVRT1_0081_G03.b FS693034
THY01 0001 G05 THY01_0001_G05.b BP167251
THY01 0112 D06 THY01_0112_D06.b BP163686 AK239557

SNP: 1 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
395 A 3 0 0.600 W S GCA/A
G 2 0 0.400 GCG/A

Alignment: TOP

20110601C-014259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
AMP01_0025_G03.b : nnnnttagaatcatxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b :                                                             
THY01_0001_G05.b :                                                             
OVRT1_0020_A10.b :                                                             


20110601C-014259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
AMP01_0025_G03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b :                                          nnnncctttagctgtcgxx
THY01_0001_G05.b :                                                             
OVRT1_0020_A10.b :                                                             


20110601C-014259 : ...........................................AGATTGGCTGAAAGCCC
                   ---------+---------+---------+---------+---------+---------+ 17
AMP01_0025_G03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGATTGGCTGAAAGCCC
THY01_0112_D06.b :       gtgtcaaaaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxC
OVRT1_0081_G03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgccC
THY01_0001_G05.b :                                                      gccaxxx
OVRT1_0020_A10.b :                   nccctttnnnnnnnnccgttagcgcacgagtgxxxxxxxxxx


20110601C-014259 : TTCCAGTGAGCGTCTCACCGTTACACGGCCTGCTCTGGCGCCAAAATGTCGCAGGTACCG
                   ---------+---------+---------+---------+---------+---------+ 77
AMP01_0025_G03.b : TTCCAGTGAGCGTCTCACCGTTACACGGCCTGCTCTGGCGCCAAAATGTCGCAGGTACCG
THY01_0112_D06.b : TTCCAGTGAGCGTCTCACCGTTACACGGCCTGCTCTGGCGCCAAAATGTCGCAGGTACCG
OVRT1_0081_G03.b : TTCCAGTGAGCGTCTCACCGTTACACGGCCTGCTCTGGCGCCAAAATGTCGCAGGTACCG
THY01_0001_G05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTCGCAGGTACCG
OVRT1_0020_A10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTCGCAGGTACCG


20110601C-014259 : GGAGTTATCCGGCGGTTGGACGAGACAGTGGTGAACCGCATCGCGGCAGGGGAGGTTATC
                   ---------+---------+---------+---------+---------+---------+ 137
AMP01_0025_G03.b : GGAGTTATCCGGCGGTTGGACGAGACAGTGGTGAACCGCATCGCGGCGGGGGAGGTTATC
THY01_0112_D06.b : GGAGTTATCCGGCGGTTGGACGAGACAGTGGTGAACCGCATCGCGGCAGGGGAGGTTATC
OVRT1_0081_G03.b : GGAGTTATCCGGCGGTTGGACGAGACAGTGGTGAACCGCATCGCGGCAGGGGAGGTTATC
THY01_0001_G05.b : GGAGTTATCCGGCGGTTGGACGAGACAGTGGTGAACCGCATCGCGGCAGGGGAGGTTATC
OVRT1_0020_A10.b : GGAGTTATCCGGCGGTTGGACGAGACAGTGGTGAACCGCATCGCGGCAGGGGAGGTTATC


20110601C-014259 : CAGCGGCCGGCTAATGCCATTAAGGAGATGATTGAGAACTGTTTAGATGCAAAATCCACA
                   ---------+---------+---------+---------+---------+---------+ 197
AMP01_0025_G03.b : CAGCGGCCGGCTAATGCCATTAAGGAGATGATTGAGAACTGTTTAGATGCAAAATCCACA
THY01_0112_D06.b : CAGCGGCCGGCTAATGCCATTAAGGAGATGATTGAGAACTGTTTAGATGCAAAATCCACA
OVRT1_0081_G03.b : CAGCGGCCGGCTAATGCCATTAAGGAGATGATTGAGAACTGTTTAGATGCAAAATCCACA
THY01_0001_G05.b : CAGCGGCCGGCTAATGCCATTAAGGAGATGATTGAGAACTGTTTAGATGCAAAATCCACA
OVRT1_0020_A10.b : CAGCGGCCGGCTAATGCCATTAAGGAGATGATTGAGAACTGTTTAGATGCAAAATCCACA


