[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-015029
Length:
1,301
Sequence:
[FASTA format sequence]
ATGCTGATCC AGTTGAATTA TTTGAAATTC CAGTAAAGGA ATTAACATTT GACCAACTAC
AGTTGTTGAA GCTCACTCAT GTGACTGCAC TGAAATCTAA GGATCTGAAA GAATCTGTGG
TTGAGGAAGA AAATTCTCTT TCTGAAAATC AGCCATTTCC TTCTCTTAAG ATGGTTTTAG
AGTCTCTGCC AGAAGATGTA GGGTTTAACA TAGAAATAAA ATGGATCTGC CAACAAAGGG
ATGGAATGTG GGATGGTAAC TTATCAACAT ATTTTGACAT GAATATGTTT TTGGATATAA
TTTTAAAAAC TGTCTTGGAA AATTCTGGAA AAAGGAGGAT AGTGTTTTCT TCATTTGATG
CAGATATTTG CACAATGGTT CGGCAAAAGC AGAACAAATA TCCGATATTA TTTTTGACTC
AAGGGAAATC TGATATTTAC CCTGAACTCA TGGGCCTTAG ATCTCGGACA ACCCCCATTG
CAATGAGCTT TGCACAGTTT GAAAATCTAT TGGGGATTAA TGCACATACT GAAGACTTAC
TCAGAAACCC ATCCTATATT CAGGAGGCAA AAGCTAAGGG ACTGGTCATA TTCTGCTGGG
GTGATGATAC CAACGATCCT GAAAACAGAA AGAAATTAAA GGAACTGGGA GTTAATGGTC
TAATTTATGA TAGGATATAT GATTGGATGC CTGAACAGCC AAATATATTC CAAGTGGAGC
AGTTAGAACG CCTGAAGCAA GAACTGCCAG AGCTTAAGAG CTGTTTGTGC CCCACTGTTA
GTCGCTTTGT TCCCTCGTCC TTGTGTGGGG AGCCTGACAT CCATGTGGAT GCCAACAGCA
TTGACAATGT GGACAGTGCT TAGTATTTGC TGGGCAGGGA CCATTTAGGG CATGCACCGC
TGTTCTGGGT ATTCACTTTT CATCACTGAG CATTGTTTAT GCCTTTTAAG TTTTCAGCCC
AATGAAGCAA TAATGAAGTA TTTTACTATT TCACTACAAC TCTTGCTAGA ATTTCAAGTA
TGCTATTTGA ACCACTTGGC CAGGTATAAT TACCAGTTAG TCTCTCTACA TTGAGAAAAT
GTATTGGTAA ATATTTTAAA CTCAATATGT AAGTGTATAA TGTTAAACAA ATGTTTGTTA
AAAATGTAGC ACCTTGAAAT TAAACTATAA AGTATCTCAT ATTTCTACTT ATTACAGATT
TTCATTCGAT CAGGTCTGAA ATATTTAGCA CTTGAGGAAC ACGACTATGC ATAATTATAC
CTGACCCATA GAAAAAATAG TACCTCAAAT GCATGCATTT G
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | GPCPD1 | putative glycerophosphocholine phosphodiesterase GPCPD1 [Homo sapiens]. | 533 | e-151 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| Gpcpd1 | putative glycerophosphocholine phosphodiesterase GPCPD1 isoform 2 [Mus musculus]. | 518 | e-147 | |
|
| Gpcpd1 | putative glycerophosphocholine phosphodiesterase GPCPD1 isoform 2 [Mus musculus]. | 518 | e-147 | |
|
| Gpcpd1 | putative glycerophosphocholine phosphodiesterase GPCPD1 isoform 3 [Mus musculus]. | 407 | e-113 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC485778 | PREDICTED: similar to Protein KIAA1434 [Canis familiaris]. | 541 | e-154 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| GPCPD1 | PREDICTED: CG2818-like [Bos taurus]. | 543 | e-154 | |
|
| GPCPD1 | PREDICTED: CG2818-like [Bos taurus]. | 543 | e-154 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| GPCPD1 | PREDICTED: putative glycerophosphocholine phosphodiesterase GPCPD1 [Sus scrofa]. | 544 | e-155 |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||
20110601C-015029 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
AMP01_0050_B04.b : nnngggcaatatattgggatatcttxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0018_A09.b :
AMP01_0018_A10.b :
DCI01_0098_E08.b :
