[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-014783
Length:
970
Sequence:
[FASTA format sequence]
ACAGCGCTCC GGCGTCTCCG CGCGCGATTT AAAACCGGCT CTGGCGACTC CGAAGACGAG
ATGGGACCTC CTTGTCCGGC CACAATGAAT AAGTCTCCTT CAGAGACCCG AGGACGCCCC
CATAGCGCCT CCTCACCTTC GGAGCGGGTA TTCTCCATGC CCCATCCCAG GAAGGCCCCT
CTCAGTACTG CTGGCACCCC AGTCCTTGAA GACTTTCCTC AGAATGATGA CGAAAAGGAG
CGACTGCAGC GGAGGCGCTC TAGGGTCTTT GACCTGCAGT TCAGCACAGA CTCGCCTCGT
TTGCTGGCGT CCCCATCCAG CAGGAATATT GATGTTTCAG CAACAATTCC TAAATTTACA
AACACACAAA TTACTGAGCA TTACTCCACC TGTATCAAAC TGTCCACTGA AAATAAAATC
ACTACCAAGA ATGCTTTTGG CTTGCACTTG ATTGATTTTA TGTCAGAGAT TCTTAAACAG
AAAGATGCCG AACCAACCAA CTTTAAAGTG GCTGCTGGCA CTCTGGATGC CAGCACCAAG
ATCTATGCTG TGCGTGTAGA TGCTGTCCAT GCCGATGTGT ACAGAGTCCT CGGGGGCCTG
GGCAAGGATG CACCATGTCC GGAAGAAGCA GAGGACCATG GTGCAGATGG AAGTGCAGTT
GAAACAGGAA CAACCAAGAA GGCTCCGAAA CCAAGGAAGA AGCACTCATG TAAAACCGTA
GAGCAGAATA TAAACAACCT CAACGTATCT GCAGCAGATC GAAAGTGTGA GGTGGATCCC
ATGTTCCAGA AGACGGCAGC CTCGTTTGAT GAGTGCAGCA CAGCAGGGGT GTTTCTCTCC
ACCCTGCACT GCCACGACTA TAGCAGTGAG CTGCTCTTCC CCCTCGATGT CCAGACTCTC
TCCACGGGAG ACCCCCCGGA GTTGCCCAAT TTAGGTTGGG GGGAGATGAA CCGATTTAAA
ACCGCCCCTG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | NCAPH | condensin complex subunit 2 [Homo sapiens]. | 516 | e-146 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | Ncaph | condensin complex subunit 2 [Mus musculus]. | 434 | e-122 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC475741 | PREDICTED: similar to Condensin subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (hCAP-H) (XCAP-H homolog) [Canis familiaris]. | 496 | e-140 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | NCAPH | condensin complex subunit 2 [Bos taurus]. | 514 | e-146 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
![]() |
![]() | LOC100525691 | PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like [Sus scrofa]. | 371 | e-103 | |
![]() |
![]() | LOC100620893 | PREDICTED: condensin complex subunit 2-like [Sus scrofa]. | 113 | 1e-25 | O |
|
|
20110601C-014783 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
DCI01_0017_C06.b : nnnttagtaactaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0014_B03.b :
ITT01_0030_A12.b :
THY01_0092_F09.b :
THY01_0079_E03.b :
20110601C-014783 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
DCI01_0017_C06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0014_B03.b : ctagcaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0030_A12.b : nttgatgxxxxxxxx
THY01_0092_F09.b : tcttggcttaaactgcttcgtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0079_E03.b : ctttttggtggxxxxxxx
20110601C-014783 : ......................................ACAGCGCTCCGGCGTCTCCGCG