20110601C-014259 : AGTATTCAAGTGGTGGTTAAAGAGGGAGGCCTGAAGTTGATTCAGATCCAAGACAATGGC
                   ---------+---------+---------+---------+---------+---------+ 257
AMP01_0025_G03.b : AGTATTCAAGTGGTGGTTAAAGAGGGAGGCCTGAAGTTGATTCAGATCCAAGACAATGGC
THY01_0112_D06.b : AGTATTCAAGTGGTGGTTAAAGAGGGAGGCCTGAAGTTGATTCAGATCCAAGACAATGGC
OVRT1_0081_G03.b : AGTATTCAAGTGGTGGTTAAAGAGGGAGGCCTGAAGTTGATTCAGATCCAAGACAATGGC
THY01_0001_G05.b : AGTATTCAAGTGGTGGTTAAAGAGGGAGGCCTGAAGTTGATTCAGATCCAAGACAATGGC
OVRT1_0020_A10.b : AGTATTCAGGTGGTGGTTAAAGAGGGAGGCCTGAAGTTGATTCAGATCCAAGACAATGGC


20110601C-014259 : ACTGGGATCAGGAAAGAAGATCTGGATATTGTGTGTGAGAGGTTCACCACAAGTAAACTG
                   ---------+---------+---------+---------+---------+---------+ 317
AMP01_0025_G03.b : ACTGGGATCAGGAAAGAAGATCTGGATATTGTGTGTGAGAGGTTCACCACAAGTAAACTG
THY01_0112_D06.b : ACTGGGATCAGGAAAGAAGATCTGGATATTGTGTGTGAGAGGTTCACCACAAGTAAACTG
OVRT1_0081_G03.b : ACTGGGATCAGGAAAGAAGATCTGGATATTGTGTGTGAGAGGTTCACCACAAGTAAACTG
THY01_0001_G05.b : ACTGGGATCAGGAAAGAAGATCTGGATATTGTGTGTGAGAGGTTCACCACAAGTAAACTG
OVRT1_0020_A10.b : ACTGGGATCAGGAAAGAAGATCTGGATATTGTGTGTGAGAGGTTCACCACAAGTAAACTG


20110601C-014259 : CAGTCCTTTGAGGATTTAGCTCATATTTCTACCTATGGCTTTCGGGGAGAGGCTTTGGCC
                   ---------+---------+---------+---------+---------+---------+ 377
AMP01_0025_G03.b : CAGTCCTTTGAGGATTTAGCTCATATTTCTACCTATGGCTTTCGGGGAGAGGCTTTGGCC
THY01_0112_D06.b : CAGTCCTTTGAGGATTTAGCTCATATTTCTACCTATGGCTTTCGGGGAGAGGCTTTGGCC
OVRT1_0081_G03.b : CAGTCCTTTGAGGATTTAGCTCATATTTCTACCTATGGCTTTCGGGGAGAGGCTTTGGCC
THY01_0001_G05.b : CAGTCCTTTGAGGATTTAGCTCATATTTCTACCTATGGCTTTCGGGGAGAGGCTTTGGCC
OVRT1_0020_A10.b : CAGTCCTTTGAGGATTTAGCTCATATTTCTACCTATGGCTTTCGGGGAGAGGCTTTGGCC