20110601C-015029 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
AMP01_0050_B04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0018_A09.b :
AMP01_0018_A10.b :
DCI01_0098_E08.b :
20110601C-015029 : ...................................................ATGCTGATC
---------+---------+---------+---------+---------+---------+ 9
AMP01_0050_B04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATGCTGATC
AMP01_0018_A09.b : nntttacgaaatctaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0018_A10.b : nntttacgaaaccaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0098_E08.b :
20110601C-015029 : CAGTTGAATTATTTGAAATTCCAGTAAAGGAATTAACATTTGACCAACTACAGTTGTTGA
---------+---------+---------+---------+---------+---------+ 69
AMP01_0050_B04.b : CAGTTGAATTATTTGAAATTCCAGTAAAGGAATTAACATTTGACCAACTACAGTTGTTGA
AMP01_0018_A09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AMP01_0018_A10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0098_E08.b :
20110601C-015029 : AGCTCACTCATGTGACTGCACTGAAATCTAAGGATCTGAAAGAATCTGTGGTTGAGGAAG
---------+---------+---------+---------+---------+---------+ 129
AMP01_0050_B04.b : AGCTCACTCATGTGACTGCACTGAAATCTAAGGATCTGAAAGAATCTGTGGTTGAGGAAG
AMP01_0018_A09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGATGAAG
AMP01_0018_A10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGAGGAAG
DCI01_0098_E08.b :
20110601C-015029 : AAAATTCTCTTTCTGAAAATCAGCCATTTCCTTCTCTTAAGATGGTTTTAGAGTCTCTGC
---------+---------+---------+---------+---------+---------+ 189
AMP01_0050_B04.b : AAAATTCTCTTTCTGAAAATCAGCCATTTCCTTCTCTTAAGATGGTTTTAGAGTCTCTGC
AMP01_0018_A09.b : AAAATTCTCTTTCTGAAAATCAGCCATTTCCTTCTCTTAAGATGGTTTTAGAGTCTCTGC
AMP01_0018_A10.b : AAAATTCTCTTTCTGAAAATCAGCCATTTCCTTCTCTTAAGATGGTTTTAGAGTCTCTGC
DCI01_0098_E08.b :
20110601C-015029 : CAGAAGATGTAGGGTTTAACATAGAAATAAAATGGATCTGCCAACAAAGGGATGGAATGT
---------+---------+---------+---------+---------+---------+ 249
AMP01_0050_B04.b : CAGAAGATGTAGGGTTTAACATAGAAATGAAATGGATCTGCCAACAAAGGGATGGAATGT
AMP01_0018_A09.b : CAGAAGATGTATGGTTTAACATATAAATAAAATGGATCTGCCAACAAAGGGATGGAATGT
AMP01_0018_A10.b : CAGAAGATGTAGGGTTTAACATAGAAATAAAATGGATCTGCCAACAAAGGGATGGAATGT
DCI01_0098_E08.b :
20110601C-015029 : GGGATGGTAACTTATCAACATATTTTGACATGAATATGTTTTTGGATATAATTTTAAAAA
---------+---------+---------+---------+---------+---------+ 309
AMP01_0050_B04.b : GGGATGGTAACTTATCAACATATTTTGACATGAATATGTTTTTGGATATAATTTTAAAAA
AMP01_0018_A09.b : GGGATGGTAACTTATCAACATATTTTGACATGAATATGTTTTTGGATATAATTTTAAAAA
AMP01_0018_A10.b : GGGATGGTAACTTATCAACATATTTTGACATGAATATGTTTTTGGATATAATTTTAAAAA
DCI01_0098_E08.b : nnnnccgatacttxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-015029 : CTGTCTTGGAAAATTCTGGAAAAAGGAGGATAGTGTTTTCTTCATTTGATGCAGATATTT
---------+---------+---------+---------+---------+---------+ 369
AMP01_0050_B04.b : CTGTCTTGGAAAATTCTGGAAAAAGGAGGATAGTGTTTTCTTCATTTGATGCAGATATTT
