[Help]

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-014490

Length: 944

Sequence:  [FASTA format sequence]
GGTCAGGAGG CGGCTCCCGC TTCCCCAGAG GGAGGAGGAA GCCGAGAGGA GATGGGTCCC
CGCCGCTGAG CCGCCCACCG CCGGGAAGGA AAGGCTGACG TTCAGGCGAC AAGGTTAGCA
TTACACGAAG GTTTCAACCT GGATCCAGAG AAGACTCCCC AACAACTCCA AGGCTGGTGA
GCAAACAGGT GCTGGTACCT ACAGAGAAAG CCCGGAGCTC ACTCATTGCT TTCTTGCCAA
CTTTGGAGTT TGAGGGCTTG TGTGTGCCCC CTGCCCTGCA CAGCCATGGC CCTGGTCAGC
ATCAACCAGC TGCCCGAGAG CATCCTGCTG GAGGTGTTCA CGCACCTGCC CGCCCGCCAG
CTGCTGCTGA ACTGCCGCCC CGTCTGCAGC CTCTGGCGTG ACCTCATTGA CCTCGTGACC
CTCTGGAAGC GCAAATGCCT ATGTGAGGGC TTCGTCGCTG AGGACTGGGA CCAGCCCGTG
GCCGACTGGA AGGTCTTCTA CTTTCTGTGC AGCCTCCGCA GGAACCTCCT GCGCAACCCG
TGTGCTGAAG ATGATATGAT GTCCTGGAAA ATTGACTCCA ATGGGGGGAA CCACTGGAAG
GTAGAGAGCC TCCCTGGAGC CCACGGCACA GATTTTCCCG ACTCCAAAGT CAAGAAGTAC
TTTGTCACAT CTTACGGCAT GTGCCTCAAG TCCCAGCTGA TAGACCTTAA AGCTGAGGGC
TACTGGGAAG AGCTGCTGGA CAAGTTCCGG CCAGACATCG TGGTCAAGGA CTGGTTCGCC
GCCAGAGCAG ACTGTGGTTG CACCTACCAC ATCCGAGTAC AGCTGGGCTC CGCTGACTAC
ATCGTCCTGG CCTCCTTCGA GCCCCCCGCT GTGACCATCC CTCAGTGGAA CGATGCCCAG
TGGAAGAAGT CTCCCACACC TTCTCGGGAT ACCCTCCAGG TGTC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		FBXO6	F-box only protein 6 [Homo sapiens].	373	e-104	O
		FBXO44	F-box only protein 44 isoform 1 [Homo sapiens].	301	2e-84	O
		FBXO44	F-box only protein 44 isoform 1 [Homo sapiens].	301	2e-84	O
		FBXO2	F-box only protein 2 [Homo sapiens].	200	2e-52	O
		FBXO44	F-box only protein 44 isoform 2 [Homo sapiens].	190	1e-49	O
		FBXO44	F-box only protein 44 isoform 2 [Homo sapiens].	190	1e-49	O
		FBXO27	F-box only protein 27 [Homo sapiens].	134	9e-32	O
		FBXO17	F-box only protein 17 isoform 2 [Homo sapiens].	131	8e-31	O
		FBXO17	F-box only protein 17 isoform 1 [Homo sapiens].	131	8e-31	O
		NCCRP1	non-specific cytotoxic cell receptor protein 1 homolog [Homo sapiens].	61.6	4e-10	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Fbxo6	F-box only protein 6 [Mus musculus].	332	8e-94	O
		Fbxo6	F-box only protein 6 [Mus musculus].	332	8e-94	O
		Fbxo6	F-box only protein 6 [Mus musculus].	332	8e-94	O
		Fbxo6	F-box only protein 6 [Mus musculus].	332	8e-94	O
		Fbxo6	F-box only protein 6 [Mus musculus].	332	8e-94	O
		Fbxo44	F-box only protein 44 isoform 1 [Mus musculus].	301	2e-84	O
		Fbxo44	F-box only protein 44 isoform 1 [Mus musculus].	301	2e-84	O
		Fbxo2	F-box only protein 2 [Mus musculus].	196	4e-51	O
		Fbxo44	F-box only protein 44 isoform 2 [Mus musculus].	189	2e-48	O
		Fbxo17	F-box only protein 17 [Mus musculus].	126	2e-29	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC487444	PREDICTED: similar to F-box only protein 6 (F-box/G-domain protein 2) [Canis familiaris].	402	e-114	O
		LOC478231	PREDICTED: similar to F-box only protein 2 [Canis familiaris].	195	1e-50
		LOC487445	PREDICTED: similar to F-box protein 44 isoform 1 [Canis familiaris].	165	5e-41	O
		LOC484516	PREDICTED: similar to F-box protein FBG4 isoform 1 [Canis familiaris].	129	4e-30	O
		LOC484515	PREDICTED: similar to F-box protein 27 [Canis familiaris].	128	9e-30
		LOC612546	PREDICTED: similar to nonspecific cytotoxic cell receptor protein 1 [Canis familiaris].	63.9	9e-11	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		FBXO6	F-box only protein 6 [Bos taurus].	394	e-112	O
		FBXO44	F-box only protein 44 [Bos taurus].	299	8e-84	O
		FBXO2	F-box only protein 2 [Bos taurus].	199	4e-52	O
		LOC508086	PREDICTED: F-box protein 27-like [Bos taurus].	91.7	9e-19	O
		LOC508086	PREDICTED: F-box protein 27-like [Bos taurus].	91.7	9e-19	O
		LOC789309	PREDICTED: F-box protein-like [Bos taurus].	88.6	7e-18	O
		LOC789309	PREDICTED: F-box protein-like [Bos taurus].	88.6	7e-18	O
		LOC530285	PREDICTED: F-box protein 27-like [Bos taurus].	83.6	2e-16	O
		LOC530285	PREDICTED: F-box protein 27-like [Bos taurus].	82.8	4e-16	O
		LOC529686	PREDICTED: F-box protein 27-like [Bos taurus].	73.6	2e-13	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100511640	PREDICTED: f-box only protein 2-like [Sus scrofa].	205	3e-54	O
		LOC100519028	PREDICTED: f-box only protein 17-like [Sus scrofa].	127	7e-30	O
		LOC100621822	PREDICTED: f-box only protein 27-like [Sus scrofa].	93.2	2e-19
		LOC100518491	PREDICTED: f-box only protein 27-like [Sus scrofa].	83.6	1e-16	O
		LOC100521510	PREDICTED: f-box only protein 27-like [Sus scrofa].	72	4e-13	O
		LOC100621317	PREDICTED: f-box only protein 27-like [Sus scrofa].	69.3	3e-12	O
		LOC100628094	PREDICTED: non-specific cytotoxic cell receptor protein 1 homolog [Sus scrofa].	63.5	7e-11	O

