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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-014664

Length: 1,012

Sequence [FASTA format sequence]
GAGCGCGGGC AGCCGGGCGG CGGCTGGCGG GGTGTGAAGA AAAAAAATGA CACTTCAGTG
GGCGGCTGTT GCGACTTTTC TTTACGCTGA AATAGGACTC ATTTTAATCT TCTGTCTACC
TTTTATTCCT CCTCAGAGAT GGCAGAAGAT TTTTTCATTT AGCGTCTGGG GTAAAATTGC
AACTTTCTGG AACAAGGCTT TTCTTACTAT TATAGTCCTA TTGATTGTTC TATTTCTAGA
TGCTGTAAGA GAAGTAAGAA AGTATTCCTC AGCTCATGCC ATTGAAAGGA GCTCAGCTAG
CAGACCTGCT GCCTATGAAC ATACACAAAT GAAACTCTTT AGGTCTCAAA GAAATCTTTA
CATTTCTGGA TTTTCATTAT TTTTTTGGCT AGTGTTGAGA CGCCTGGTTA CCCTTATTAC
TCAGCTGGCA AAAGAGTTAT CAAACAAAGG AGTACTTAAA AGTCAAGCAG AAAGTACCAA
CAAGGCTGCC AAAAAATTCA TGGAAGAGAA TGAAAGACTA AAACGGCTTT TGAAAAACTA
TGGCAAAGAA GAAGATCACA TTTTGGAAGA AGAAAATAAA AAACTAGTCG AAGACAAGGA
AAAACTGCAA ACTGAATTAA AGAAGGTTTC AGATGCCCTT TCTAAGGCAC AAAACGATGT
GATGACAATG AAGGTGCAAT CAGAGCGACT TTCAAAAGAG TACGACTTAC TCCTGAAAGA
ACACTCAGAA CTTCAGGATC ATGCACGGAA AGGCAGTAAG AAAGGCCTGT GAACCTTATG
AAAGAAGATT GTGATACACC ATGTCAAGAT GACAAATTTG TTATCATGTT AGCCTCTAGA
AAATTTAAAT TCACTTCAGA AAAATATACC AGCCAGAATT TTTTGTAATG CTACATGTAT
AGGCTCTTAT CATAATGGCA TTATCACAAT ATTTGATGTT CAGACATATT GTAAAGCCTG
TCTTCCAGCT CTGAAGTAAA ATAATAGCAT GTCAAAAAAA AAAAAAAAAA AA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBCAP29B-cell receptor-associated protein 29 isoform b [Homo sapiens]. 385e-107O
Contig/Assembly ProteinBCAP29B-cell receptor-associated protein 29 isoform a [Homo sapiens]. 383e-115O
Contig/Assembly ProteinBCAP31B-cell receptor-associated protein 31 isoform a [Homo sapiens]. 2019e-52
Contig/Assembly ProteinBCAP31B-cell receptor-associated protein 31 isoform b [Homo sapiens]. 2002e-51O
Contig/Assembly ProteinBCAP31B-cell receptor-associated protein 31 isoform b [Homo sapiens]. 2002e-51O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBcap29B-cell receptor-associated protein 29 [Mus musculus]. 3592e-99O
Contig/Assembly ProteinBcap29B-cell receptor-associated protein 29 [Mus musculus]. 3592e-99O
Contig/Assembly ProteinBcap31B-cell receptor-associated protein 31 [Mus musculus]. 1962e-50O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC475884PREDICTED: similar to B-cell receptor-associated protein BAP29 isoform d [Canis familiaris]. 376e-104
Contig/Assembly ProteinLOC481080PREDICTED: similar to B-cell receptor-associated protein 31 (BCR-associated protein Bap31) (p28 Bap31) (CDM protein) (6C6-AG tumor-associated antigen) (DXS1357E) [Canis familiaris]. 2019e-52O
Contig/Assembly ProteinLOC610588PREDICTED: similar to B-cell receptor-associated protein 31 [Canis familiaris]. 95.95e-20O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBCAP29B-cell receptor-associated protein 29 [Bos taurus]. 393e-109O