---------+---------+---------+---------+---------+---------+ 22
DCI01_0017_C06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACAGCGCTCCGGCGTCTCCGCG
THY01_0014_B03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxcAGCGCTCCGGCGTCTCCGCG
ITT01_0030_A12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgAGCGCTCCGGCGTCTCCGCG
THY01_0092_F09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxcAGCGCTCCGGCGTCTCCGCG
THY01_0079_E03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-014783 : CGCGATTTAAAACCGGCTCTGGCGACTCCGAAGACGA*GATGGGACCTCCTTGTCCGGCC
---------+---------+---------+---------+---------+---------+ 81
DCI01_0017_C06.b : CGCGATTTAAAACCGGCTCTGGCGACTCCGAAGACGA*GATGGGACCTCCTTGTCCGGCC
THY01_0014_B03.b : CGCGATTTAAAACCGGCTCTGGCGACTCCGAAGACGA*GATGGGACCTCCTTGTCCGGCC
ITT01_0030_A12.b : CGCGATTTAAAACCGGCTCTGGCGACTCCGAAGACGA*GATGGGACCTCCTTGTCCGGCC
THY01_0092_F09.b : CGCGATTTAAAACCGGCTCTGGCGACTCCGAAGACGA*GATGGGACCTCCTTGTCCGGCC
THY01_0079_E03.b : xxxxxxxxxxxxCCGGCTCTGGCGACTCCGAAGACGAAGATGGGACCTCCTTGTCCGGCC
20110601C-014783 : ACAATGAATAAGTCTCCTTCAGAGACCCGAGGACGCCCCCATAGCGCCTCCTCACCTTCG
---------+---------+---------+---------+---------+---------+ 141
DCI01_0017_C06.b : ACAATGAATAAGTCTCCTTCAGAGACCCGAGGACGCCCCCATAGCGCCTCCTCACCTTCG
THY01_0014_B03.b : ACAATGAATAAGTCTCCTTCAGAGACCCGAGGACGCCCCCATAGCGCCTCCTCACCTTCG
ITT01_0030_A12.b : ACAATGAATAAGTCTCCTTCAGAGACCCGAGGACGCCCCCATAGCGCCTCCTCACCTTCG
THY01_0092_F09.b : ACAATGAATAAGTCTCCTTCAGAGACCCGAGGACGCCCCCATAGCGCCTCCTCACCTTCG
THY01_0079_E03.b : ACAATGAATAAGTCTCCTTCAGAGACCCGAGGACGCCCCCATAGCGCCTCCTCACCTTCG
20110601C-014783 : GAGCGGGTATTCTCCATGCCCCATCCCAGGAAG*GCCCCTCTCAGTACTGCTGGCACCCC
---------+---------+---------+---------+---------+---------+ 200
DCI01_0017_C06.b : GAGCGGGTATTCTCCATGCCCCATCCCAGGAAG*GCCCCTCTCAGTACTGCTGGCACCCC
THY01_0014_B03.b : GAGCGGGTATTCTCCATGCCCCATCCCAGGAAG*GCCCCTCTCAGTACTGCTGGCACCCC
ITT01_0030_A12.b : GAGCGGGTATTCTCCATGCCCCATCCCAGGAAG*GCCCCTCTCAGTACTGCTGGCACCCC
THY01_0092_F09.b : GAGCGGGTATTCTCCATGCCCCATCCCAGGAAG*GCCCCTCTCAGTACTGCTGGCACCCC
THY01_0079_E03.b : GAGCGGGTATTCTCCATGCCCCATCCCAGGAAGAGCCCCTCTCAGTACTGCTGGCACCCC
20110601C-014783 : AGTCCTTGAAGACTTTCCTCAGAATGATGACGAAAAGGAGCGACT*GCAGCGGAGGCGCT
---------+---------+---------+---------+---------+---------+ 259
DCI01_0017_C06.b : AGTCCTTGAAGACTTTCCTCAGAATGATGACGAAAAGGAGCGACT*GCAGCGGAGGCGCT
THY01_0014_B03.b : AGTCCTTGAAGACTTTCCTCAGAATGATGACGAAAAGGAGCGACT*GCAGCGGAGGCGCT
ITT01_0030_A12.b : AGTCCTTGAAGACTTTCCTCAGAATGATGACGAAAAGGAGCGACT*GCAGCGGAGGCGCT
THY01_0092_F09.b : AGTCCTTGAAGACTTTCCTCAGAATGATGACGAAAAGGAGCGACT*GCAGCGGAGGCGCT
THY01_0079_E03.b : AGTCCTTGAAGACTTTCCTCAGAATGATGACGAAAAGGAGCGACTGGCAGCGGAGGCGCT