Alignment:      TOP

20110601C-014490 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0084_F04.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PTG01_0024_G12.b :   nggctttttaaaatgagtaagcagcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PTG01_0017_A08.b :                                                        nccgg
OVRM1_0002_D08.b :                                   nagtttgtcxxxxxxxxxxxxxxxxx


20110601C-014490 : .GGTCAGGAGGCGGCTCCCGCTTCCCCAGAGGGAGGAGGAAGCCGAGAGGAGATGGGTCC
                   ---------+---------+---------+---------+---------+---------+ 59
OVRM1_0084_F04.b : xGGTCAGGAGGCGGCTCCCGCTTCCCCAGAGGGAGGAGGAAGCCGAGAGGAGATGGGTCC
PTG01_0024_G12.b : xxxxxxxGAGGCGGCTCCCGCTTCCCCAGAGGGAGGAGGAAGCCGAGAGGAGATGGGTCC
PTG01_0017_A08.b : ttttnnnnnggactxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0002_D08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgagagtggccggcgtcgccgaggtcgca


20110601C-014490 : CCGCCGCTGAGCCGCCCACCGCCGGGAAGGAAAGGCTGACGTTCAGGCGACAAGGTTAGC
                   ---------+---------+---------+---------+---------+---------+ 119
OVRM1_0084_F04.b : CCGCCGCTGAGCCGCCCACCGCCGGGAAGGAAAGGCTGACGTTCAGGCGACAAGGTTAGC
PTG01_0024_G12.b : CCGCCGCTGAGCCGCCCACCGCCGGGAAGGAAAGGCTGACGTTCAGGCGACAAGGTTAGC
PTG01_0017_A08.b : xxgagagtggccggcgtcgccgaggtcgcaggtccaggccgaCCCCGAGCTCAGGTTAGC
OVRM1_0002_D08.b : ggtccaggccgaccccgagctcaggtcccgtcgagcgccccgccccgcgcccAGGTTAGC


