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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-014275

Length: 879

Sequence:  [FASTA format sequence]
TGCGCGCTGG GGACCGCCCC CGGAAGTGGT GTCCGGCGAC GGCCCAGGCC CCGGAAGTGA
CATGCCCTCA GGGAGCCATG ATCCCTCCGA GGCTTTTCTC AGCCAGATCC TGGGCCGCGT
TGGAGGGCGT GCGGCGCTGG ACTCCGTGGG CACGAGCGGT GCCTGGGCCC GGCCGGCTGT
TTCCAGTGCA TGCTCCTTCC AGGCTGCTCT TGGTCGGCTG TGCCCACCGC GCCAAGCACC
AGGAGCCCTC CGGAAAGAAA CTGCTCTCTG AGAAGAAACT GAAACGGCAT TTTGTGGACC
AGCGCCGGGT GCTCGTCCGG GGCGGCCGCG GAGGCGACGG CGCGAGCTGC TTCCACAGTG
AGCCGCGGAA GGAGTTTGGA GGCCCCGACG GGGGCGACGG CGGCAGCGGC GGCCACGTCA
TCCTGAAAGT TGACCGGCAA GTCAAGTCCC TCTCCTCGGT CCTGTCTCGG TATCAGGGAT
GTGACGGAGG AGACGGCGGC AGGAAGAACT GCTCTGGGCG AAACGGCGCC CTCCTCTACG
TCCGGGTCCC CGTGGGCACG TTGGTGAAGG AGGGCGGCCA AGTCCTGGCT GACCTCTCGC
ACCCGGGCGC CGAGTACGTC GCCGCTCTGG GCGGGGCCGG AGGGAAGGGC AACCGCTTCT
TCCTGGCCAA TGACAACCGA GCGCCGGTGA CCTGTACCCC CGGGCAGCCC GGGCAGGAGC
GAGTCCTCCT CCTGGGAGCT CAGACGGTGG CCCACGCTGG GATGGTTGGA TTTCCCAACG
CGGGGAAGTC GTCGCTTCTC CGGGCCATTT TCGACGCCAG GCCTGCTGTG GCTTCGTACC
CGTTCACGAC CCTGACCCCC ACGTCGGGGT GGTTCACTA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		GTPBP5	GTP-binding protein 5 [Homo sapiens].	314	6e-86	O
		GTPBP10	GTP-binding protein 10 isoform 2 [Homo sapiens].	77.4	2e-14	O
		GTPBP10	GTP-binding protein 10 isoform 1 [Homo sapiens].	54.3	1e-07	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Gtpbp5	GTP binding protein 5 [Mus musculus].	318	3e-87	O
		Gtpbp5	GTP binding protein 5 [Mus musculus].	318	3e-87	O
		Gtpbp5	GTP binding protein 5 [Mus musculus].	318	3e-87	O
		Gtpbp5	GTP binding protein 5 [Mus musculus].	318	3e-87	O
		Gtpbp10	GTP-binding protein 10 [Mus musculus].	77.4	1e-14	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC477281	PREDICTED: similar to GTP binding protein 5 [Canis familiaris].	298	3e-81	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		GTPBP5	GTP-binding protein 5 [Bos taurus].	335	3e-92	O
		GTPBP10	GTP-binding protein 10 [Bos taurus].	77	2e-14	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20110601C-014275 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
BFLT1_0097_C12.b :              ggattacgttagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BFLT1_0055_A12.b : nncggttnnggnatttccgtatagcgttacgagtgxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0102_G04.b :                                                             
LVRM1_0191_B10.b :                                                             