AMP01_0018_A09.b : CTGTCTTGGAAAATTCTGGAAAAAGGAGGATAGTGTTTTCTTCATTTGATGCAGATATTT
AMP01_0018_A10.b : CTGTCTTGGAAAATTCTGGAAAAAGGAGGATAGTGTTTTCTTCATTTGATGCAGATATTT
DCI01_0098_E08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-015029 : GCACAATGGTTCGGCAAAAGCAGAACAAATATCCGATATTATTTTTGACTCAAGGGAAAT
---------+---------+---------+---------+---------+---------+ 429
AMP01_0050_B04.b : GCACAATGGTTCGGCAAAAGCAGAACAAATATCCGATATTATTTTTGACTCAAGGGAAAT
AMP01_0018_A09.b : GCACAATGGTTCGGCAAAAGCAGAACAAATATCCGATATTATTTTTGACTCAAGGGAAAT
AMP01_0018_A10.b : GCACAATGGTTCGGCAAAAGCAGAACAAATATCCGATATTATTTTTGACTCAAGGGAAAT
DCI01_0098_E08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGGGAAAT
20110601C-015029 : CTGATATTTACCCTGAACTCATGGGCCTTAGATCTCGGACAACCCCCATTGCAATGAGCT
---------+---------+---------+---------+---------+---------+ 489
AMP01_0050_B04.b : CTGATATTTACCCTGAACTCATGGACCTTAGATCTCGGACAACCCCCATTGCAATGAGCT
AMP01_0018_A09.b : CTGATATTTACCCTGAACTCATGGGCCTTAGATCTCGGACAACCCCCATTGCAATGAGCT
AMP01_0018_A10.b : CTGATATTTACCCTGAACTCATGGGCCTTAGATCTCGGACAACCCCCATTGCAATGAGCT
DCI01_0098_E08.b : CTGATATTTACCCTGAACTCATGGACCTTAGATCTCGGACAACCCCCATTGCAATGAGCT
20110601C-015029 : TTGCACAGTTTGAAAATCTATTGGGGATTAATGCACATACTGAAGACTTACTCAGAAACC
---------+---------+---------+---------+---------+---------+ 549
AMP01_0050_B04.b : TTGCACAGTTTGAAAATCTATTGGGGATTAATGCACATACTGAAGACTTACTCAGAAACC
AMP01_0018_A09.b : TTGCACAGTTTGAAAATCTATTGGGGATTAATGCACATACTGAAGACTTACTCAGAAACC
AMP01_0018_A10.b : TTGCACAGTTTGAAAATCTATTGGGGATTAATGCACATACTGAAGACTTACTCAGAAACC
DCI01_0098_E08.b : TTGCACAGTTTGAAAATCTATTGGGGATTAATGCACATACTGAAGACTTACTCAGAAACC
20110601C-015029 : CATCCTATATTCAGGAGGCAAAAGCTAAGGGACTGGTCATATTCTGCTGGGGTGATGATA
---------+---------+---------+---------+---------+---------+ 609
AMP01_0050_B04.b : CATCCTATATTCAGGAGGCAAAAGCTAAGGGACTGGTCATATTCTGCTGGGGTGATGATA
AMP01_0018_A09.b : CATCCTATATTCAGGAGGCAAAAGCTAAGGGACTGGTCATATTCTGCTGGGGTGATGATA
AMP01_0018_A10.b : CATCCTATATTCAGGAGGCAAAAGCTAAGGGACTGGTCATATTCTGCTGGGGTGATGATA
DCI01_0098_E08.b : CATCCTATATTCAGGAGGCAAAAGCTAAGGGACTGGTCATATTCTGCTGGGGTGATGATA
20110601C-015029 : CCAACGATCCTGAAAACAGAAAGAAATTAAAGGAACTGGGAGTTAATGGTCTAATTTATG
---------+---------+---------+---------+---------+---------+ 669
AMP01_0050_B04.b : CCAACGATCCTGAAAACAGATAGAAATTAAAGGAACTGGGAGTTAATGGTCTAATTTATG
AMP01_0018_A09.b : CCAACGATCCTGAAAACAGAAAGAAATTAAAGGAACTGGGAGTTAATGGTCTAATTTATG
AMP01_0018_A10.b : CCAACGATCCTGAAAACAGAAAGAAATTAAAGGAACTGGGAGTTAATGGTCTAATTTATG
DCI01_0098_E08.b : CCAACGATCCTGAAAACAGAAAGAAATTAAAGGAACTGGGAGTTAATGGTCTAATTTATG
20110601C-015029 : ATAGGATATATGATTGGATGCCTGAACAGCCAAATATATTCCAAGTGGAGCAGTTAGAAC
---------+---------+---------+---------+---------+---------+ 729
AMP01_0050_B04.b : ATAGGATATATGATTGGATGCCTGAACAGCCAAATATATTCCGAGTGGAGCAGTTAGAAC
AMP01_0018_A09.b : ATAGGATATATGATTGGATGCCTGAACAGCCAAATATATTCCAAGTGGAGCAGTTAGAAC
AMP01_0018_A10.b : ATAGGATATATGATTGGATGCCTGAACAGCCAAATATATTCCAAGTGGAGCAGTTAGAAC