20110601C-014490 : ATTACACGAAGGTTTCAACCTGGATCCAGAGAAGACTCCCCAACAACTCCAAGGCTGGTG
                   ---------+---------+---------+---------+---------+---------+ 179
OVRM1_0084_F04.b : ATTACACGAAGGTTTCAACCTGGATCCAGAGAAGACTCCCCAACAACTCCAAGGCTGGTG
PTG01_0024_G12.b : ATTACACGAAGGTTTCAACCTGGATCCAGAGAAGACTCCCCAACAACTCCAAGGCTGGTG
PTG01_0017_A08.b : ATTACACGAAGGTTTCAACCTGGATCCAGAGAAGACTCCCCAACAACTCCAAGGCTGGTG
OVRM1_0002_D08.b : ATTACACGAAGGTTTCAACCTGGATCCAGAGAAGACTCCCCAACAACTCCAAGGCTGGTG


20110601C-014490 : AGCAAACAGGTGCTGGTACCTACAGAGAAAGCCCGGAGCTCACTCATTGCTTTCTTGCCA
                   ---------+---------+---------+---------+---------+---------+ 239
OVRM1_0084_F04.b : AGCAAACAGGTGCTGGTACCTACAGAGAAAGCCCGGAGCTCACTCATTGCTTTCTTGCCA
PTG01_0024_G12.b : AGCAAACAGGTGCTGGTACCTACAGAGAAAGCCCGGAGCTCACTCATTGCTTTCTTGCCA
PTG01_0017_A08.b : AGCAAACAGGTGCTGGTACCTACAGAGAAAGCCCGGAGCTCACTCATTGCTTTCTTGCCA
OVRM1_0002_D08.b : AGCAAACAGGTGCTGGTACCTACAGAGAAAGCCCGGAGCTCACTCATTGCTTTCTTGCCA


20110601C-014490 : ACTTTGGAGTTTGAGGGCTTGTGTGTGCCCCCTGCCCTGCACAGCCATGGCCCTGGTCAG
                   ---------+---------+---------+---------+---------+---------+ 299
OVRM1_0084_F04.b : ACTTTGGAGTTTGAGGGCTTGTGTGTGCCCCCTGCCCTGCACAGCCATGGCCCTGGTCAG
PTG01_0024_G12.b : ACTTTGGAGTTTGAGGGCTTGTGTGTGCCCCCTGCCCTGCACAGCCATGGCCCTGGTCAG
PTG01_0017_A08.b : ACTTTGGAGTTTGAGGGCTTGTGTGTGCCCCCTGCCCTGCACAGCCATGGCCCTGGTCAG
OVRM1_0002_D08.b : ACTTTGGAGTTTGAGGGCTTGTGTGTGCCCCCTGCCCTGCACAGCCATGGCCCTGGTCAG


20110601C-014490 : CATCAACCAGCTGCCCGAGAGCATCCTGCTGGAGGTGTTCACGCACCTGCCCGCCCGCCA
                   ---------+---------+---------+---------+---------+---------+ 359
OVRM1_0084_F04.b : CATCAACCAGCTGCCCGAGAGCATCCTGCTGGAGGTGTTCACGCACCTGCCCGCCCGCCA
PTG01_0024_G12.b : CATCAACCAGCTGCCCGAGAGCATCCTGCTGGAGGTGTTCACGCACCTGCCCGCCCGCCA
PTG01_0017_A08.b : CATCAACCAGCTGCCCGAGAGCATCCTGCTGGAGGTGTTCACGCACCTGCCCGCCCGCCA
OVRM1_0002_D08.b : CATCAACCAGCTGCCCGAGAGCATCCTGCTGGAGGTGTTCACGCACCTGCCCGCCCGCCA


20110601C-014490 : GCTGCTGCTGAACTGCCGCCCCGTCTGCAGCCTCTGGCGTGACCTCATTGACCTCGTGAC
                   ---------+---------+---------+---------+---------+---------+ 419
OVRM1_0084_F04.b : GCTGCTGCTGAACTGCCGCCCCGTCTGCAGCCTCTGGCGTGACCTCATTGACCTCGTGAC
PTG01_0024_G12.b : GCTGCTGCTGAACTGCCGCCCCGTCTGCAGCCTCTGGCGTGACCTCATTGACCTCGTGAC
PTG01_0017_A08.b : GCTGCTGCTGAACTGCCGCCCCGTCTGCAGCCTCTGGCGTGACCTCATTGACCTCGTGAC
OVRM1_0002_D08.b : GCTGCTGCTGAACTGCCGCCCCGTCTGCAGCCTCTGGCGTGACCTCATTGACCTCGTGAC