Contig/Assembly ProteinBCAP31B-cell receptor-associated protein 31 [Bos taurus]. 1979e-51O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100622655PREDICTED: b-cell receptor-associated protein 29-like isoform 2 [Sus scrofa]. 430e-121O
Contig/Assembly ProteinLOC100622655PREDICTED: b-cell receptor-associated protein 29-like isoform 1 [Sus scrofa]. 430e-121O
Contig/Assembly ProteinLOC100520774PREDICTED: b-cell receptor-associated protein 31-like [Sus scrofa]. 1962e-50O


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
BMWN10069D03BMWN1_0069_D03.bHX209784 
HTMT10075C12HTMT1_0075_C12.bFS669545 AK399924
LVR010078E02LVR01_0078_E02.bBP444705 
MLN010038F11MLN01_0038_F11.bCJ010638 

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
556C200.500WSGAC/D
T200.500GAT/D


Alignment:      TOP

20110601C-014664 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
HTMT1_0075_C12.b : ttttaagacggtagaggxxxxxxxxxxx
LVR01_0078_E02.b : gggggggnnnntagcttagtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLN01_0038_F11.b : nnnggctaggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0069_D03.b : tttgggatggtacgacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-014664 : .................................GAGCGCGGGCAGCCGGGCGGCGGCTGG
---------+---------+---------+---------+---------+---------+ 27
HTMT1_0075_C12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGCGCGGGCAGCCGGGCGGCGGCTGG
LVR01_0078_E02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCGCGGGCAGCCGGGCGGCGGCTGG
MLN01_0038_F11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCGCGGGCAGCCGGGCGGCGGCTGG
BMWN1_0069_D03.b : xxxxxxxxxgccctcgcgtcggcggccgcggagcagcgcgggcagccgggtggcggctgg
20110601C-014664 : CGGGGTGTGAAGAAAAAAAATGACACTTCAGTGGGCGGCTGTTGCGACTTTTCTTTACGC
---------+---------+---------+---------+---------+---------+ 87
HTMT1_0075_C12.b : CGGGGTGTGAAGAAAAAAAATGACACTTCAGTGGGCGGCTGTTGCGACTTTTCTTTACGC
LVR01_0078_E02.b : CGGGGTGTGAAGAAAAAAAATGACACTTCAGTGGGCGGCTGTTGCGACTTTTCTTTACGC
MLN01_0038_F11.b : CGGGGTGTGAAGAAAAAAAATGACACTTCAGTGGGCGGCTGTTGCGACTTTTCTTTACGC
BMWN1_0069_D03.b : cggGGTGTGAAGAAAAAAAATGACACTTCAGTGGGCGGCTGTTGCGACTTTTCTTTACGC
20110601C-014664 : TGAAATAGGACTCATTTTAATCTTCTGTCTACCTTTTATTCCTCCTCAGAGATGGCAGAA
---------+---------+---------+---------+---------+---------+ 147
HTMT1_0075_C12.b : TGAAATAGGACTCATTTTAATCTTCTGTCTACCTTTTATTCCTCCTCAGAGATGGCAGAA
LVR01_0078_E02.b : TGAAATAGGACTCATTTTAATCTTCTGTCTACCTTTTATTCCTCCTCAGAGATGGCAGAA
MLN01_0038_F11.b : TGAAATAGGACTCATTTTAATCTTCTGTCTACCTTTTATTCCTCCTCAGAGATGGCAGAA
BMWN1_0069_D03.b : TGAAATAGGACTCATTTTAATCTTCTGTCTACCTTTTATTCCTCCTCAGAGATGGCAGAA
20110601C-014664 : GATTTTTTCATTTAGCGTCTGGGGTAAAATTGCAACTTTCTGGAACAAGGCTTTTCTTAC
---------+---------+---------+---------+---------+---------+ 207
HTMT1_0075_C12.b : GATTTTTTCATTTAGCGTCTGGGGTAAAATTGCAACTTTCTGGAACAAGGCTTTTCTTAC
LVR01_0078_E02.b : GATTTTTTCATTTAGCGTCTGGGGTAAAATTGCAACTTTCTGGAACAAGGCTTTTCTTAC
MLN01_0038_F11.b : GATTTTTTCATTTAGCGTCTGGGGTAAAATTGCAACTTTCTGGAACAAGGCTTTTCTTAC