20110601C-014259 : AGCATAAGCCATGTGGCACACGTCACCATTACAACCAAAACAGCTGATGGGAAGTGCGCA
                   ---------+---------+---------+---------+---------+---------+ 437
AMP01_0025_G03.b : AGCATAAGCCATGTGGCACACGTCGCCATTACAACCAAAACAGCTGATGGGAAGTGCGCA
THY01_0112_D06.b : AGCATAAGCCATGTGGCACACGTCACCATTACAACCAAAACAGCTGATGGGAAGTGCGCA
OVRT1_0081_G03.b : AGCATAAGCCATGTGGCGCACGTCACCATTACAACCAAAACAGCTGATGGGAAGTGCGCA
THY01_0001_G05.b : AGCATAAGCCATGTGGCACACGTCACCATTACAACCAAAACAGCTGATGGGAAGTGCGCA
OVRT1_0020_A10.b : AGCATAAGCCATGTGGCGCACGTCACCATTACAACCAAAACAGCTGATGGGAAGTGCGCA


20110601C-014259 : TACAGAGCACATTACTCAGATGGAAAGCTGAAAGCTCCTCCTAAACCATGTGCAGGCAAT
                   ---------+---------+---------+---------+---------+---------+ 497
AMP01_0025_G03.b : TACAGAGCACATTACTCAGATGGAAAGCTGAAAGCTCCTCCTAAACCATGTGCAGGCAAT
THY01_0112_D06.b : TACAGAGCACATTACTCAGATGGAAGGCTGAAAGCTCCTCCTAAACCATGTGCAGGCAAT
OVRT1_0081_G03.b : TACAGAGCACATTACTCATATGGAAAGCTGAAAGCTCCTCCTAAACCATGTGCAGGCAAT
THY01_0001_G05.b : TACAGAGCACATTACTCAGATGGAAAGCTGAAAGCTCCTCCTAAACCATGTGCAGGCAAT
OVRT1_0020_A10.b : TACAGAGCACATTACTCAGATGGAAAGCTGAAAGCTCCTCCTAAACCATGTGCAGGCAAT


20110601C-014259 : CAAGGAACCCAGATCACGGTGGAGGACCT*TTTTTACAACATATCCACGAGAAGGAAGGC
                   ---------+---------+---------+---------+---------+---------+ 556
AMP01_0025_G03.b : CAAGGAACCCAGATCACGGTGGAGGACCT*TTTTTACAACATATCCACGAGAAGGAAGGC
THY01_0112_D06.b : CAAGGAACCCAGATCACGGTGGAGGAACT*TTTTTACAACATATCCACGAGAAGGAAGGC
OVRT1_0081_G03.b : CAAGGAACCCAGATCACGGTGGAGGACCT*TTTTTACAACATATCCACGAGAAGGAAGGC
THY01_0001_G05.b : CAAGGAACCCAGATCACGGTGGAGGACCTTTTTTTACAACATATCCACGAGAAGGAAGGC
OVRT1_0020_A10.b : CAAGGAACCCAGATCACGGTGGAGGACCT*TTTTTACAACATATCCACGAGAAGGAAGGC


20110601C-014259 : TTTAAAAAATCCAAGTGAAGAGTATGGGAAAATTTTGGAAGTCGTTGGCAGGTATTCAAT
                   ---------+---------+---------+---------+---------+---------+ 616
AMP01_0025_G03.b : TTTAAAAAATCCAAGTGAAGAGTATGGGAAAATTTTGGAAGTCGTTGGCAGGTATTCAAT
THY01_0112_D06.b : TTTAAAAAATCCAgtgaagaagtatggaaaattttggaagttcttgcccgtattcatacc
OVRT1_0081_G03.b : TTTAAAAAATCCAAGTGAAGAGTATGGGAAAATTTTGGAAGTCGTTGGCAGGTATTCAAT
THY01_0001_G05.b : TTTAAAAAATCCAAGTGAAGAGTATGGGAAAGTTTTGGAAGTCGTTGGCAGGTATTCAAT
OVRT1_0020_A10.b : TTTAAAAAATCCAAGTGAAGAGTATGGGAAAATTTTGGAAGTCGTTGGCAGGTATTCAAT