20110601C-014275 : ..........................TGCGCGCTGGGGACCGCCCCCGGAAGTGGTGTCC
                   ---------+---------+---------+---------+---------+---------+ 34
BFLT1_0097_C12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxTGCGCGCTGGGGACCGCCCCCGGAAGTGGTGTCC
BFLT1_0055_A12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxTGCGCGCTGGGGACCGCCCCCGGAAGTGGTGTCC
OVR01_0102_G04.b :   nntttgctaggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0191_B10.b :                         ttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-014275 : GGCGACGGCCCAGGCCCCGGAAGTGACATGCCCTCAGGGAGCCATGATCCCTCCGAGGCT
                   ---------+---------+---------+---------+---------+---------+ 94
BFLT1_0097_C12.b : GGCGACGGCCCAGGCCCCGGAAGTGACATGCCCTCAGGGAGCCATGATCCCTCCGAGGCT
BFLT1_0055_A12.b : GGCGACGGCCCAGGCCCCGGAAGTGACATGCCCTCAGGGAGCCATGATCCCTCCGAGGCT
OVR01_0102_G04.b : xxxxxxxxxxxxxxxxxxxxxAGTGACATGCCCTCAGGGAGCCATGATCCCTCCGAGGCT
LVRM1_0191_B10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxtgcccttcagggaAGCCATGATCCCTCCAAGGCT


20110601C-014275 : TTTCTCAGCCAGATCCTGGGCCGCGTTGGAGGGCGTGCGGCGCTGGACTCCGTGGGCACG
                   ---------+---------+---------+---------+---------+---------+ 154
BFLT1_0097_C12.b : TTTCTCAGCCAGATCCTGGGCCGCGTTGGAGGGCGTGCGGCGCTGGACTCCGTGGGCACG
BFLT1_0055_A12.b : TTTCTCAGCCAGATCCTGGGCCGCGTTGGAGGGCGTGCGGCGCTGGACTCCGTGGGCACG
OVR01_0102_G04.b : TTTCTCAGCCAGATCCTGGGCCGCGTTGGAGGGCGTGCGGCGCTGGACTCCGTGGGCACG
LVRM1_0191_B10.b : TTTCTCAGCCGGATCCTGGGCCGCGTTGGAGGGCGTGCGGCGCTGGACTCCGTGGGCACG


20110601C-014275 : AGCGGTGCCTGGGCCCGGCCGGCTGTTTCCAGTGCATGCTCCTTCCAGGCTGCTCTTGGT
                   ---------+---------+---------+---------+---------+---------+ 214
BFLT1_0097_C12.b : AGCGGTGCCTGGGCCCGGCCGGCTGTTTCCAGTGCATGCTCCTTCCAGGCTGCTCTTGGT
BFLT1_0055_A12.b : AGCGGTGCCTGGGCCCGGCCGGCTGTTTCCAGTGCATGCTCCTTCCAGGCTGCTCTTGGT
OVR01_0102_G04.b : AGCGGTGCCTGGGCCCGGCCGGCTGTTTCCAGTGCATGCTCCTTCCAGGCTGCTCTTGGT
LVRM1_0191_B10.b : AGCGGTGCCTGGGCCCGGCCGGCTGTTTCCAGTGCATGCTCCTTCCAGGCTGCTCTTGGT


20110601C-014275 : CGGCTGTGCCCACCGCGCCAAGCACCAGGAGCCCTCCGGAAAGAAACTGCTCTCTGAGAA
                   ---------+---------+---------+---------+---------+---------+ 274
BFLT1_0097_C12.b : CGGCTGTGCCCACCGCGCCAAGCACCAGGAGCCCTCCGGAAAGAAACTGCTCTCTGAGAA
BFLT1_0055_A12.b : CGGCTGTGCCCACCGCGCCAAGCACCAGGAGCCCTCCGGAAAGAAACTGCTCTCTGAGAA
OVR01_0102_G04.b : CGGCTGTGCCCACCGCGCCAAGCACCAGGAGCCCTCCGGAAAGAAACTGCTCTCTGAGAA
LVRM1_0191_B10.b : CGGCTGTGCCCACCGCGCCAAGCACCAGGAGCCCTCCGGAAAGAAACTGCTCTCTGAGAA