DCI01_0098_E08.b : ATAGGATATATGATTGGATGCCTGAACAGCCAAATATATTCCAAGTGGAGCAGTTAGAAC
20110601C-015029 : GCCTGAAGCAAGAACTGCCAGAGCTTAAGAGCTGTTTGTGCCCCACTGTTAGTCGCTTTG
---------+---------+---------+---------+---------+---------+ 789
AMP01_0050_B04.b : GCCTGAAGCAAGAACTGCCAGAGNCTTAGAGCTGTTTGTGCCCCACTGNTAGTCGCTTTG
AMP01_0018_A09.b : GCCTGAAGCAAGAACTGCCAGAGCTTAAGAGCTGTTTGTGCCCCACTGTTAGTCGCTTTG
AMP01_0018_A10.b : GCCTGAAGCAAGAACTGCCAGAGCTTAAGAGCTGTTTGTGCCCCACTGTTAGTCGCTTTG
DCI01_0098_E08.b : GCCTGAAGCAAGAACTGCCAGAGCTTAAGAGCTGTTTGTGCCCCACTGTTAGTCGCTTTG
20110601C-015029 : TTCCCTCGTCCTTGTGTGGGGAGCCTGACATCCATGTGGATGCCAACAGCATTGACAATG
---------+---------+---------+---------+---------+---------+ 849
AMP01_0050_B04.b : CTCCCTCGTCCT*GTGTGGGGAGCCTGACATCCATGTGGATGCCNACAGCATTGA*AATG
AMP01_0018_A09.b : TTCCCTCGTCCTTGTGTGGGGAGCCTGACNTCCATGTGGATGCCAACAGCATTGACAATG
AMP01_0018_A10.b : TTCCCTCGTCCTTGTGTGGGGAGCCTGACATCCATGTGGATGCCAACAGCATTGACAATG
DCI01_0098_E08.b : TTCCCTCGTCCTTGTGTGGGGAGCCTGACATCCATGTGGATGCCAACAGCATTGACAATG
20110601C-015029 : TGGACAGTGCTTAGTATTTGCTGGGCAGGGACCATTTAGGGCATGCACCGCTGTTCTGGG
---------+---------+---------+---------+---------+---------+ 909
AMP01_0050_B04.b : TGCACAGTGCTTANTATTTGCTGGGCAGGgacattnangncatgcnacgctggtctgggt
AMP01_0018_A09.b : TGGACAGTGCTTATTATTTGCTGGGCAGGAACCATTTAAGGCATGcaccgctgttcctgg
AMP01_0018_A10.b : TGGACAGTGCTTAGTATTTGCTGGGCAGGGACCATTTAGGGCATGCACCGCTGTTCTGGG
DCI01_0098_E08.b : TGGACAGTGCTTAGTATTTGCTGGGCAGGGACCATTTAGGGCATGCACCGCTGTTCTGGG
20110601C-015029 : TATTCACTTTTCATCACTGAGCATTGTTTATGCCTTTTAAGTTTTCAGCCCAATGAAGCA
---------+---------+---------+---------+---------+---------+ 969
AMP01_0050_B04.b : attcacttttctcactgagcattgttatgccttttagttttccgtccaaggagcaatagt
AMP01_0018_A09.b : tattcacttttctcactgaacattgtttatgcctttaagttttcagtccaatgaccaata
AMP01_0018_A10.b : TATTCACTTTTCtcactgaccatttttatgccttttaagttttcatcccatgaacaataa
DCI01_0098_E08.b : TATTCACTTTTCATCACTGAGCATTGTTTATGCCTTTTAAGTTTTCAGCCCAATGAAGCA
20110601C-015029 : ATAATGAAGTATTTTACTATTTCACTACAACTCTTGCTAGAATTTCAAGTATGCTATTTG
---------+---------+---------+---------+---------+---------+ 1029
AMP01_0050_B04.b : gagtattttctattccctccactctgctagaattcagtatgcatggaacgcttggcagga
AMP01_0018_A09.b : tgaangtatttactatttccttacacctctgctaaaatttaagtatgctatttaaaccct
AMP01_0018_A10.b : tgaagtattttacatttcactacactcttgtaaaatttcagttagctatttgacccttgg
DCI01_0098_E08.b : ATAATGAAGTATTTTACTATTTCACTACAACTCTTGCTAGAATTTCAAGTATGCTATTTG
20110601C-015029 : AACCACTTGGCCAGGTATAATTACCAGTTAGTCTCTCTACATTGAGAAAATGTATTGGTA
---------+---------+---------+---------+---------+---------+ 1089
AMP01_0050_B04.b : aaatacaattatcctcacatgaaaaaggttggtaattttaaccccaagggggggtaaagg
AMP01_0018_A09.b : ttgcccagattaataccagtttttctccctcattgaaaaatgatttggaaaaatttaaac
AMP01_0018_A10.b : cccggtataattacctttattcttctacattgaaaaatgattggtaaattttaaccccaa