20110601C-014783 : CTAGGGTCTTTGACCTGCAGTTCAGCACAGACTCGCCTCGTTTGCTGGCGTCCCCATCCA
---------+---------+---------+---------+---------+---------+ 319
DCI01_0017_C06.b : CTAGGGTCTTTGACCTGCAGTTCAGCACAGACTCGCCTCGTTTGCTGGCGTCCCCGTCCA
THY01_0014_B03.b : CTAGGGTCTTTGACCTGCAGTTCAGCACAGACTCGCCTCGTTTGCTGGCGTCCCCATCCA
ITT01_0030_A12.b : CTAGGGTCTTTGACCTGCAGTTCAGCACAGACTCGCCTCGTTTGCTGGCGTCCCCGTCCA
THY01_0092_F09.b : CTAGGGTCTTTGACCTGCAGTTCAGCACAGACTCGCCTCGTTTGCTGGCGTCCCCATCCA
THY01_0079_E03.b : CTAGGGTCTTTGACCTGCAGTTCAGCACAGACTCGCCTCGTTTGCTGGCGTCCCCATCCA
20110601C-014783 : GCAGGAATATTGATGTTTCAGCAACAATTCCTAAATTTACAAACACACAAATTACTGAGC
---------+---------+---------+---------+---------+---------+ 379
DCI01_0017_C06.b : GCAGGAATATTGATGTTTCAGCAACAATTCCTAAATTTACAAACACACAAATTACTGAGC
THY01_0014_B03.b : GCAGGAATATTGATGTTTCAGCAACAATTCCTAAATTTACAAACACACAAATTACTGAGC
ITT01_0030_A12.b : GCAGGAATATTGATGTTTCAGCAACAATTCCTAAATTTACAAACACACAAATTACTGAGC
THY01_0092_F09.b : GCAGGAATATTGATGTTTCAGCAACAATTCCTAAATTTACAAACACACAAATTACTGAGC
THY01_0079_E03.b : GCAGGAATATTGATGTTTCAGCAACAATTCCTAAATTTACAAACACACAAATTACTGAGC
20110601C-014783 : ATTACTCCACCTGTATCAAACTGTCCACTGAAAATAAAATCACTACCAAGAATGCTTTTG
---------+---------+---------+---------+---------+---------+ 439
DCI01_0017_C06.b : ATTACTCCACCTGTATCAAACTGTCCACTGAAAATAAAATCACTACCAAGAATGCTTTTG
THY01_0014_B03.b : ATTACTCCACCTGTATCAAACTGTCCACTGAAAATAAAATCACTACCAAGAATGCTTTTG
ITT01_0030_A12.b : ATTACTCCACCTGTATCAAACTGTCCACTGAAAATAAAATCACTACCAAGAATGCTTTTG
THY01_0092_F09.b : ATTACTCCACCTGTATCAAACTGTCCACTGAAAATAAAATCACTACCAAGAATGCTTTTG
THY01_0079_E03.b : ATTACTCCACCTGTATCAAACTGTCCACTGAAAATAAAATCACTACCAAGAATGCTTTTG
20110601C-014783 : GCTTGCACTTGATTGATTTTATGTCAGAGATTCTTAAACAGAAAGATGCCGAACCAACCA
---------+---------+---------+---------+---------+---------+ 499
DCI01_0017_C06.b : GCTTGCACTTGATTGATTTTATGTCAGAGATTCTTAAACAGAAAGATGCCGAACCAACCA
THY01_0014_B03.b : GCTTGCACTTGATTGATTTTATGTCAGAGATTCTTAAACAGAAAGATGCCGAACCAACCA
ITT01_0030_A12.b : GCTTGCACTTGATTGATTTTATGTCAGAGATTCTTAAACAGAAAGATGCCGAACCAACCA
THY01_0092_F09.b : GCTTGCACTTGATTGATTTTATGTCAGAGATTCTTAAACAGAAAGATGCCGAACCAACCA
THY01_0079_E03.b : GCTTGCACTTGATTGATTTTATGTCAGAGATTCTTAAACAGAAAGATGCCGAACCAACCA
20110601C-014783 : ACTTTAAAGTGGCTGCTGGCACTCTGGATGCCAGCACCAAGATCTATGCTGTGCGTGTAG
---------+---------+---------+---------+---------+---------+ 559
DCI01_0017_C06.b : ACTTTAAAGTGGCTGCTGGCACTCTGGATGCCAGCACCAAGATCTATGCTGTGCGTGTAG
THY01_0014_B03.b : ACTTTAAAGTGGCTGCTGGCACTCTGGATGCCAGCACCAAGATCTATGCTGTGCGTGTAG
ITT01_0030_A12.b : ACTTTAAAGTGGCTGCTGGCACTCTGGATGCCAGCACCAAGATCTATGCTGTGCGTGTAG
THY01_0092_F09.b : ACTTTAAAGTGGCTGCTGGCACTCTGGATGCCAGCACCAAGATCTATGCTGTGCGTGTAG
THY01_0079_E03.b : ACTTTAAAGTGGCTGCTGGCACTCTGGATGCCAGCACCAAGATCTATGCTGTGCGTGTAG
