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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-014889

Length: 944

Sequence:  [FASTA format sequence]
GGTTAAACCC AAGAATGAAG AGCCATATGG GCACCTTAAT CCTAAGTGGA CCAAGTGGCT
ACAGAAGCTG TGCTGTCCTT GCTGCTTCGG CCGTGATTGC CTTGTCCTCA ACCAGGGCTA
TCTCTCAGAG GCAGGGGCCA GCCTGGTGGA CCAAAAACTG GAACTCAACA TTGTACCCCG
TACGAAGGTA GTATACCTGG CCAGTGAGAC CTTCAACTAT AGTGCCATTG ACCGAGTGAA
GTCCAGGGGC AAGCGGCTTG CACTCGAGAA AGTGCCAAAA GTTGGGCAGC GGTTTAACCG
AATTGGGCTA CCACCAAAGG TTGGTTCATT CCAGCTCTTT GTTGAAGGCT ACAAAGATGC
AGACTTCTGG CTAAGGCGTT TTGAAACAGA ACCTCTCCCT GAGAACACTA ACCGGCAACT
ACTGCTGCAG TTTGAGCGGC TGGTGGTGCT GGATTACATC ATCCGCAACA CTGATCGAGG
CAATGACAAC TGGCTGATTA AATATGACTG TCCAATGGAT AGTTCTAGCT CTCGGGACAC
AGACTGGGTG GTGGTGAAGG AGCCTGTTAT CAAGGTGGCT GCCATAGACA ATGGGCTGGC
TTTCCCCCTG AAGCATCCTG ACTCCTGGAG GGCATATCCT TTTTACTGGG CCTGGTTGCC
CCAGGCAAAA GTCCCATTCT CTCAGGAGAT CAAAGATCTG ATTCTTCCAA AGATATCGGA
CCCTAATTTC GTCAAGGACT TGGAGGAGGA CCTATATGAA CTCTTCAAGA AAGATCCCGG
TTTCGATAGG GGCCAGTTCC ATAAGCAGAT TGTCGTCATG CGGGGGCAGA TCCTAAATCT
GAGCCAGGCT CTGAAAGACA ACAAGAGTCC CCTGCACCTC GTCCAGATGC CACCTGTGAT
TGTCGAGACG GCCCGTTTCC CACCAGCGTC TGCTAGCGAG TCCT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		PI4K2A	phosphatidylinositol 4-kinase type 2-alpha [Homo sapiens].	632	0.0
		PI4K2B	phosphatidylinositol 4-kinase type 2-beta [Homo sapiens].	463	e-131

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Pi4k2a	phosphatidylinositol 4-kinase type 2-alpha [Mus musculus].	626	e-180
		Pi4k2b	phosphatidylinositol 4-kinase type 2-beta isoform 1 [Mus musculus].	464	e-131
		Pi4k2b	phosphatidylinositol 4-kinase type 2-beta isoform 2 [Mus musculus].	464	e-131

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC486824	PREDICTED: similar to phosphatidylinositol 4-kinase type II [Canis familiaris].	631	0.0

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		PI4K2A	phosphatidylinositol 4-kinase type 2-alpha [Bos taurus].	624	e-179
		PI4K2B	phosphatidylinositol 4-kinase type 2-beta [Bos taurus].	466	e-131

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		PI4K2A	PREDICTED: phosphatidylinositol 4-kinase type 2-alpha [Sus scrofa].	635	0.0
		PI4K2B	PREDICTED: phosphatidylinositol 4-kinase type 2-beta [Sus scrofa].	469	e-133

Alignment:      TOP

20110601C-014889 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
ADR01_0005_C11.b :                            nnnnnaactaacagcggtxxxxxxxxxxxxxxx
SPL01_0049_F01.b : nnnnnggctagtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLTL1_0096_G12.b :                                       nnnnaaaaatannnaanccgat
MLTL1_0091_C10.b :                                       nnnnnnnnnnnnnnnnnnnnnn