20110601C-014259 : ACACAATTCAGGCATCAGTTTCTCGGTTAAAAAACAAGGTGAGACAGTAGCCGACGTTAG
                   ---------+---------+---------+---------+---------+---------+ 676
AMP01_0025_G03.b : ACACAATTCAGGCATCAGTTTCTCGGTTAAAAAACAAGGTGAGACAGTAGCCGACGTTAG
THY01_0112_D06.b : caantccgccccccttctcgctta                                   
OVRT1_0081_G03.b : ACACAATTCAGGCATCAGTTTCTCGGTTAAAAAACAAGGTGAGACAGTAGCCGACGTTAG
THY01_0001_G05.b : ACACAATTCAGGCATCAGTTTCTCCGGT*AAAAACAAGGTGAGACAGTAGTCGACGTTAG
OVRT1_0020_A10.b : ACACAATTCAGGCATCAGTTTCTCGGTTAAAAAACAAGGTGAGACAGTAGCCGACGTTAG


20110601C-014259 : GACACTGCCCAATGCCACAACCGTGGACAACATTCGCTCCATTTTTGGAAATGCTGTCAG
                   ---------+---------+---------+---------+---------+---------+ 736
AMP01_0025_G03.b : GACACTGCCCAATGCCACAACCGTGGACAACATTCGCTCCATTTTTGGAAATGCTGTTAG
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : GACACTGCCCAATGCCACAACCGTGGACAACATTCGCTCCATTTTTGGAAATGCTGTCAG
THY01_0001_G05.b : GACACTGCCCAATGCCACAACCGTGGACCACATTCGCTCCATTCTTGGACACGCTGCTAG
OVRT1_0020_A10.b : GACACTGCCCAATGCCACAACCGTGGACAACATTCGCTCCATTTTTGGAAATGCTGTCAG


20110601C-014259 : CCGAGAACTGATAGAAGTTGAATGTGAGGATAAAACCCTCGCCTTCAAAATGAATGGGTA
                   ---------+---------+---------+---------+---------+---------+ 796
AMP01_0025_G03.b : CCGAGAACTGATAGAAGTTGAATGTGAGGATAAAACCCTCGCCTTCAAAATGAATGGGTA
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : CCGAGAACTGATAGAACCTGAATGTGAGGATAAAACCCTCGCCTTCAAAAGGAATGGGTA
THY01_0001_G05.b : CCGAGAACTGATAGAAAGTCGATGTGAGGATTAAACCCTCCCCTTCCACATGAATGGGTA
OVRT1_0020_A10.b : CCGAGAACTGATAGAAGTTGAATGTGAGGATAAAACCCTCGCCTTCAAAATGAATGGGTA


20110601C-014259 : CATATCCAATGCAAACTACTCGGTGAAGAAGTGCATCTTCTTACTCTTCATCAACCATCG
                   ---------+---------+---------+---------+---------+---------+ 856
AMP01_0025_G03.b : CATATCCAATGCAAACTACTCGGTGAAGAAGTGCATCTTCTTACTtctcatcaaccatcg
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : CATATCCAATGCAAACTACTCGGTGAAGAAGTGCATCTTCTTACTcttcatcacccatcg
THY01_0001_G05.b : *ATATCCCATGCAAACTACTCCGCGGAAGAGTGCATCTTCTTAtccttcattaccattcg
OVRT1_0020_A10.b : CATATCCAATGCAAACTACTCGGTGAAGAAGTGCATCTTCTTACTCTTCATCAACCATCG


20110601C-014259 : TCTTGTAGAGTCAACCTCCTTNAGAAAAGCATAGAAACGGTGTATGCAGCTTATTTGCTT
                   ---------+---------+---------+---------+---------+---------+ 916
AMP01_0025_G03.b : tcttgtagagtcaaccctcttaagaaaagccataaaaaacggtgtatgcagccttattgc
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : tcttgtagagtcaaccccctaacaaaacccttacaaacggggtatgccgcttatttgcca
THY01_0001_G05.b : cctgtagagtcaacctccttaagaaagcactaaaacggtgaatgcagcttattgcctaaa
OVRT1_0020_A10.b : TCTTGTAGAGTCAACCTCCTTNAGAAAAGCATAGAAACGGTGTATGCAGCTTATTTGCTT


