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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-014441

Length: 1,115

Sequence:  [FASTA format sequence]
GTGGACAGGC CCTGTTGCAA GAGCTCGAAG ACTTGCCTCA CTCGTGCTGA ACTGGTAGAG
CACGTGGCCA GGGTGGCTCC TTAATCGGCA TAAATCAGAA GGGAATCAGA GAGCCGAGAA
GCCCTTTCAT CCACTCTGCT GCTTCTGTCT GCTTAGTAAC TGAATGCTGC ACTGCTTGCT
GTGGGACAGA GAACTTGTCA CATGACCGGG GGTGCGGTCC ATCGGGCAAA CGTCAGAGGC
TGGCCACGAT GCCTGTCGCC GTGGACGACA TCATGAAGCT GCTGTGCTCC ATCTCCGAGC
AGAGGAAAAT GCAGGCGGCC GTCAAGCACT CCGGGAGGGG TGCCCTGGTC ACCGGGGCCG
TGGCCTTCGT TGGTGGTTTG ATGGGCGGTC CCCCAGGACT AGCTGTTGGG GGGGCCGTCG
GGGGTCTGTT AGGTGCGTGG ATGACGAGTG GACAGTTTAA GCCCGTTCCT CAGATCATTA
TGGAGCTGCC CCCCGCCGAG CAGCAGAAGC TCTTTAATGA AGCCACTGCC ATCGTCAGGC
ACCTGGAGTG GACGGACGCC GTGCAGCTGA CCATGCTGGT CATGGGCAGC GAGGCCCTGC
AGCAGCAGCT CCTGGCAATG CTGGCCAACT ACATCACCAA GGAGCTCCGG GCAGAAGTGC
AGTACAACGA CTAGGTCTCC GCTCGGGGCA GCGGGGGGTC CATTTCGGTG ACTCCTCCAC
CTTGTGGAAG GTGACCCGGG ACTTGGGGGG CAGCCCACCC TCTCCGTATA TCGCCCTAAA
CTGGATCGAA ATCTCTCGCT GGAGAGGCGG CTGCTATGCT GTGTCATGTT CCAGAAATTA
TTTAAGGGGA CGCTGTGTTT GTGGCCGCGT GCACCTTCCA CCGAGAAGCG GGTGCACCGC
AAAGCTGTGC CTGCTGCCAC GTGGAGGCCG TTTTCTGAAT CCCCCCACCT CGCTCACACG
GAAGCTGGGG GAACAACCTC ACGTTCGGCC TTCTCATCTT GTGAAAATGA CGCCTCTCCA
CGCTCCCGTT GCAGGACCAG CACCTTCCTG GGGTCCAGGG TCTCAGGACC TCAGAGCTGG
CCCATGCTGG GATCATGTTT ACCTCTGAAT GCCCC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		C19orf12	hypothetical protein LOC83636 isoform 1 [Homo sapiens].	181	1e-45	O
		C19orf12	hypothetical protein LOC83636 isoform 2 [Homo sapiens].	176	3e-44	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		1600014C10Rik	hypothetical protein LOC72244 [Mus musculus].	159	4e-39	O
		1600014C10Rik	hypothetical protein LOC72244 [Mus musculus].	159	4e-39	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC484611	PREDICTED: similar to CG3740-PA [Canis familiaris].	181	1e-45	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		C18H19orf12	hypothetical protein LOC533209 [Bos taurus].	193	3e-49	O
		LOC786987	PREDICTED: hypothetical protein [Bos taurus].	106	3e-23	O
		LOC786987	PREDICTED: hypothetical protein isoform 1 [Bos taurus].	106	3e-23	O
		LOC782488	PREDICTED: hypothetical protein [Bos taurus].	102	5e-22	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100627784	PREDICTED: uncharacterized protein C19orf12 homolog [Sus scrofa].	134	7e-32	O

Alignment:      TOP

20110601C-014441 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SPL01_0022_A11.b : ttxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPLT1_0036_G03.b :                                                             
HTMT1_0042_H05.b :                                                             
PTG01_0079_D02.b :                                                             


20110601C-014441 : .........................GTGGACAGGCCCTGTTGCAAGAGCTCGAAGACTTG
                   ---------+---------+---------+---------+---------+---------+ 35
SPL01_0022_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxGTGGACAGGCCCTGTTGCAAGAGCTCGAAGACTTG
SPLT1_0036_G03.b :                                                             
HTMT1_0042_H05.b :                                                             
PTG01_0079_D02.b :                                                             