20110601C-014889 : ......................GGTTAAACCCAAGAATGAAGAGCCATATGGGCACCTTA
                   ---------+---------+---------+---------+---------+---------+ 38
ADR01_0005_C11.b : xxxxxxxxxxxxxxxxxxxxxxGGTTAAACCCAAGAATGAAGAGCCATATGGGCACCTTA
SPL01_0049_F01.b : xxxxxxxxxxxxxxxxxxxxxxttTTAAACCCAAGAATGAAGAGCCATATGGGCACCTTA
MLTL1_0096_G12.b : actatagggctxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLTL1_0091_C10.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-014889 : ATCCTAAGTGGACCAAGTGGCTACAGAAGCTGTGCTGTCCTTGCTGCTTCGGCCGTGATT
                   ---------+---------+---------+---------+---------+---------+ 98
ADR01_0005_C11.b : ATCCTAAGTGGACCAAGTGGCTACAGAAGCTGTGCTGTCCTTGCTGCTTCGGCCGTGATT
SPL01_0049_F01.b : ATCCTAAGTGGACCAAGTGGCTACAGAAGCTGTGCTGTCCTTGCTGCTTCGGCCGTGACT
MLTL1_0096_G12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLTL1_0091_C10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-014889 : GCCTTGTCCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCCAGCCTGGTGGACCAAAAAC
                   ---------+---------+---------+---------+---------+---------+ 158
ADR01_0005_C11.b : GCCTTGTCCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCCAGCCTGGTGGACCAAAAAC
SPL01_0049_F01.b : GCCTTGTCCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCCAGCCTGGTGGACCAAAAAC
MLTL1_0096_G12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGCAGGGGCCAGCCTGGTGGACCAAAAAC
MLTL1_0091_C10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGCAGGGGCCAGCCTGGTGGACCAAAAAC


20110601C-014889 : TGGAACTCAACATTGTACCCCGTACGAAGGTAGTATACCTGGCCAGTGAGACCTTCAACT
                   ---------+---------+---------+---------+---------+---------+ 218
ADR01_0005_C11.b : TGGAACTCAACATTGTACCCCGTACGAAGGTAGTATACCTGGCCAGTGAGACCTTCAACT
SPL01_0049_F01.b : TGGAACTCAACATTGTACCCCGTACGAAGGTAGTATACCTGGCCAGTGAGACCTTCAACT
MLTL1_0096_G12.b : TGGAACTCAACATTGTACCCCGTACGAAGGTAGTATACCTGGCCAGTGAGACCTTCAACT
MLTL1_0091_C10.b : TGGAACTCAACATTGTACCCCGTACGAAGGTAGTATACCTGGCCAGTGAGACCTTCAACT


20110601C-014889 : ATAGTGCCATTGACCGAGTGAAGTCCAGGGGCAAGCGGCTTGCACTCGAGAAAGTGCCAA
                   ---------+---------+---------+---------+---------+---------+ 278
ADR01_0005_C11.b : ATAGTGCCATTGACCGAGTGAAGTCCAGGGGCAAGCGGCTTGCACTCGAGAAAGTGCCAA
SPL01_0049_F01.b : ATAGTGCCATTGACCGAGTGAAGTCCAGGGGCAAGCGGCTTGCACTCGAGAAAGTGCCAA
MLTL1_0096_G12.b : ATAGTGCCATTGACCGAGTGAAGTCCAGGGGCAAGCGGCTTGCACTCGAGAATGTGCCAA
MLTL1_0091_C10.b : ATAGTGCCATTGACCGAGTGAAGTCCAGGGGCAAGCGGCTTGCACTCGAGAATGTGCCAA


20110601C-014889 : AAGTTGGGCAGCGGTTTAACCGAATTGGGCTACCACCAAAGGTTGGTTCATTCCAGCTCT
                   ---------+---------+---------+---------+---------+---------+ 338
ADR01_0005_C11.b : AAGTTGGGCAGCGGTTTAACCGAATTGGGCTACCACCAAAGGTTGGTTCATTCCAGCTCT
SPL01_0049_F01.b : AAGTTGGGCAGCGGTTTAACCGAATTGGGCTACCACCAAAGGTTGGTTCATTCCAGCTCT
MLTL1_0096_G12.b : AAGTTGGGCAGCGGTTTAACCGAATTGGGCTACCACCAAAGGTTGGTTCATTCCAGCTCT
MLTL1_0091_C10.b : AAGTTGGGCAGCGGTTTAACCGAATTGGGCTACCACCAAAGGTTGGTTCATTCCAGCTCT