20110601C-014490 : CCTCTGGAAGCGCAAATGCCTATGTGAGGGCTTCGTCGCTGAGGACTGGGACCAGCCCGT
                   ---------+---------+---------+---------+---------+---------+ 479
OVRM1_0084_F04.b : CCTCTGGAAGCGCAAATGCCTATGTGAGGGCTTCGTCGCTGAGGACTGGGACCAGCCCGT
PTG01_0024_G12.b : CCTCTGGAAGCGCAAATGCCTATGTGAGGGCTTCGTCGCTGAGGACTGGGACCAGCCCGT
PTG01_0017_A08.b : CCTCTGGAAGCGCAAATGCCTATGTGAGGGCTTCGTCGCTGAGGACTGGGACCAGCCCGT
OVRM1_0002_D08.b : CCTCTGGAAGCGCAAATGCCTATGTGAGGGCTTCGTCGCTGAGGACTGGGACCAGCCCGT


20110601C-014490 : GGCCGACTGGAAGGTCTTCTACTTTCTGTGCAGCCTCCGCAGGAACCTCCTGCGCAACCC
                   ---------+---------+---------+---------+---------+---------+ 539
OVRM1_0084_F04.b : GGCCGACTGGAAGGTCTTTTACTTTCTGTGCAGCCTCCGCAGGAACCTCCTGCGCAACCC
PTG01_0024_G12.b : GGCCGACTGGAAGGTCTTCTACTTTCTGTGCAGCCTCCGCAGGAACCTCCTGCGCAACCC
PTG01_0017_A08.b : GGCCGACTGGAAGGTCTTCTACTTTCTGTGCAGCCTCCGTAGGAACCTCCTGCGCAACCC
OVRM1_0002_D08.b : GGCCGACTGGAAGGTCTTTTACTTTCTGTGCAGCCTCCGCAGGAACCTCCTGCGCAACCC


20110601C-014490 : GTGTGCTGAAGATGATATGATGTCCTGGAAAATTGACTCCAATGGGGGGAACCACTGGAA
                   ---------+---------+---------+---------+---------+---------+ 599
OVRM1_0084_F04.b : ATGTGCTGAAGATGATATGACGTCCTGGAAAATTGACTCCAATGGGGGGAACCACTGGAA
PTG01_0024_G12.b : GTGTGCTGAAGATGATATGATGTCCTGGAAAATTGACTCCAATGGGGGGAACCACTGGAA
PTG01_0017_A08.b : GTGTGCTGAAGATGATATGATGTCCTGGAAAATTGACTCCAATGGGGGGAACCACTGGAA
OVRM1_0002_D08.b : ATGTGCTGAAGATGATATGACGTCCTGGAAAATTGACTCCAATGGGGGGAACCACTGGAA


20110601C-014490 : GGTAGAGAGCCTCCCTGGAGCCCACGGCACAGATTTTCCCGACTCCAAAGTCAAGAAGTA
                   ---------+---------+---------+---------+---------+---------+ 659
OVRM1_0084_F04.b : GGTAGAGAGCCTCCCTGGAGCCCACGGCACAGATTTTCCTGACTCCAAAGTCAAGAAGTA
PTG01_0024_G12.b : GGTAGAGAGCCTCCCTGGAGCCCACGGCACAGATTTTCCCGACTCCCAAAGTCAGAAGTA
PTG01_0017_A08.b : GGTAGAGAGCCTCCCTGGAGCCCACGGCACAGATTTTCCCGACTCCAAAGTCAAGAAGTA
OVRM1_0002_D08.b : GGTAGAGAGCCTCCCTGGAGCCCACGGCACAGATTTTCCTGACTCCAAAGTCAAGAAGTA


20110601C-014490 : CTTTGTCACATCTTACGGCATGTGCCTCAAGTCCCAGCTGATAGACCTTAAAGCTGAGGG
                   ---------+---------+---------+---------+---------+---------+ 719
OVRM1_0084_F04.b : CTTTGTCACATCTTACGGCATGTGCCTCAAGTCCCAGCTGATAGACCTTACAGCTGAGGG
PTG01_0024_G12.b : CTTTGTCACATCTTACGGCATGTGCCTCAAGTCCCAGCTGATAGACCTTAAAGCTGAGGG
PTG01_0017_A08.b : CTTTGTCACATCTTACGGCATGTGCCTCAAGTCCCAGCTGATAGACCTTAAAGCTGAGGG
OVRM1_0002_D08.b : CTTTGTCACATCTTACGGCATGTGCCTCAAGTCCCAGCTGATAGACCTTAAAGCTGAAGG