20110601C-014441 : CCTCACTCGTGCTGAACTGGTAGAGCACGTGGCCAGGGTGGCTCCTTAATCGGCATAAAT
                   ---------+---------+---------+---------+---------+---------+ 95
SPL01_0022_A11.b : CCTCACTCGTGCTGAACTGGTAGAGCACGTGGCCAGGGTGGCTCCTTAATCGGCATAAAT
SPLT1_0036_G03.b :                                                             
HTMT1_0042_H05.b :                                                             
PTG01_0079_D02.b :                                                          aaa


20110601C-014441 : CAGAAGGGAATCAGAGAGCCGAGAAGCCCTTTCATCCACTCTGCTGCTTCTGTCTGCTTA
                   ---------+---------+---------+---------+---------+---------+ 155
SPL01_0022_A11.b : CAGAAGGGAATCAGAGAGCCGAGAAGCCCTTTCATCCACTCTGCTGCTTCTGTCTGCTTA
SPLT1_0036_G03.b :                                                       nnnngg
HTMT1_0042_H05.b :                                                    nnccatctt
PTG01_0079_D02.b : tttgagtaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxggcg


20110601C-014441 : GTAACTGAATGCTGCACTGCTTGCTGTGGGACAGAGAACTTGTCACATGACCGGGGGTGC
                   ---------+---------+---------+---------+---------+---------+ 215
SPL01_0022_A11.b : GTAACTGAATGCTGCACTGCTTGCTGTGGGACAGAGAACTTGTCACATGACCGGGGGTGC
SPLT1_0036_G03.b : acggtacgaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgctgtg
HTMT1_0042_H05.b : tnnnnncgacggtagaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PTG01_0079_D02.b : ggagggcggggcctgcgcgccgggcggggcggctggtgtccccgcgcccgtcgccctgtg


20110601C-014441 : GGTCCATCGGGCAAACGTCAGAGGCTGGCCACGATGCCTGTCGCCGTGGACGACATCATG
                   ---------+---------+---------+---------+---------+---------+ 275
SPL01_0022_A11.b : GGTCCATCGGGCAAACGTCAGAGGCTGGCCACGATGCCTGTCGCCGTGGACGACATCATG
SPLT1_0036_G03.b : acctcgcagcgccgcctccgcAGGCTGGCCACGATGCCTGTCGCCGTGGACGACATCATG
HTMT1_0042_H05.b : tctccttcggaacgcttttcaAGGCTGGCCACGATGCCTGTCGCCGTGGACGACATCATG
PTG01_0079_D02.b : acctcgcagcgccgcctccgcaGGCTGGCCACGATGCCTGTCGCCGTGGACGACATCATG


20110601C-014441 : AAGCTGCTGTGCTCCATCTCCGAGCAGAGGAAAATGCAGGCGGCCGTCAAGCACTCCGGG
                   ---------+---------+---------+---------+---------+---------+ 335
SPL01_0022_A11.b : AAGCTGCTGTGCTCCATCTCCGAGCAGAGGAAAGTGCAGGCGGCCGTCAAGCACTCCGGG
SPLT1_0036_G03.b : AAGCTGCTGTGCTCCATCTCCGAGCAGAGGAAAATGCAGGCGGCCGTCAAGCACTCCGGG
HTMT1_0042_H05.b : AAGCTGCTGTGCTCCATCTCCGAGCAGAGGAAAATGCAGGCGGCCGTCAAGCACTCCGGG
PTG01_0079_D02.b : AAGCTGCTGTGCTCCATCTCCGAGCAGAGGAAAATGCAGGCGGCCGTCAAGCACTCCGGG


20110601C-014441 : AGGGGTGCCCTGGTCACCGGGGCCGTGGCCTTCGTTGGTGGTTTGATGGGCGGTCCCCCA
                   ---------+---------+---------+---------+---------+---------+ 395
SPL01_0022_A11.b : AGGGGTGCCCTGGTCACCGGGGCCGTGGCCTTCGTTGGTGGTTTGATGGGCGGTCCCCCA
SPLT1_0036_G03.b : AGGGGTGCCCTGGTCACCGGGGCCGTGGCCTTCGTTGGTGGTTTGATGGGCGGTCCCCCA
HTMT1_0042_H05.b : AGGGGTGCCCTGGTCACCGGGGCCGTGGCCTTCGTTGGTGGTTTGATGGGCGGTCCCCCA
PTG01_0079_D02.b : AGGGGTGCCCTGGTCACCGGGGCCGTGGCCTTCGTTGGTGGTTTGATGGGCGGTCCCCCA