DCI01_0098_E08.b : AACCACTTGGCCAGGTATAATTACCAGTTAGTCTCTCTACATTGAGAAAATGTATTGGTA
20110601C-015029 : AATATTTTAAACTCAATATGTAAGTGTATAATGTTAAACAAATGTTTGTTAAAAATGTAG
---------+---------+---------+---------+---------+---------+ 1149
AMP01_0050_B04.b : taccaagtttttaagctcc
AMP01_0018_A09.b : cccattgtaaggtaaaatgttaaaaatgttttgtaaattanccccttaattaacaaaaaa
AMP01_0018_A10.b : tttagttgtaatttaaacaatgtttgtaaaagttaccccttaaataaaaaaaaaatcccc
DCI01_0098_E08.b : AATATTTTAAACTCAATATGTAAGTGTATAATGTTAAACAAATGTTTGTTAAAAATGTAG
20110601C-015029 : CACCTTGAAATTAAACTATAAAGTATCTCATATTTCTACTTATTACAGATTTTCATTCGA
---------+---------+---------+---------+---------+---------+ 1209
AMP01_0050_B04.b :
AMP01_0018_A09.b : ttccaattttcctttttaaattttttttttaggtctaaatattacct
AMP01_0018_A10.b : atttccctttaaaatttttttatcaggcgaaaattt
DCI01_0098_E08.b : CACCTTGAAATTAAACTATAAAGTATCTCATATTTCTACTTATTACAGATTTTCATTCGA
20110601C-015029 : TCAGGTCTGAAATATTTAGCACTTGAGGAACACGACTATGCATAATTATACCTGACCCAT
---------+---------+---------+---------+---------+---------+ 1269
AMP01_0050_B04.b :
AMP01_0018_A09.b :
AMP01_0018_A10.b :
DCI01_0098_E08.b : TCAGGTCTGAAATATTTAGCACTTGAGGAACACGACTATGCATAATTATACCTGACCCAT
20110601C-015029 : AGAAAAAATAGTACCTCAAATGCATGCATTTG............................
---------+---------+---------+---------+---------+---------+ 1301
AMP01_0050_B04.b :
AMP01_0018_A09.b :
AMP01_0018_A10.b :
DCI01_0098_E08.b : AGAAAAAATAGTACCTCAAATGCATGCATTTGcactggtgatccnactgcacagatcttn
20110601C-015029 : ............................................................
---------+---------+---------+---------+---------+---------+ 1301
AMP01_0050_B04.b :
AMP01_0018_A09.b :
AMP01_0018_A10.b :
DCI01_0098_E08.b : gggccatctgaaaaatatgtattttttacatgggatgacatgccacctatacatttttca
20110601C-015029 : ............................................................
---------+---------+---------+---------+---------+---------+ 1301
AMP01_0050_B04.b :
AMP01_0018_A09.b :
AMP01_0018_A10.b :
DCI01_0098_E08.b : ttcntgtgaaccttaaggctgctgcggtctccccctaaaaaaancaatgccgggtgaacc
20110601C-015029 : ............................................................
---------+---------+---------+---------+---------+---------+ 1301
AMP01_0050_B04.b :
AMP01_0018_A09.b :
AMP01_0018_A10.b :
DCI01_0098_E08.b : cctcaggtgtccccaaaactgttataaactttcaaaagggttgcccaaatataaattcaa
20110601C-015029 : ............................................................
---------+---------+---------+---------+---------+---------+ 1301
AMP01_0050_B04.b :
AMP01_0018_A09.b :
AMP01_0018_A10.b :
DCI01_0098_E08.b : gcgcgcgggattttggtaaccacccaaacgggggtggaacttcccaacaacagggaaatt
20110601C-015029 : ............................................................
---------+---------+---------+---------+---------+---------+ 1301
AMP01_0050_B04.b :
AMP01_0018_A09.b :
AMP01_0018_A10.b :
DCI01_0098_E08.b : cttcgcggcggggtcccccggggtaatttccaacccgtcctggcggggggg
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