20110601C-014275 : GAAACTGAAACGGCATTTTGTGGACCAGCGCCGGGTGCTCGTCCGGGGCGGCCGCGGAGG
                   ---------+---------+---------+---------+---------+---------+ 334
BFLT1_0097_C12.b : GAAACTGAAACGGCATTTTGTGGACCAGCGCCGGGTGCTCGTCCGGGGCGGCCGCGGAGG
BFLT1_0055_A12.b : GAAACTGAAACGGCATTTTGTGGACCAGCGCCGGGTGCTCGTCCGGGGCGGCCGCGGAGG
OVR01_0102_G04.b : GAAACTGAAACGGCATTTTGTGGACCAGCGCCGGGTGCTCGTCCGGGGCGGCCGCGGAGG
LVRM1_0191_B10.b : GAAACTGAAACGGCATTTTGTGGACCAGCGCCGGGTGCTCGTCCGGGGCGGCCGCGGAGG


20110601C-014275 : CGACGGCGCGAGCTGCTTCCACAGTGAGCCGCGGAAGGAGTTTGGAGGCCCCGACGGGGG
                   ---------+---------+---------+---------+---------+---------+ 394
BFLT1_0097_C12.b : CGACGGCGCGAGCTGCTTCCACAGTGAGCCGCGGAAGGAGTTTGGAGGCCCCGACGGGGG
BFLT1_0055_A12.b : CGACGGCGCGAGCTGCTTCCACAGTGAGCCGCGGAAGGAGTTTGGAGGCCCCGACGGGGG
OVR01_0102_G04.b : CGACGGCGCGAGCTGCTTCCACAGTGAGCCGCGGAAGGAGTTTGGAGGCCCCGACGGGGG
LVRM1_0191_B10.b : CGACGGCGCGAGCTGCTTCCACAGTGAGCCGCGGAAGGAGTTTGGAGGCCCCGACGGGGG


20110601C-014275 : CGACGGCGGCAGCGGCGGCCACGTCATCCTGAAAGTTGACCGGCAAGTCAAGTCCCTCTC
                   ---------+---------+---------+---------+---------+---------+ 454
BFLT1_0097_C12.b : CGACGGCGGCAGCGGCGGCCACGTCATCCTGAAAGTTGACCGGCAAGTCAAGTCCCTCTC
BFLT1_0055_A12.b : CGACGGCGGCAGCGGCGGCCACGTCATCCTGAAAGTTGACCGGCAAGTCAAGTCCCTCTC
OVR01_0102_G04.b : CGACGGCGGCAGCGGCGGCCACGTCATCCTGAAAGTTGACCGGCAAGTCAAGTCCCTCTC
LVRM1_0191_B10.b : CGACGGCGGCAGCGGCGGCCACGTCATCCTGAAAGTTGACCGGCAAGTCAAGTCCCTCTC


20110601C-014275 : CTCGGTCCTGTCTCGGTATCAGGGATGTGACGGAGGAGACGGCGGCAGGAAGAACTGCTC
                   ---------+---------+---------+---------+---------+---------+ 514
BFLT1_0097_C12.b : CTCGGTCCTGTCTCGGTATCAGGGATGTGACGGAGGAGACGGCGGCAGGAAGAACTGCTC
BFLT1_0055_A12.b : CTCGGTCCTGTCTCGGTATCAGGGATGTGACGGAGGAGACGGCGGCAGGAAGAACTGCTC
OVR01_0102_G04.b : CTCGGTCCTGTCTCGGTATCAGGGATGTGACGGAGAAGACGGCGGCAGGAAGAACTGCTC
LVRM1_0191_B10.b : CTCGGTCCTGTCTCGGTATCAGGGATGTGACGGAGAAGACGGCGGCAGGAAGAACTGCTC