20110601C-014441 : GGACTAGCTGTTGGGGGGGCCGTCGGGGGTCTGTTAGGTGCGTGGATGACGAGTGGACAG
                   ---------+---------+---------+---------+---------+---------+ 455
SPL01_0022_A11.b : GGACTAGCTGTGGGGGGGGCCGTCGGGGGTCTGTTAGGTGCGTGGATGACGAGTGGACAG
SPLT1_0036_G03.b : GGACTAGCTGTTGGGGGGGCCGTCGGGGGTCTGTTAGGTGCGTGGATGACGAGTGGACAG
HTMT1_0042_H05.b : GGACTAGCTGTTGGGGGGGCCGTCGGGGGTCTGTTAGGTGCGTGGATGACGAGTGGACAG
PTG01_0079_D02.b : GGACTAGCTGTGGGGGGGGCCGTCGGGGGTCTGTTAGGTGCGTGGATGACGAGTGGACAG


20110601C-014441 : TTTAAGCCCGTTCCTCAGATCATTATGGAGCTGCCCCCCGCCGAGCAGCAGAAGCTCTTT
                   ---------+---------+---------+---------+---------+---------+ 515
SPL01_0022_A11.b : TTTAAGCCCGTTCCTCAGATCATTATGGAGCTGCCCCCCGCCGAGCAGCAGAAGCTCTTT
SPLT1_0036_G03.b : TTTAAGCCCGTTCCTCAGATCATTATGGAGCTGCCCCCCGCCGAGCAGCAGAAGCTCTTT
HTMT1_0042_H05.b : TTTAAGCCCGTTCCTCAGATCATTATGGAGCTGCCCCCCGCCGAGCAGCAGAAGCTCTTT
PTG01_0079_D02.b : TTTAAGCCCGTTCCTCAGATCATTATGGAGCTGCCCCCCGCCGAGCAGCAGAAGCTCTTT


20110601C-014441 : AATGAAGCCACTGCCATCGTCAGGCACCTGGAGTGGACGGACGCCGTGCAGCTGACCATG
                   ---------+---------+---------+---------+---------+---------+ 575
SPL01_0022_A11.b : AATGAAGCCACTGCCATCGTCAGGCACCTGGAGTGGACGGACGCCGTGCAGCTGACCATG
SPLT1_0036_G03.b : AATGAAGCCACTGCCATCGTCAGGCACCTGGAGTGGACGGACGCCGTGCAGCTGACCATG
HTMT1_0042_H05.b : AATGAAGCCACTGCCATCGTCAGGCACCTGGAGTGGACGGACGCCGTGCAGCTGACCATG
PTG01_0079_D02.b : AATGAAGCCACTGCCATCGTCAGGCACCTGGAGTGGACGGACGCCGTGCAGCTGACCATG


20110601C-014441 : CTGGTCATGGGCAGCGAGGCCCTGCAGCAGCAGCTCCTGGCAATGCTGGCCAACTACATC
                   ---------+---------+---------+---------+---------+---------+ 635
SPL01_0022_A11.b : CTGGTCATGGGCAGCGAGGCCCTGCAGCAGCAGCTCCTGGCAATGCTGGCCAACTACATC
SPLT1_0036_G03.b : CTGGTCATGGGCAGCGAGGCCCTGCAGCAGCAGCTCCTGGCAATGCTGGCCAACTACATC
HTMT1_0042_H05.b : CTGGTCATGGGCAGCGAGGCCCTGCAGCAGCAGCTCCTGGCAATGCTGGCCAACTACATC
PTG01_0079_D02.b : CTGGTCATGGGCAGCGAGGCCCTGCAGCAGCAGCTCCTGGCAATGCTGGCCAACTACATC