20110601C-014889 : TTGTTGAAGGCTACAAAGATGCAGACTTCTGGCTAAGGCGTTTTGAAACAGAACCTCTCC
                   ---------+---------+---------+---------+---------+---------+ 398
ADR01_0005_C11.b : TTGTTGAAGGCTACAAAGATGCAGACTTCTGGCTAAGGCGTTTTGAAGCAGAACCTCTCC
SPL01_0049_F01.b : CTGTTGAAGGCTACAAAGATGCAGACCTCTGGCTAAGGCGTTTTGAAGCAGAACCTCTCC
MLTL1_0096_G12.b : TTGTTGAAGGCTACAAAGATGCAGACTTCTGGCTAAGGCGTTTTGAAACAGAACCTCTCC
MLTL1_0091_C10.b : TTGTTGAAGGCTACAAAGATGCAGACTTCTGGCTAAGGCGTTTTGAAACAGAACCTCTCC


20110601C-014889 : CTGAGAACACTAACCGGCAACTACTGCTGCAGTTTGAGCGGCTGGTGGTGCTGGATTACA
                   ---------+---------+---------+---------+---------+---------+ 458
ADR01_0005_C11.b : CTGAGAACACTAACCGGCAACTACTGCTGCAGTTTGAGCGGCTGGTGGTGCTGGATTACA
SPL01_0049_F01.b : CTGAGAACACTAACCGGCAACTACTGCTGCAGTTTGAGCGGCTGGTGGTGCTGGATTACA
MLTL1_0096_G12.b : CTGAGAACACTAACCGGCAACTACTGCTGCAGTTTGAGCGGCTGGTGGTGCTGGATTACA
MLTL1_0091_C10.b : CTGAGAACACTAACCGGCAACTACTGCTGCAGTTTGAGCGGCTGGTGGTGCTGGATTACA


20110601C-014889 : TCATCCGCAACACTGATCGAGGCAATGACAACTGGCTGATTAAATATGACTGTCCAATGG
                   ---------+---------+---------+---------+---------+---------+ 518
ADR01_0005_C11.b : TCATCCGCAACACTGATCGAGGCAATGACAACTGGCTGATTAAATATGACTGTCCAATGG
SPL01_0049_F01.b : CCATCCGCAACACTGATCGAGGCAATGACAACTGGCTGATTAAATATGACTGTCCAATGG
MLTL1_0096_G12.b : TCATCCGCAACACTGATCGAGGCAATGACAACTGGCTGATTAAATATGACTGTCCAATGG
MLTL1_0091_C10.b : TCATCCGCAACACTGATCGAGGCAATGACAACTGGCTGATTAAATATGACTGTCCAATGG


20110601C-014889 : ATAGTTCTAGCTCTCGGGACACAGACTGGGTGGTGGTGAAGGAGCCTGTTATCAAGGTGG
                   ---------+---------+---------+---------+---------+---------+ 578
ADR01_0005_C11.b : ATAGTTCTAGCTCTCGGGACACAGACTGGGTGGTGGTGAAGGAGCCTGTTATCAAGGTGG
SPL01_0049_F01.b : ATAGTTCTAGCTCTCGGGACACAGACTGGGTGGTGGTGAAGGAGCCTGTTATCAAGGTGG
MLTL1_0096_G12.b : ATAGTTCTAGCTCTCGGGACACAGACTGGGTGGTGGTGAAGGAGCCTGTTATCAAGGTGG
MLTL1_0091_C10.b : ATAGTTCTAGCTCTCGGGACACAGACTGGGTGGTGGTGAAGGAGCCTGTTATCAAGGTGG


20110601C-014889 : CTGCCATAGACAATGGGCTGGCTTTCCCCCTGAAGCATCCTGACTCCTGGAGGGCATATC
                   ---------+---------+---------+---------+---------+---------+ 638
ADR01_0005_C11.b : CTGCCATAGACAATGGGCTGGCTTTCCCCCTGAAGCATCCTGACTCCTGGAGGGCATATC
SPL01_0049_F01.b : CTGCCATAGACAATGGGCTGGCTTTCCCCCTGAAGCATCCTGACTCCTGGAGGGCATATC
MLTL1_0096_G12.b : CTGCCATAGACAATGGGCTGGCTTTCCCCCTGAAGCATCCTGACTCCTGGAGGGCATATC
MLTL1_0091_C10.b : CTGCCATAGACAATGGGCTGGCTTTCCCCCTGAAGCATCCTGACTCCTGGAGGGCATATC