20110601C-014275 : TGGGCGAAACGGCGCCCTCCTCTACGTCCGGGTCCCCGTGGGCACGTTGGTGAAGGAGGG
                   ---------+---------+---------+---------+---------+---------+ 574
BFLT1_0097_C12.b : TGGGCGAAACGGCGCCCTCCTCTACGTCCGGGTCCCCGTGGGCACGTTGGTGAAGGAGGG
BFLT1_0055_A12.b : TGGGCGAAACGGCGCCCTCCTCTACGTCCGGGTCCCCGTGGGCACGTTGGTGAAGGAGGG
OVR01_0102_G04.b : TGGGCGAAACGGCGCCCTCCTCTACGTCCGGGTCCCCGTGGGCACGTTGGTGAAGGAGGG
LVRM1_0191_B10.b : TGGGCGAAACGGCGCCCTCCTCTACGTCCGGGTCCCCGTGGGCACGTTGGTGAAGGAGGG


20110601C-014275 : CGGCCAAGTCCTGGCTGACCTCTCGCACCCGGGCGCCGAGTACGTCGCCGCTCTGGGCGG
                   ---------+---------+---------+---------+---------+---------+ 634
BFLT1_0097_C12.b : CGGCCAAGTCCTGGCTGACCTCTCGCACCCGGGCGCCGAGTACGTCGCCGCTCTGGGCGG
BFLT1_0055_A12.b : CGGCCAAGTCCTGGCTGACCTCTCGCACCCGGGCGCCGAGTACGTCGCCGCTCTGGGCGG
OVR01_0102_G04.b : CGGCCAAGTCCTGGCTGACCTCTCGCACCCGGGCGCCGAGTACGTCGCCGCTCTGGGCGG
LVRM1_0191_B10.b : CGGCCAAGTCCTGGCTGACCTCTCGCACCCGGGCGCCGAGTACGTCGCCGCTCTGGGCGG


20110601C-014275 : GGCCGGAGGGAAGGGCAACCGCTTCTTCCTGGCCAATGACAACCGAGCGCCGGTGACCTG
                   ---------+---------+---------+---------+---------+---------+ 694
BFLT1_0097_C12.b : GGCCGGAGGGAAGGGCAACCGCTTCTTCCTGGCCAATGACAACCGAGCGCCGGTGACCTG
BFLT1_0055_A12.b : GGCCGGAGGGAAGGGCAACCGCTTCTTCCTGGCCAATGACAACCGAGCGCCGGTGACCTG
OVR01_0102_G04.b : GGCCGGAGGGAAGGGCAACCGCTTCTTCCTGGCCAATGACAACCGAGCGCCGGTGACCTG
LVRM1_0191_B10.b : GGCCGGAGGGAAGGGCAACCGCTTTCTTCCTGGCAATGACAACCGAACGCCGGTGACCTG


20110601C-014275 : TACCCCCGGGCAGCCCGGGCAGGAGCGAGTCCTCCTCCTGGGAGCTCAGACGGTGGCCCA
                   ---------+---------+---------+---------+---------+---------+ 754
BFLT1_0097_C12.b : TACCCCCGGGCAGCCCGGGCAGGAGCGAGTCCTCCTCCCTGGAGCTCAGACGGTGGCCCA
BFLT1_0055_A12.b : TACCCCCGGGCAGCCCGGGCAGGAGCGAGTCCTCCTCCTGGAGCTNCAGACGGTGGCCCA
OVR01_0102_G04.b : TACCCCCGGGCAGCCCGGGCAGGAGCGAGTCCTCCTCCTGGAGCTCAAGACNGTGGCCCA
LVRM1_0191_B10.b : TACCCCCGGGCAGCCCGGGCAGGAacaaatcttccccctgggacttaagaacgtgccccc