20110601C-014441 : ACCAAGGAGCTCCGGGCAGAAGTGCAGTACAACGACTAGGTCTCCGCTCGGGGCAGCGGG
                   ---------+---------+---------+---------+---------+---------+ 695
SPL01_0022_A11.b : ACCAAGGAGCTCCGGGCAGAAGTGCAGTACAACGACTAGGTCTCCGCTCGGGGCAGCGGG
SPLT1_0036_G03.b : ACCAAGGAGCTCCGGGCAGAAGTGCAGTACAACGACTAGGTCTCCGCTCGGGGCAGCGGG
HTMT1_0042_H05.b : ACCAAGGAGCTCCGGGCAGAAGTGCAGTACAACGACTAGGTCTCCGCTCGGGGCAGCGGG
PTG01_0079_D02.b : ACCAAGGAGCTCCGGGCAGAAGTGCAGTACAACGACTAGGTCTCCGCTCGGGGCAGCGGG


20110601C-014441 : GGGTCCATTTCGGTGACTCCTCCACCTTGTGGAAGGTGACCCGGGACTTGGGGGGCAGCC
                   ---------+---------+---------+---------+---------+---------+ 755
SPL01_0022_A11.b : GGGTCCATTTCGGTGACTCCTCCACCTTGTGGAAGGTGACCCGGGACCTGGGGGGCA  
SPLT1_0036_G03.b : GGGTCCATTTCGGTGACTCCTCCACCTTGTGGAAGGTGACCCGGGACTTGGGGGGCAGCC
HTMT1_0042_H05.b : GGGTCCATTTCGGTGACTCCTCCACCTTGTGGAAGGTGACCCGGGACTTGGGGGGCAGCC
PTG01_0079_D02.b : GGGTCCATTTCGGTGACTCCTCCACCTTGTGGAAGGTGACCCGGGACCTGGGGGGCAGCC


20110601C-014441 : CACCCTCTCCGTATATCGCCCTAAACTGGATCGAAATCTCTCGCTGGAGAGGCGGCTGCT
                   ---------+---------+---------+---------+---------+---------+ 815
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : CACCCTCTCCGTATATCGCCCTAAACTGGATCGAAATCTCTCGCTGGAGAGGCGGCTGCT
HTMT1_0042_H05.b : CACCCTCTCCGTATATCGCCCTAAACTGGATCGAAATCTCTCGCTGGAGAGGCGGCTGCT
PTG01_0079_D02.b : CACCCTCTCCGTATATCGCCCTAAACTGGATCGAAATCTCTCGCTGGAGAGGCGGCTGCT


20110601C-014441 : ATGCTGTGTCATGTTCCAGAAATTATTTAAGGGGACGCTGTGTTTGTGGCCGCGTGCACC
                   ---------+---------+---------+---------+---------+---------+ 875
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : ATGCTGTGTCATGTTCCAGAAATTATTTAAGGGGACGCTGTGTTTGTGGCCGCGTGCACC
HTMT1_0042_H05.b : ATGCTGTGTCATGTTCCAGAAATTATTTAAGGGGACGCTGTGTTTGTGGCCGCGTGCACC
PTG01_0079_D02.b : ATGCTGTGTCATGTTCCAGAAATTATTTAAGGG*ACGCTGTGTTTGTGGCCGCGTGCACC


20110601C-014441 : TTCCACCGAGAAGCGGGTGCACCGCAAAGCTGTGCCTGCTGCCACGTGGAGGCCGTTTTC
                   ---------+---------+---------+---------+---------+---------+ 935
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : TTC*ACCGAGAAGCGGGTGCANCGCAAAGCTGTGCCTGCTGCCACGTGGAAGCCGTTTtc
HTMT1_0042_H05.b : TTCCACCGAGAAGCGGGTGCACCGCANAGCTGTGCCTGCTGCCACGTGGAGGCCGTTTTC
PTG01_0079_D02.b : TTCCACCGAGAAGCGGGTGCACCGCCAAACTGTGGCTGCTGCCACGTGGAGGCGGTTTtc


20110601C-014441 : TGAATCCCCCCACCTCGCTCACACGGAAGCTGGGGGAACAACCTCACGTTCGGCCTTCTC
                   ---------+---------+---------+---------+---------+---------+ 995
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : tgaatccccccacctcgcctacacggaagctgggggaacaaccttcagttcgggctttct
HTMT1_0042_H05.b : TGAATCCCCCCACCTCGCTCACACGGAAGCTGGGGGAACAACCTCACGTTCGGCCTTCTC
PTG01_0079_D02.b : tgaaatccccccacctcgttcacacggaagctgggggaacaacctcacgttcgggcttct