20110601C-014889 : CTTTTTACTGGGCCTGGTTGCCCCAGGCAAAAGTCCCATTCTCTCAGGAGATCAAAGATC
                   ---------+---------+---------+---------+---------+---------+ 698
ADR01_0005_C11.b : CTTTTTACTGGGCCTGGTTGCCCCAGGCAAAAGTCCCATTCTCTCAGGAGATTCAAGATC
SPL01_0049_F01.b : CTTTTTACTGGGCCTGGTTGCCCCAGGCAAAAGTCCCATTCTCTCAGGAGATCAAAGATC
MLTL1_0096_G12.b : CTTTTTACTGGGCCTGGTTGCCCCAGGCAAAAGTCCCATTCTCTCANGAGATCAAAGATC
MLTL1_0091_C10.b : CTTTTTACTGGGCCTGGTTGCCCCAGGCAAAAGTCCCATTCTCTCAGGAGATCAAAGATC


20110601C-014889 : TGATTCTTCCAAAGATATCGGACCCTAATTTCGTCAAGGACTTGGAGGAGGACCTATATG
                   ---------+---------+---------+---------+---------+---------+ 758
ADR01_0005_C11.b : TGATTCTTCCAAAGATATCGGACCCTAATTTCGTCAAGGACTTGGAGGAGGACCTATATG
SPL01_0049_F01.b : TGATTCTTCCAAAGATATCGGACCCTAATTTCGTCAAGGACTTGGAGGAGGACCTATATG
MLTL1_0096_G12.b : TGATTCTTCCAAAGATATCGGACCCTAATTTCGTCAAGGACTTGGAGGAGGACCTATATG
MLTL1_0091_C10.b : TGATTCTTCCAAAGATATCGGACCCTAATTTCGTCAAGGACTTGGAGGAGGACCTATATG


20110601C-014889 : AACTCTTCAAGAAAGATCCCGGTTTCGATAGGGGCCAGTTCCATAAGCAGATTGTCGTCA
                   ---------+---------+---------+---------+---------+---------+ 818
ADR01_0005_C11.b : AACTCTTCAAGAAAGATCCCGGTTTCGATAGGGGCCAGTTCCCATAGCAGATTGCCGTCA
SPL01_0049_F01.b : AACTCTTTCAGAAAGATCCCCGGTTCGATAGGGGCCAGTTCCATAAGCAGATTGCCGTCA
MLTL1_0096_G12.b : AACTCTTTCAGAAAGATCCCGGTTTCGATAGGGGCCAGTTCCANTAGCAGATTGTCGTCA
MLTL1_0091_C10.b : AACTCTTCAAGAAAGATCCCGGTTTCGATAGGGGCCAGTTCCATAAGCAGATTGTCGTCA


20110601C-014889 : TGCGGGGGCAGATCCTAAATCTGAGCCAGGCTCTGAAAGACAACAAGAGTCCCCTGCACC
                   ---------+---------+---------+---------+---------+---------+ 878
ADR01_0005_C11.b : TGCGGGGGCAGATCCTAAATCTGAGCCAGGCTCTGAAAGACAACAAGAGTCCCCTGCACC
SPL01_0049_F01.b : CGCGGGGGCAGAATCCTAATCTGACCCAGGCTCTGAAAaaaacagaatcccctgcacctc
MLTL1_0096_G12.b : TGCGGGGGCAGATCCTAAATCTGAGCCAGGCTCTGAAAGACAACA*GAGTCCCCTGCACC
MLTL1_0091_C10.b : TGCGGGGGCAGATCCTAAATCTGAGCCCAGCTCTGAAAGACNACAAGAGTCCCCTGCACC


20110601C-014889 : TCGTCCAGATGCCACCTGTGATTGTCGAGACGGCCCGTTTCCCACCAGCGTCTGCTAGCG
                   ---------+---------+---------+---------+---------+---------+ 938
ADR01_0005_C11.b : TCGTCAagatgccacctgtgattgtcaagacggcccgttccaacagcggtctgctagcga
SPL01_0049_F01.b : gtccagatgccacctgtgattgtcgagacggccccttcccaccaacggtctggctaggaa
MLTL1_0096_G12.b : TCGTCagatgccactgtgatgtcgagacggcccgtcccacagcgtctgctagcaagtcta
MLTL1_0091_C10.b : TCGTCCAGATGCCACCTGTGATTGTCGAGACGGCCCGTTTCCCACCAGCGTCTGCTAGCG