20110601C-014490 : CTACTGGGAA*GAGCTGCTGGACAAGTTCCGGCCAGACATCGTGGTCAAGGACTGGTTCG
                   ---------+---------+---------+---------+---------+---------+ 778
OVRM1_0084_F04.b : CTACTGGGAA*GAGCTGCTGGNACAGTTCCGGCCCGACATCGg                
PTG01_0024_G12.b : CTACTGGGAAAGAGCTGCTGGACAAGTTCCGGCCAGACATCGTGGTCAAGGACTGGTTCG
PTG01_0017_A08.b : CTACTGGGAA*GAGCTGCTGGACAAGTTCCGGCCAGACATCGTGGTCAAGGACTGGTTCG
OVRM1_0002_D08.b : CTACTGGGAA*GAGCTGCTGGACAAGTCCCGG*CAGACATCGTGGTCNAGGACTGGTTCG


20110601C-014490 : CCGCCAGAGCAGACTGTGGTTGCACCTACCACATCCGAGTACAGCTGGGCTCCGCTGACT
                   ---------+---------+---------+---------+---------+---------+ 838
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b : CCGCCCGAGCAGACTGTGGGTGCACCCACCACAtccgaatacagctggcctccgctgact
PTG01_0017_A08.b : CCGCCAGAGCAGACTGTGGTTGCACCTACCACATCCGAGTACAGCTGGGCTCCGCTGACT
OVRM1_0002_D08.b : CCGCCAGAGCAGACTGTGGTTGCACCTACCACATCCGAGT                   


20110601C-014490 : ACATCGTCCTGGCCTCCTTCGAGCCCCCCGCTGTGACCATCCCTCAGTGGAACGATGCCC
                   ---------+---------+---------+---------+---------+---------+ 898
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b : acattcgtctgggcctccttcgagcccccggctgtgaccatccctcttggaaaaatgccc
PTG01_0017_A08.b : ACATCGTCCTGGCCTCCTTCGAGCCCCCCGCTGTGACCATCCCTCAGTGGAACGATGCCC
OVRM1_0002_D08.b :                                                             


20110601C-014490 : AGTGGAAGAAGTCTCCCACACCTTCTCGGGATACCCTCCAGGTGTC..............
                   ---------+---------+---------+---------+---------+---------+ 944
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b : agggggaaaaaggtctccccccttttcggaatacccccgggtgtccgccaatcctcttcc
PTG01_0017_A08.b : AGTGGAAGAAGTCTCCCACACCTTCTCGGGATACCCTCCAGGTGTCgcaacatcctcttc
OVRM1_0002_D08.b :                                                             


20110601C-014490 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b : aaaagggggccagggacccccttatggggcaggctggtaggggccccggttcccaaagga
PTG01_0017_A08.b : agcacgggggcaaggacaccagtactgggcaggctggtacggccccgggtcacaaaagca
OVRM1_0002_D08.b :                                                             


20110601C-014490 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b : gtttttttttcgccaagggagaaagggaccccccccccctggtgtaaacccttcccctgg
PTG01_0017_A08.b : gcttcttcgtcgcccacggagaccaggaccccacccccttcgtctacagcctacccatgg
OVRM1_0002_D08.b :                                                             


20110601C-014490 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b : agggccaggggaggacaccccctcttttccacttttttccaaagagccctcggaaataac
PTG01_0017_A08.b : gggggcagggaggcaccccctccttcccattctttccaaaagccttctgaattaaaccgt
OVRM1_0002_D08.b :                                                             


20110601C-014490 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b : cttgttttttccttgtttgggccccaaaacaaagggtccctcccggagggtggaaccccc
PTG01_0017_A08.b : gtttttccttgtccgccaaccagaacaaggtcccctcggggagggtgaccccccgggaat
OVRM1_0002_D08.b :                                                             


20110601C-014490 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b : cggagaaataatctccgccgggccccctagggaaaaacccctttgggaatttttggcccc
PTG01_0017_A08.b : aaatcttgccggcccccctagggaacaccaattgtgaaaacggcccgaccccaaattttg
OVRM1_0002_D08.b :                                                             


20110601C-014490 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b : tt                                                         
PTG01_0017_A08.b : gaaagtttttcaaaaaaaaaaaaaaagcccttgtctcttgggaggccccctaatactcgg
OVRM1_0002_D08.b :                                                             


20110601C-014490 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b :                                                             
PTG01_0017_A08.b : gggcaattacccacctttttgaaggccaaaagagtaaaaaagaggccctttaacggggga
OVRM1_0002_D08.b :                                                             


20110601C-014490 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
OVRM1_0084_F04.b :                                                             
PTG01_0024_G12.b :                                                             
PTG01_0017_A08.b : aacatgtgtttaaaacactggg                                     
OVRM1_0002_D08.b :