20110601C-014259 : AAAACACACATCCCGTCCTGTACCTCAGTTTAGAAATCAGCCCCCAGAACGTGNATGTCA
                   ---------+---------+---------+---------+---------+---------+ 976
AMP01_0025_G03.b : ccaaaaacacactccggtccctgaacctcatttaaaaaatcaccccccaaacgtggaagt
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : aaaacacacctccgttcctgtacccagtttaaaaatccccccccagaactgggaggtaac
THY01_0001_G05.b : acaacctccgttcctgtcctcaggttaaaaactcaccccacaactgg            
OVRT1_0020_A10.b : AAAACACACATCCCGTCCTGTACCTCAGTTTAGAAATCAGCCCCCAGAACGTGNATGTCA


20110601C-014259 : ACGTGCAACCCACGAAGCACGAGGTTCACTTCCTGCATGAAGACCGCATCCTGGAGCGTG
                   ---------+---------+---------+---------+---------+---------+ 1036
AMP01_0025_G03.b : tcacgggcaccccccaaacacaaggttccttccggctgaggaaccctcctggaacggtcc
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : ttgcccccccccgagcccgaggttctttcccgtgtgaaggaacctcctggaaggggtacc
THY01_0001_G05.b :                                                             
OVRT1_0020_A10.b : ACGTGCAACCCACGAAGCACGAGGTTCACTTCCTGCATGAAGACCGCATCCTGGAGCGTG


20110601C-014259 : TACAGCAGCCCATTGAGAACAGGCTCCTGGGCTC..........................
                   ---------+---------+---------+---------+---------+---------+ 1070
AMP01_0025_G03.b : caaccaattaagaacaggcccggggtcccatgccccagaacaaattccccaaat     
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : cccctattgaaagagggcccggggctccatgcctttggaccttttccccgaaatttgggc
THY01_0001_G05.b :                                                             
OVRT1_0020_A10.b : TACAGCAGCCCATTGAGAACAGGCTCCTGGGCTCaatgcctctagaactacttcacccaa


20110601C-014259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1070
AMP01_0025_G03.b :                                                             
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : aggcttttgggcccctgggggaaggtttatctcggggggaggaccctctcccttggagag
THY01_0001_G05.b :                                                             
OVRT1_0020_A10.b : attttttggcaggtctactggcccctctggggaagcggttaactcgcagcggaattcaac


20110601C-014259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1070
AMP01_0025_G03.b :                                                             
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : gggtaaggtttccctaccatggcccaaatttggcggaaaaaattttagctcttggccggt
THY01_0001_G05.b :                                                             
OVRT1_0020_A10.b : cctcctcctctggagtggccacagggtctttccacccaaaggtccaccaaattgcgggaa


20110601C-014259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1070
AMP01_0025_G03.b :                                                             
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : gaaatttttttcttacctcccttttttccgaaaataaattttttttgtgccccgcagaaa
THY01_0001_G05.b :                                                             
OVRT1_0020_A10.b : acaaactgtgtcccttctgaaccggggaaaatcttttctctttcccccgccttttcccca


20110601C-014259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1070
AMP01_0025_G03.b :                                                             
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b : aaaagttatctcccctttagggcgacaaactgtgggatacaaagagatta         
THY01_0001_G05.b :                                                             
OVRT1_0020_A10.b : agaaaaaataatttttttttgggcgccccccgaggaaagatgtattcccccctttcgggg


20110601C-014259 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1070
AMP01_0025_G03.b :                                                             
THY01_0112_D06.b :                                                             
OVRT1_0081_G03.b :                                                             
THY01_0001_G05.b :                                                             
OVRT1_0020_A10.b : gcgccccccctggtggggacaaaaaaatttttttctaagaggccctcccccc