20110601C-014889 : AGTCCT......................................................
                   ---------+---------+---------+---------+---------+---------+ 944
ADR01_0005_C11.b : gtcctacacgcagagctttcagagtcggaacccttcttttcgtggtggtaacctcgaggc
SPL01_0049_F01.b : atcctaaccgcaagctttccaagccgaagcccttctttttccggtggtaccctcaaagga
MLTL1_0096_G12.b : ccgcagagcttcaaagtcgagcccttctttctgtggtatctcaaagcaaatgaggctatg
MLTL1_0091_C10.b : AGTCCTacacgcagagcnttcagagtcggaagcccttctttcgtggtggtagtctcaaaa


20110601C-014889 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
ADR01_0005_C11.b : aaatgaagcatatgtctgaaacttgggcaagagaaacctggggagcggttgcaggaaatc
SPL01_0049_F01.b : aatgaagggcatatgtcctaaaaactggggcaggaggaacccgggggaat         
MLTL1_0096_G12.b : tctaaacttggccagaagaacccggggaccgttgcgggaacccnaaaacctatggaagca
MLTL1_0091_C10.b : gcaatgaaggcatattgtctgaaacttgggccaggagaaacctggggagcgggttgcaga


20110601C-014889 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
ADR01_0005_C11.b : caaaaaccttaggaaaacatgcccttcaagcctcctgttgcttgcccctctaaagcttcc
SPL01_0049_F01.b :                                                             
MLTL1_0096_G12.b : ggccttcaaacccccttgtggcttgccctcctaaagtttccaacccggaaaccaaccttg
MLTL1_0091_C10.b : aaacccnagaaccttatggaaagcatgccctttaaggcctcctgttggtttgccccttcc


20110601C-014889 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
ADR01_0005_C11.b : cagcacaggaaaaccaatcntggaaagttgtcttttggcctttaagtctggacggctgcc
SPL01_0049_F01.b :                                                             
MLTL1_0096_G12.b : ggactggggctttggcctttaagtgggaggggggccccgggggtaccattcccaaaggat
MLTL1_0091_C10.b : taaagttttccaacacaggaaaacacacccgggggaggtgtgctgttggccctttaagtg


20110601C-014889 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
ADR01_0005_C11.b : ccgggcttatcccattcccaagggtttcccttcccccctgggggggggggatcccttctc
SPL01_0049_F01.b :                                                             
MLTL1_0096_G12.b : tccttcccacctggggggggggaaacccccccgaacccctttggttttctattttgctaa
MLTL1_0091_C10.b : tgggagggggggctcgggcggtatcccatcccaaagaccccctttccatcccgggggggg


20110601C-014889 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
ADR01_0005_C11.b : gaacctgtcgtttattccttatttttaaaaaaaaaaaaaaaaagcgtgttttttgttccc
SPL01_0049_F01.b :                                                             
MLTL1_0096_G12.b : gaaaaaaaaaaaaaaaaaatggccccgcccagatttaatttttgccccccgaaaaaggat
MLTL1_0091_C10.b : ggaaaccccccccggacccggtgtttttctttttttgtcaaggaaaaaaaaaaaaaaagt


20110601C-014889 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
ADR01_0005_C11.b : tcttat                                                     
SPL01_0049_F01.b :                                                             
MLTL1_0096_G12.b : tttcaaacggagtgtttccaaaacccccccaaaagtttttaaactacccccc       
MLTL1_0091_C10.b : gccccgctccaatttaaattttggcgcgccgaaaaaaattttttaaatgtagtgttctaa


20110601C-014889 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
ADR01_0005_C11.b :                                                             
SPL01_0049_F01.b :                                                             
MLTL1_0096_G12.b :                                                             
MLTL1_0091_C10.b : cgcgccaaaaaggatttaaaaaanncccctntnnnnnnnnnccccccnaggagataaaat


20110601C-014889 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 944
ADR01_0005_C11.b :                                                             
SPL01_0049_F01.b :                                                             
MLTL1_0096_G12.b :                                                             
MLTL1_0091_C10.b : attagtaacatnnnnnnnnnnnnnnnnc