20110601C-014783 : ATGCTGTCCATGCCGATGTGTACAGAGTCCTCGGGGGCCTGGGCAAGGATGCACCATGTC
---------+---------+---------+---------+---------+---------+ 619
DCI01_0017_C06.b : ATGCTGTCCATGCCGATGTGTACAGAGTCCTCGGGGGGCTGGGCAAAGATGCACCATGTC
THY01_0014_B03.b : ATGCTGTCCATGCCGATGTGTACAGAGTCCTCGGGGGCCTGGGCAAGGATGCACCATGTC
ITT01_0030_A12.b : ATGCTGTCCATGCCGATGTGTACAGAGTCCTCGGGGGCCTGGGCAAGGATGCACCATGTC
THY01_0092_F09.b : ATGCTGTCCATGCCGATGTGTACAGAGTCCTCGGGGGCCTGGGCAAGGATGCACCATGTC
THY01_0079_E03.b : ATGCTGTCCATGCCGATGTGTACAGAGTCCTCGGGGGCCTGGGCAAGGATGCACCATGTC
20110601C-014783 : CGGAAGAAGCAGAGGACCATGGTGCAGATGGAA*GTGCAGTTGAAACAGGAACAACCAAG
---------+---------+---------+---------+---------+---------+ 678
DCI01_0017_C06.b : CNGGAGAAGCAGAAGACCATGGTGCAGATGGAA*GTGCAGTTTGGACAGGAAACACCAAG
THY01_0014_B03.b : CGGAAGAAGCAGAGGACCATGGTGCAGATGGAA*GTGCAGTTGAAACAGGAACAACCAAG
ITT01_0030_A12.b : CGGAAGAAGCAGAGGACCATGGTGCAGATGGAA*GTGCAGTTGAAACAGGAACAACCAAG
THY01_0092_F09.b : CGGAAGAAGCAGAGGACCATGGTGCAGATGGAA*GTGCAGTTGAAACAGGAACAACCAAG
THY01_0079_E03.b : CGGAAGAAGCAGAGGACCATGGTGCAGATGGAAAGTGCAGT*GAAACAGGAACAACCAAG
20110601C-014783 : AAGGCTCCGAAACCAAGGAAGAAGCACTCATGTAAAACCGTAGAGCAGAATATAAACAAC
---------+---------+---------+---------+---------+---------+ 738
DCI01_0017_C06.b : AAGGCTCCGAAACCAAGGAAGA*GCACTCATGTAAAccgtagagcaaatataaacaactt
THY01_0014_B03.b : AAGGCTCCGAAAC*AAGGAAGAAGCACTCATGTAAAACCGTAGAGCAGAATATAAACAAC
ITT01_0030_A12.b : AAGGCTCCGAAACCAAGGAAGAAGCACTCATGTAAAACCGTAGAGCAGAATATAAACAAC
THY01_0092_F09.b : AAGGCTCCGAAACCAAGGAAGAAGCACTCATGTAAAACCGTAGAGCAGAATATAAACAAC
THY01_0079_E03.b : AAGGCTCCGAAACCAAGGAAGAAGCACTCATGTAAAACCGTAGAGCAGAATATAAACAAC
20110601C-014783 : CTCAACGTATCTGCAGCAGATCGAAAGTGTGAGGTGGATCCCATGTTCCAGAAGACGGCA
---------+---------+---------+---------+---------+---------+ 798
DCI01_0017_C06.b : cacgtatctgcagcagatccaaagtgtgagtggaatccatgttccagagcacgcagcttc
THY01_0014_B03.b : CTCAACGTATCTGCAGCAGATCGAAAGTGTGAGGGGGATCCTATGTTCCAGAAGACGGCA
ITT01_0030_A12.b : CTCAACGTATCTGCAGCAGATCGAAAGTGTGAGGTGGATCCCATGTTCCAGAAGACGGCA
THY01_0092_F09.b : CTCAACGTATCTGCAGCAGATCGAAAGTGTGAGGTGGATCCCCTGTTCCAGAAGACGGCA
THY01_0079_E03.b : CCTCACGTATCTGCAGCAGATCGAAAGTGTGAGGTGGATCCCNATGTNCAGAAGACNGCA
20110601C-014783 : GCCTCGTTTGATGAGTGCAGCACAGCAGGGGTGTTTCTCTCCACCCTGCACTGCCACGAC
---------+---------+---------+---------+---------+---------+ 858
DCI01_0017_C06.b : gttgatgatgcacaccacagggtgtttctctccacctgcatgcccaactatgcagtgact
THY01_0014_B03.b : GCCTCGTTTGATGAGTGCgtaccgcaggggtgttcttctccccccg
ITT01_0030_A12.b : GCCTCGTTTGATGAGTGCAGCACAGCAGGGGTGTTTCTCTNCACCCTGCACTGCCACGAC
THY01_0092_F09.b : GCCTCGTTTGATGAGTGCGGCACACCAGGGGTGTTTCTCTCCACCCTGCACTGGCACGAC
THY01_0079_E03.b : GCCTCGTTTGATGAGTGCAGCACAGCAGGGGTGTTTCTCTCCACCCTGCACTGCCACGAC