BMWN1_0069_D03.b : GATTTTTTCATTTAGCGTCTGGGGTAAAATTGCAACTTTCTGGAACAAGGCTTTTCTTAC
20110601C-014664 : TATTATAGTCCTATTGATTGTTCTATTTCTAGATGCTGTAAGAGAAGTAAGAAAGTATTC
---------+---------+---------+---------+---------+---------+ 267
HTMT1_0075_C12.b : TATTATAGTCCTATTGATTGTTCTATTTCTAGATGCTGTAAGAGAAGTAAGAAAGTATTC
LVR01_0078_E02.b : TATTATAGTCCTATTGATTGTTCTATTTCTAGATGCTGTAAGAGAAGTAAGAAAGTATTC
MLN01_0038_F11.b : TATTATAGTCCTATTGATTGTTCTATTTCTAGATGCTGTAAGAGAAGTAAGAAAGTATTC
BMWN1_0069_D03.b : TATTATAGTCCTATTGATTGTTCTATTTCTAGATGCTGTAAGAGAAGTAAGAAAGTATTC
20110601C-014664 : CTCAGCTCATGCCATTGAAAGGAGCTCAGCTAGCAGACCTGCTGCCTATGAACATACACA
---------+---------+---------+---------+---------+---------+ 327
HTMT1_0075_C12.b : CTCAGCTCATGCCATTGAAAGGAGCTCAGCTAGCAGACCTGCTGCCTATGAACATACACA
LVR01_0078_E02.b : CTCAGCTCATGCCATTGAAAGGAGCTCAGCTAGCAGACCTGCTGCCTATGAACATACACA
MLN01_0038_F11.b : CTCAGCTCATGCCATTGAAAGGAGCTCAGCTAGCAGACCTGCTGCCTATGAACATACACA
BMWN1_0069_D03.b : CTCAGCTCATGCCATTGAAAGGAGCTCAGCTAGCAGACCTGCTGCCTATGAACATACACA
20110601C-014664 : AATGAAACTCTTTAGGTCTCAAAGAAATCTTTACATTTCTGGATTTTCATTATTTTTTTG
---------+---------+---------+---------+---------+---------+ 387
HTMT1_0075_C12.b : AATGAAACTCTTTAGGTCTCAAAGAAATCTTTACATTTCTGGATTTTCATTATTTTTTTG
LVR01_0078_E02.b : AATGAAACTCTTTAGGTCTCAAAGAAATCTTTACATTTCTGGATTTTCATTATTTTTTTG
MLN01_0038_F11.b : AATGAAACTCTTTAGGTCTCAAAGAAATCTTTACATTTCTGGATTTTCATTATTTTTTTG
BMWN1_0069_D03.b : AATGAAACTCTTTAGGTCTCAAAGAAATCTTTACATTTCTGGATTTTCATTATTTTTTTG
20110601C-014664 : GCTAGTGTTGAGACGCCTGGTTACCCTTATTACTCAGCTGGCAAAAGAGTTATCAAACAA
---------+---------+---------+---------+---------+---------+ 447
HTMT1_0075_C12.b : GCTAGTGTTGAGACGCCTGGTTACCCTTATTACTCAGCTGGCAAAAGAGTTATCAAACAA
LVR01_0078_E02.b : GCTAGTGTTGAGACGCCTGGTTACCCTTATTACTCAGCTGGCAAAAGAGTTATCAAACAA
MLN01_0038_F11.b : GCTAGTGTTGAGACGCCTGGTTACCCTTATTACTCAGCTGGCAAAAGAGTTATCAAACAA
BMWN1_0069_D03.b : GCTAGTGTTGAGACGCCTGGTTACCCTTATTACTCAGCTGGCAAAAGAGTTATCAAACAA
20110601C-014664 : AGGAGTACTTAAAAGTCAAGCAGAAAGTACCAACAAGGCTGCCAAAAAATTCATGGAAGA
---------+---------+---------+---------+---------+---------+ 507
HTMT1_0075_C12.b : AGGAGTACTTAAAAGTCAAGCAGAAAGTACCAACAAGGCTGCCAAAAAATTCATGGAAGA
LVR01_0078_E02.b : AGGAGTACTTAAAAGTCAAGCAGAAAGTACCAACAAGGCTGCCAAAAAATTCATGGAAGA
MLN01_0038_F11.b : AGGAGTACTTAAAAGTCAAGCAGAAAGTACCAACAAGGCTGCCAAAAAATTCATGGAAGA
BMWN1_0069_D03.b : AGGAGTACTTAAAAGTCAAGCAGAAAGTACCAACAAGGCTGCCAAAAAATTCATGGAAGA
20110601C-014664 : GAATGAAAGACTAAAACGGCTTTTGAAAAACTATGGCAAAGAAGAAGATCACATTTTGGA
---------+---------+---------+---------+---------+---------+ 567
HTMT1_0075_C12.b : GAATGAAAGACTAAAACGGCTTTTGAAAAACTATGGCAAAGAAGAAGATCACATTTTGGA
LVR01_0078_E02.b : GAATGAAAGACTAAAACGGCTTTTGAAAAACTATGGCAAAGAAGAAGATCACATTTTGGA
MLN01_0038_F11.b : GAATGAAAGACTAAAACGGCTTTTGAAAAACTATGGCAAAGAAGAAGACCACATTTTGGA
BMWN1_0069_D03.b : GAATGAAAGACTAAAACGGCTTTTGAAAAACTATGGCAAAGAAGAAGACCACATTTTGGA