20110601C-014441 : ATCTTGTGAAAATGACGCCTCTCCACGCTCCCGTTGCAGGACCAGCACCTTCCTGGGGTC
                   ---------+---------+---------+---------+---------+---------+ 1055
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : ctctgtgaaaatgacgcctctcacgctccctttgcagggacaccactttttggggttcag
HTMT1_0042_H05.b : ATCTTGTGAAAATGACGCCTCTCCACGCTCCCGTTGCAGGACCAGCACCTTCCTGGGGTC
PTG01_0079_D02.b : catctttgggaaatgacgcctctccacgcctccgttgcaggaacaccacttccttggggt


20110601C-014441 : CAGGGTCTCAGGACCTCAGAGCTGGCCCATGCTGGGATCATGTTTACCTCTGAATGCCCC
                   ---------+---------+---------+---------+---------+---------+ 1115
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : ggtctcaggacctcaaactggccaggctgaaatctgtttaccctgaaagcccctttgggg
HTMT1_0042_H05.b : CAGGGTCTCAGGACCTCAGAGCTGGCCCATGCTGGGATCATGTTTACCTCTGAATGCCCC
PTG01_0079_D02.b : ccaggggcctcaggacctcaaaactgggcccaggcgggaaccaggtttcccctgaaggcc


20110601C-014441 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1115
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : gggcaggaacttctaatgccctcagagggggcacttgccttccaaataaaccacaaattg
HTMT1_0042_H05.b : ttctggtgggcagtgaactctgagtgggctcaggagggggcagtccgcctgctgaatgaa
PTG01_0079_D02.b : ccttctggggggccaggacttccgaaaggcctccggaagggccattcggcctgctaattg


20110601C-014441 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1115
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : gtgggcccccccctttccataatcttaggccagggcttaccctccggaattgggttcttt
HTMT1_0042_H05.b : gcccacaatggttggtggcacagcccccttccccagtagctctaggctcaagctcctaac
PTG01_0079_D02.b : aacccccaaggttgggggccccaccccttccccaaaaaccttagggtcagggctttcccc


20110601C-014441 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1115
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : tttaaaaacaacccctcttggattcgttttaaaataaaatttcaaaaaaagaaccccttt
HTMT1_0042_H05.b : ctcccaggaattgggttctttttttgaaaatcccggtccttcctggagtcggccttggaa
PTG01_0079_D02.b : ctcaggattggcgtcccttttaaaaaaccaaacccctttggaattcggcttgtaataaaa


20110601C-014441 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1115
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : gaaaggtagccccaaaatctcgaaaaagtgcccccgaattttttaaggtttttctttttt
HTMT1_0042_H05.b : ataaaaaatttcaaaaaaaaggatggcctcttttggaaggggaaggctcttaaccttcct
PTG01_0079_D02.b : attttcgaaaaagaggtgtcctttctaaagggggggccctcaactcccccagaaaggggc


20110601C-014441 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1115
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : caaaccctttaaatttttccccgcaaaaattttggccccnaaaaaannaaagngaaaaaa
HTMT1_0042_H05.b : tggaaaggtggccccccgggaatcccttaaggactttttggcttgttttcaaaaccaacc
PTG01_0079_D02.b : cccccgaaatccctaaggggttttttgtttttcaaaacccctttgtaagggtcccccggc


20110601C-014441 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1115
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b : aannannnnnccccccccctctcccccccggctgtgtgagtaaaaaaaaaagaatt   
HTMT1_0042_H05.b : ttgaaaaaggtcttcccccggaaaaagtgtttggaaaactcttctccccccnnannaaaa
PTG01_0079_D02.b : aaaaggttttcgaaaaaaaaaaaaaaaaagcattggttcatcgggcgggcccttaataat


20110601C-014441 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1115
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b :                                                             
HTMT1_0042_H05.b : aaaaaaaaanaannnaannnnnnnnnnnnnnnnnnnaaaannncccccccccccccccgt
PTG01_0079_D02.b : cccgggggcatttcgacccctttttttaagaggcccaaggagaatataaaggcggcgcgg


20110601C-014441 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1115
SPL01_0022_A11.b :                                                             
SPLT1_0036_G03.b :                                                             
HTMT1_0042_H05.b : ggggggggggaccaaagaaaaaaagaggaggccacactttgtttt              
PTG01_0079_D02.b : tttataaggaggagaaagtg