20110601C-014783 : TATAGCAGTGAGCTGCTCTTCCCCCTCGATGTCCAGACTCTCTCCACGGGAGACCCCCCG
---------+---------+---------+---------+---------+---------+ 918
DCI01_0017_C06.b : gctctccctcgatgtcaaactctctcaccgagaaccccgagtgcccgatttagtgggtga
THY01_0014_B03.b :
ITT01_0030_A12.b : TATAGCAGTGAGCTGCTCTTCCCCCctcgatgtcagactctctccaccggagacccccgg
THY01_0092_F09.b : TATAGCAGTGAGCTGCTCTTCCCCCTCGATGTCCAGACTCTCTCCACGGGAGACCCCCCG
THY01_0079_E03.b : TATAGCAGTGAGCTGCTCTTCCCCntcgatgtccagactctctccaccggagaacccccc
20110601C-014783 : GAGTTGCCCAATTTAGGTTGGGGGGAGATGAACCGATTTAAAACCGCCCCTG........
---------+---------+---------+---------+---------+---------+ 970
DCI01_0017_C06.b : aatgacgattaaacgccctgcacatgtgtgagatcgcaattgctttctggcgggtcngtc
THY01_0014_B03.b :
ITT01_0030_A12.b : aagtgcccgattttagttgggtggagatgaccgatttaaaagccccctgcagcaatgtgt
THY01_0092_F09.b : GAGTTGCCCAATTTAGGTTGGGGGGAGATGAACCGATTTAAAACCGCCCCTGcaacaatg
THY01_0079_E03.b : cgagtgcccgttttaggtggggtggagatgaccgatttaaagcgcccctgc
20110601C-014783 : ............................................................
---------+---------+---------+---------+---------+---------+ 970
DCI01_0017_C06.b : ctaatggaacacaaccctatgatccgtcgcccgggaaaattaaaaacattgggtttattc
THY01_0014_B03.b :
ITT01_0030_A12.b : ggaggatcgccagattctgccttccctggncggggttcagttcactaaatggggacagca
THY01_0092_F09.b : tgggggaagaatccccaaatct
THY01_0079_E03.b :
20110601C-014783 : ............................................................
---------+---------+---------+---------+---------+---------+ 970
DCI01_0017_C06.b : acaagggggaaagacccggatcctggggccttgaaacttttgaaaaaatgccctcccggg
THY01_0014_B03.b :
ITT01_0030_A12.b : aacccaatatgagtcagtgtcggccctggtggaacaatttagaaaaacgatcaggggttt
THY01_0092_F09.b :
THY01_0079_E03.b :
20110601C-014783 : ............................................................
---------+---------+---------+---------+---------+---------+ 970
DCI01_0017_C06.b : tacctttttggtgggaccccccttacccaaaaaatcccggggaattgaggccttctaaga
THY01_0014_B03.b :
ITT01_0030_A12.b : gaagtccaccccnaagtggaggaaaatgactgccggaactttcctgaaggcgccttggaa
THY01_0092_F09.b :
THY01_0079_E03.b :
20110601C-014783 : ............................................................
---------+---------+---------+---------+---------+---------+ 970
DCI01_0017_C06.b : aatatctcccccgggggcggggtctcgccccccccaaaaaaaaaaaaggnnnnnnnnngg
THY01_0014_B03.b :
ITT01_0030_A12.b : gatgacttttaggcaaacaataactggaccccccggcgacgagagattcccctgat
THY01_0092_F09.b :
THY01_0079_E03.b :
20110601C-014783 : ............................................................
---------+---------+---------+---------+---------+---------+ 970
DCI01_0017_C06.b : ttgtggnnatattgtgtctggcagt
THY01_0014_B03.b :
ITT01_0030_A12.b :
THY01_0092_F09.b :
THY01_0079_E03.b :