20110601C-014664 : AGAAGAAAATAAAAAACTAGTCGAAGACAAGGAAAAACTGCAAACTGAATTAAAGAAGGT
---------+---------+---------+---------+---------+---------+ 627
HTMT1_0075_C12.b : AGAAGAAAATAAAAAACTAGTCGAAGACAAGGAAAAACTGCAAACTGAATTAAAGAAGGT
LVR01_0078_E02.b : AGAAGAAAATAAAAAACTAGTCGAAGACAAGGAAAAACTGCAAACTGAATTAAAGAAGGT
MLN01_0038_F11.b : AGAAGAAAATAAAAAACTAGTCGAAGACAAGGAAAAACTGCAAACTGAATTAAAGAAGGT
BMWN1_0069_D03.b : AGAAGAAAATAAAAAACTAGTCGAAGACAAGGAAAAACTGCAAACTGAATTAAAGAAGGT
20110601C-014664 : TTCAGATGCCCTTTCTAAGGCACAAAACGATGTGATGACAATGAAGGTGCAATCAGAGCG
---------+---------+---------+---------+---------+---------+ 687
HTMT1_0075_C12.b : TTCAGATGCCCTTTCTAAGGCACAAAACGATGTGATGACAATGAAGGTGCAATCAGAGCG
LVR01_0078_E02.b : TTCAGATGCCCTTTCTAAGGCACAAAACGATGTGATGACAATGAAGGTGCAATCAGAGCG
MLN01_0038_F11.b : TTCAGATGCCCTTTCTAAGGCACAAAACGATGTGATGACAATGAAGGTGCAATCAGAGCG
BMWN1_0069_D03.b : TTCAGATGCCCTTTCTAAGGCACAAAACGATGTGATGACAATGAAGGTGCAATCAGAGCG
20110601C-014664 : ACTTTCAAAAGAGTACGACTTACTCCTGAAAGAACACTCAGAACTTCAGGATCATGCACG
---------+---------+---------+---------+---------+---------+ 747
HTMT1_0075_C12.b : ACTTTCAAAAGAGTACGACTTACTCCTGAAAGAACACTCAGAACTTCAGGATCATGCACG
LVR01_0078_E02.b : ACTTTCAAAAGAGTACGACTTACTCCTGAAAGAACACTCAGAACTTCAGGATCATGCACG
MLN01_0038_F11.b : ACTTTCAAAAGAGTACGACTTACTCCTGAAAGAACACTCAGAACTTCAGGATCATGCACG
BMWN1_0069_D03.b : ACTTTCAAAAGAGTACGACTTACTCCTGAAAGAACACTCAGAACTTCAAGATCATGCACN
20110601C-014664 : GAAAGGCAGTAAGAAAGGCCTGTGAACCTTATGAAAGAAGATTGTGATACACCATGTCAA
---------+---------+---------+---------+---------+---------+ 807
HTMT1_0075_C12.b : GAAAGGCAGTAAGAAAGGCCTGTGAACCTTATNGAAGAAGATTGTGATACACCATGTCAA
LVR01_0078_E02.b : GAAAGGCAGTAAGAAAGGCCTGTGAACCTTATGAAAGAAGATTGTGATACACCATGTCAA
MLN01_0038_F11.b : GAAAGGCAGTAAGAAAGGCCTGTGAACCTTATGAAAGAAGATTGTGATACACCATGTCAA
BMWN1_0069_D03.b : GNAAGGCAGTAAGAAAAGCCTGTGAACCCTATGAAAGAAGATTGTGA*ACACCATGTCAA
20110601C-014664 : GATGACAAATTTGTTATCATGTTAGCCTCTAGAAAATTTA*AATTCACTTCAGAAAAATA
---------+---------+---------+---------+---------+---------+ 866
HTMT1_0075_C12.b : GATGACAAATTTGNTATCATGGTAGCCTCTAGAAAATTTA*AATTCACTTCAGAAA*ATA
LVR01_0078_E02.b : GATGACAAATTTGTTATCATGTTAGCCTCTAGAAAATTTAAAATTCACTTCAGAAAAATA
MLN01_0038_F11.b : GATGACAAATTTGTTATCATGTTAGCCTCTAGAAAATTTAAATTTCAC*TCAGAAAAATA
BMWN1_0069_D03.b : GATGACAAtttgttatcatgttagcttcaaaaaatttaaattcacttcagaaaaatatac
20110601C-014664 : TACCAGCCAG*AATTTTTTGTAATGCTACATGTATAGGCTCTTATCATAATGGCATTATC
---------+---------+---------+---------+---------+---------+ 925
HTMT1_0075_C12.b : TACCAGCCAG**AATTTTTGNTATGCTACATGTATAGGCTCTTATCANTATGGCATTATC
LVR01_0078_E02.b : TACCAGCCAGGAATTTTTTGTAATGCTACATGTATAGGCTCTTATCATAATGGCATTATC
MLN01_0038_F11.b : TACCAGCCAGAATTTTTTTGTA*TGCTACATGTATAGGCTCTTATCATAATGGCATTATC
BMWN1_0069_D03.b : cagccaaattttttgaaggctacatgttaaggccctatcaaaaggccatatcccaaaatt
20110601C-014664 : ACAATATTTGATGTTCAGACATATTGTAAAGCCTGTCTTCCAGCTCTGAAGTAAAATAAT