20110601C-014275 : CGCTGGGATGGTTGGATTTCCCA*ACGCGGGGAAGTCGTCGCTTCTCCGGGCCATTTTCG
                   ---------+---------+---------+---------+---------+---------+ 813
BFLT1_0097_C12.b : CGCTGGGATGGTTGGATTTTCC**ACGCGGGGAAGTCGTCGCTTCTCCGGGC**ATTTCG
BFLT1_0055_A12.b : CGCTGGGATGGTTGGATTTCCCNNACGCGGGGAAGTCGTCGCTTCTCCGGGCCATTTTCG
OVR01_0102_G04.b : CGCTGGGATGGTTGGATTTTCCA*ACGCGGGGAAGTCGTCGCTTCTCCGGGCCCATTCGA
LVRM1_0191_B10.b : acctgggagggtgggatttccaaccccgggaaaacatacccttcccgggtg        


20110601C-014275 : ACGCCAGGCCTGCTGTGGCTTCGTACCCGTTCACGACCCTGA*CCCCCACGTCGGGGTGG
                   ---------+---------+---------+---------+---------+---------+ 872
BFLT1_0097_C12.b : AACGCAGGNCTGCTGTGGCTTCGTACCCCGTCACGACCCTGA*CCCCCACGTCGGGGTGG
BFLT1_0055_A12.b : ACGCCAGGGCTGCTGTGGCTTCGTACCCGTTCACGACCCTGA*CCCCCACGTCGGGGTGG
OVR01_0102_G04.b : ACGCCAGGCCTGCTGTGGCTTCCTACCCGTTCACAACCCTGAACCCCCCCGTCGGGGTGG
LVRM1_0191_B10.b :                                                             


20110601C-014275 : TTCACTA.....................................................
                   ---------+---------+---------+---------+---------+---------+ 879
BFLT1_0097_C12.b : TTCACTAcgaggaccacagcaggtagcagtggccgactccccggcatcgtccgcggagcc
BFLT1_0055_A12.b : Tcactacgaggaccaccagcagtagcagtggccgacatcccccgcatcgttcgcggaacc
OVR01_0102_G04.b : gttcactacgagggacccccaccagggtaccagtggggccaacattcccgggatctttcc
LVRM1_0191_B10.b :                                                             


20110601C-014275 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 879
BFLT1_0097_C12.b : cacagaaacagggctggggctcggctttctcgcacatcgagcgctgcccttcttctgtcg
BFLT1_0055_A12.b : cacaaaaacgggggctgggcttgcctttcctccgccattgaggggtgccccttcctcttg
OVR01_0102_G04.b : ggcggagcccacccaaaacaggggggcctggggccttcccctttccttccgcccaaattg
LVRM1_0191_B10.b :                                                             


20110601C-014275 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 879
BFLT1_0097_C12.b : tggtgacctttcggggcnaaccggtggtgcnctggacaactgaagcgaactggaaattca
BFLT1_0055_A12.b : gtcggggggaactttcgggccaaaacctgggggcccctggacaccctgaaggggaactgg
OVR01_0102_G04.b : aggggctggccccctttccctttttgtttcgggggggggaacctttttctggggcccaaa
LVRM1_0191_B10.b :                                                             


20110601C-014275 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 879
BFLT1_0097_C12.b : aaccaggctgtccggagcccccccctccgggcaaaaggtgacctcctcaggcaaaccgtt
BFLT1_0055_A12.b : aaatttaaaaaccagcccgtcccgggggccccccccgttcggccaaaaggtgaaattccc
OVR01_0102_G04.b : aaacccctgggggggtccacctggggacaaaaccttaaaagggcggaacccttgtgagaa
LVRM1_0191_B10.b :                                                             


20110601C-014275 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 879
BFLT1_0097_C12.b : gccccttgaggcccctgggctgggccatcctttttgtggcccggga             
BFLT1_0055_A12.b : tagggcaaaacggggtgcccaatggaggcccccctggggcgggggcccctttttttgggg
OVR01_0102_G04.b : tttttattaaaccctcgggccttgttttccccggaa                       
LVRM1_0191_B10.b :                                                             


20110601C-014275 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 879
BFLT1_0097_C12.b :                                                             
BFLT1_0055_A12.b : ttgccc                                                     
OVR01_0102_G04.b :                                                             
LVRM1_0191_B10.b :