---------+---------+---------+---------+---------+---------+ 985
HTMT1_0075_C12.b : ANCATAtttgatgttccagacatatggtaaagcctgtcttccagctctgaagtaaatata
LVR01_0078_E02.b : ACAATATTTGATGTTccagacatatttgtaaagcctgtcttccaacttctaaagtaaaat
MLN01_0038_F11.b : ACAATATTTGATGTTCAGACATATTGTAAAGCCTGTCTTCCAGCTCTGAAGTAAAATAAT
BMWN1_0069_D03.b : gaggtcccaaaatatgaaagacttcttccaccctaattaaaaaaacctggcaaacccttg
20110601C-014664 : AGCATGTCAAAAAAAAAAAAAAAAAAA.................................
---------+---------+---------+---------+---------+---------+ 1012
HTMT1_0075_C12.b : agcatgtcaaacacctgtttagatactgaaagaacctggattatggggggcggtaaccaa
LVR01_0078_E02.b : a
MLN01_0038_F11.b : AGCATGTCaaaaaaaaaaaaaaaaaaaaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0069_D03.b : ttaaaccgaaaaaaccgggtaaggggggtttaccaaacgggaaaattttgctgtgtttcc
20110601C-014664 : ............................................................
---------+---------+---------+---------+---------+---------+ 1012
HTMT1_0075_C12.b : taccgggaaaatccttaccaggttttccaaattaaattttagggctggaaccattaaaac
LVR01_0078_E02.b :
MLN01_0038_F11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0069_D03.b : aaataattttagggcgaaccttaaaccctagaacccggattccgtaaaattttttccgga
20110601C-014664 : ............................................................
---------+---------+---------+---------+---------+---------+ 1012
HTMT1_0075_C12.b : cttggaacctccgggaattccccgaaaaaattccttatcccagagaggggtgggaaaaat
LVR01_0078_E02.b :
MLN01_0038_F11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxcttgccccctttataaccccggacgggaaaacgc
BMWN1_0069_D03.b : ggagtttgaaaaattcttttcccattttctaaaaaaagagaaaattaatttccctcttta
20110601C-014664 : ............................................................
---------+---------+---------+---------+---------+---------+ 1012
HTMT1_0075_C12.b : ttcttaccccaaattttttttggggataaggggggaaagttttattttccccccct
LVR01_0078_E02.b :
MLN01_0038_F11.b : cacctgggaactttgaaggaccctcctcgggggtgcaaattggcacacccccaagaatta
BMWN1_0069_D03.b : aaatggaagaaaaaaggccagttttttacgtgtgatttctccaccccaaaatttttgtcg
20110601C-014664 : ............................................................
---------+---------+---------+---------+---------+---------+ 1012
HTMT1_0075_C12.b :
LVR01_0078_E02.b :
MLN01_0038_F11.b : acccaggg
BMWN1_0069_D03.b : gcccggaattggttggaaaacaaaccccctcccgggtacctcccccccattgggatataa
20110601C-014664 : ............................................................
---------+---------+---------+---------+---------+---------+ 1012
HTMT1_0075_C12.b :
LVR01_0078_E02.b :
MLN01_0038_F11.b :
BMWN1_0069_D03.b : aagggggggtacaccggggtctttttatgaaaaaaacnnnnnnnnnnnnnnnnnnnnnnn
20110601C-014664 : ............................................................
---------+---------+---------+---------+---------+---------+ 1012
HTMT1_0075_C12.b :
LVR01_0078_E02.b :
MLN01_0038_F11.b :
BMWN1_0069_D03.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn