Assembly Information

[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name: 20110601C-015088

Sequence: [FASTA format sequence] GTTGACGCCA TCACCTCCGC ACCTGCCAAC ATGGAAGGTG ACGGCGGCGT AGCTGGGGCT GGTTTTAAGG CTCTGGGCTC TGCAACGGCT GCTGCGGCAG TCAGGGAGCT TCTGCAGGAC GAATGTTATA GTGATTTTTT AAATGAAGAC TTTGATGTAA AGACTTACAC TTCTCAATCT ATTCATCAAG CTGTAATTGC TGAACAACTA GCAAAACTTG CCCAGGGAAT CAGTCAGCTG GATAAAGAAC TACACCTACA GGTCGTTGCA AGACATGAAG ATTTATTGGC ACAAGCAACT GGGATTGAGT CTTTAGAAGG TGTTCTTCAA ATGATGCAGA CAAGAATTGG AGCTTTACAG GGAGCTGTTG ATAGGATGAA AGCAAAAATT GTTGAGCCAT ACAATAAAAT AGTAGCCCGT ACTGCTCAAC TAGCAAGACT TCAGGTTGCC TGTGATTTGC TTCGGAGAAT AATTCGAATC TTGTATCTCA GTAAGAGACT CCACGGACAA CTGCAGGGGG GGAGTAGAGA GATAACAAAA GCTGCTCAGA GTCTCAATGA ACTTGATTAT CTTTCTCAAG GAATAGATCT TTCTGGAATA GAAGTAATAG AAAATGATCT ACTTTTTATT GCAAGAGCTC GACTCGAAGT GGAAAATCAA GCTAAGCGCC TATTGGAGCA GGGTGTGGAA ACTCAGAATC CAACCCAGGT CGGAACAGCT CTTCAGGTTT TCCATAATCT TGGAACTTTG AAGGATACTT TTACCAGTGT CGTGGATGGA TATTGTGCTA CCATAGAAGA AAATATCAAC AGTGCGTTAG ACATCAAAGT TTTGACTCAG CCTTCCCAGT CAGCTCTGAG AGGGGGTCCT GGACGATCTA CGATGCCAAC GCCAGGAAAC ACTGCAGTGT TTCGTGCTTC CCTCTGGGAC AATATGGAGA AACCTGTGGA TCATATTTTT ACTGTTTGTG GCCAGGTACA ACATCTACAA AAAATA

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
COG5 conserved oligomeric Golgi complex subunit 5 isoform 3 [Homo sapiens]. 556 e-159

COG5 conserved oligomeric Golgi complex subunit 5 isoform 2 [Homo sapiens]. 556 e-159

COG5 conserved oligomeric Golgi complex subunit 5 isoform 1 [Homo sapiens]. 556 e-159

Locus	Definition	Score	E value
COG5	conserved oligomeric Golgi complex subunit 5 isoform 3 [Homo sapiens].	556	e-159
COG5	conserved oligomeric Golgi complex subunit 5 isoform 2 [Homo sapiens].	556	e-159
COG5	conserved oligomeric Golgi complex subunit 5 isoform 1 [Homo sapiens].	556	e-159

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
Cog5 conserved oligomeric Golgi complex subunit 5 [Mus musculus]. 531 e-151 O

		Locus	Definition	Score	E value	FL
		Cog5	conserved oligomeric Golgi complex subunit 5 [Mus musculus].	531	e-151	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
LOC483265 PREDICTED: similar to component of oligomeric golgi complex 5 isoform 1 [Canis familiaris]. 575 e-164

		Locus	Definition	Score	E value	FL
		LOC483265	PREDICTED: similar to component of oligomeric golgi complex 5 isoform 1 [Canis familiaris].	575	e-164

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL

Assembly Members: 4 TOP

Library Plate Loc. Read Name Accession Full Seq.

CBLT1 0073 F03 CBLT1_0073_F03.b HX216998
KDN01 0089 G04 KDN01_0089_G04.b FS677532
LVRM1 0140 A02 LVRM1_0140_A02.b BP448232 AK394281
PST01 0070 A01 PST01_0070_A01.b FS702327

SNPs: 2 TOP
Loc. Allele Individuals Freq. Type AA Change
Western Meishan
56 G 2 0 0.500 W N GGG/G
T 1 1 0.500 GTG/V
63 C 2 0 0.500 W S GGC/G
T 1 1 0.500 GGT/G

Alignment: TOP

20110601C-015088 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LVRM1_0140_A02.b : tagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CBLT1_0073_F03.b :        tttggcaagtagaggccgtaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
KDN01_0089_G04.b :                                                       ncctgc
PST01_0070_A01.b :                                                   ntttccctgc


20110601C-015088 : GTTGACGCCATCACCTCCGCACCTGCCAACATGGAAGGTGACGGCGGCGTAGCTGGGGCT
                   ---------+---------+---------+---------+---------+---------+ 60
LVRM1_0140_A02.b : GTTGACGCCATCACCTCCGCACCTGCCAACATGGAAGGTGACGGCGGCGTAGCTGTGGCT
CBLT1_0073_F03.b : xxxxxgGCCATCACCTCCGCACCTGCCAACATGGAAGGTGACGGCGGCGTAGCTGGGGCT
KDN01_0089_G04.b : gttggctatggataCTCCGCACCTGCCA*CATGGAAGGTGACGGCGGCGTAGCTGGGGCT
PST01_0070_A01.b : ggtggctctggaccCTCCGCACCTGCCAACATGGAAGGTGACGGCGGCGTAGCTGTGGCT


20110601C-015088 : GGTTTTAAGGCTCTGGGCTCTGCAACGGCTGCTGCGGCAGTCAGGGAGCTTCTGCAGGAC
                   ---------+---------+---------+---------+---------+---------+ 120
LVRM1_0140_A02.b : GGTTTTAAGGCTCTGGGCTCTGCAACGGCTGCTGCGGCAGTCAGGGAGCTTCTGCAGGAC
CBLT1_0073_F03.b : GGCTTTAAGGCTCTGGGCTCTGCAACGGCTGCTGCGGCAGTCAGGGAGCTTCTGCAGGAC
KDN01_0089_G04.b : GGCTTTAAGGCTCTGGGCTCTGCAACGGCTGCTGCGGCAGTCAGGGAGCTTCTGCAGGAC
PST01_0070_A01.b : GGTTTTAAGGCTCTGGGCTCTGCAACGGCTGCTGCGGCAGTCAGGGAGCTTCTGCAGGAC


20110601C-015088 : GAATGTTATAGTGATTTTTTAAATGAAGACTTTGATGTAAAGACTTACACTTCTCAATCT
                   ---------+---------+---------+---------+---------+---------+ 180
LVRM1_0140_A02.b : GAATGTTATAGTGATTTTTTAAATGAAGACTTTGATGTAAAGACTTACACTTCTCAATCT
CBLT1_0073_F03.b : GAATGTTATAGTGATTTTTTAAATGAAGACTTTGATGTAAAGACTTACACTTCTCAATCT
KDN01_0089_G04.b : GAATGTTATAGTGATTTTTTAAATGAAGACTTTGATGTAAAGACTTACACTTCTCAATCT
PST01_0070_A01.b : GAATGTTATAGTGATTTTTTAAATGAAGACTTTGATGTAAAGACTTACACTTCTCAATCT


20110601C-015088 : ATTCATCAAGCTGTAATTGCTGAACAACTAGCAAAACTTGCCCAGGGAATCAGTCAGCTG
                   ---------+---------+---------+---------+---------+---------+ 240
LVRM1_0140_A02.b : ATTCATCAAGCTGTAATTGCTGAACAACTAGCAAAACTTGCCCAGGGAATCAGTCAGCTG
CBLT1_0073_F03.b : ATTCATCAAGCTGTAATTGCTGAACAACTAGCAAAACTTGCCCAGGGAATCAGTCAGCTG
KDN01_0089_G04.b : ATTCATCAAGCTGTAATTGCTGAACAACTAGCAAAACTTGCCCAGGGAATCAGTCAGCTG
PST01_0070_A01.b : ATTCATCAAGCTGTAATTGCTGAACAACTAGCAAAACTTGCCCAGGGAATCAGTCAGCTG


20110601C-015088 : GATAAAGAACTACACCTACAGGTCGTTGCAAGACATGAAGATTTATTGGCACAAGCAACT
                   ---------+---------+---------+---------+---------+---------+ 300
LVRM1_0140_A02.b : GATAAAGAACTACACCTACAGGTCGTTGCAAGACATGAAGATTTATTGGCACAAGCAACT
CBLT1_0073_F03.b : GATAAAGAACTACACCTACAGGTCGTTGCAAGACATGAAGATTTATTGGCACAAGCAACT
KDN01_0089_G04.b : GATAAAGAACTACACCTACAGGTCGTTGCAAGACATGAAGATTTATTGGCACAAGCAACT
PST01_0070_A01.b : GATAAAGAACTACACCTACAGGTCGTTGCAAGACATGAAGATTTATTGGCACAAGCAACT


20110601C-015088 : GGGATTGAGTCTTTAGAAGGTGTTCTTCAAATGATGCAGACAAGAATTGGAGCTTTACAG
                   ---------+---------+---------+---------+---------+---------+ 360
LVRM1_0140_A02.b : GGGATTGAGTCTTTAGAAGGTGTTCTTCAAATGATGCAGACAAGAATTGGAGCTTTACAG
CBLT1_0073_F03.b : GGGATTGAGTCTTTAGAAGGTGTTCTTCAAATGATGCAGACAAGAATTGGAGCTTTACAG
KDN01_0089_G04.b : GGGATTGAGTCTTTAGAAGGTGTTCTTCAAATGATGCAGACAAGAATTGGAGCTTTACAG
PST01_0070_A01.b : GGGATTGAGTCTTTAGAAGGTGTTCTTCAAATGATGCAGACAAGAATTGGAGCTTTACAG


20110601C-015088 : GGAGCTGTTGATAGGATGAAAGCAAAAATTGTTGAGCCATACAATAAAATAGTAGCCCGT
                   ---------+---------+---------+---------+---------+---------+ 420
LVRM1_0140_A02.b : GGAGCTGTTGATAGGATGAAAGCAAAAATTGTTGAGCCATACAATAAAATAGTAGCCCGT
CBLT1_0073_F03.b : GGAGCTGTTGATAGGATGAAAGCAAAAATTGTTGAGCCATACAATAAAATAGTAGCCCGT
KDN01_0089_G04.b : GGAGCTGTTGATAGGATGAAAGCAAAAATTGTTGAGCCATACAATAAAATAGTAGCCCGT
PST01_0070_A01.b : GGAGCTGTTGATAGGATGAAAGCAAAAATTGTTGAGCCATACAATAAAATAGTAGCCCGT


20110601C-015088 : ACTGCTCAACTAGCAAGACTTCAGGTTGCCTGTGATTTGCTTCGGAGAATAATTCGAATC
                   ---------+---------+---------+---------+---------+---------+ 480
LVRM1_0140_A02.b : ACTGCTCAACTAGCAAGACTTCAGGTTGCCTGTGATTTGCCTCGGAGAATAATTCGAATC
CBLT1_0073_F03.b : ACTGCTCAACTAGCAAGACTTCAGGTTGCCTGTGATTTGCTTCGGAGAATAATTCGAATC
KDN01_0089_G04.b : ACTGCTCAACTAGCAAGACTTCAGGTTGCCTGTGATTTGCTTCGGAGAATAATTCGAATC
PST01_0070_A01.b : ACTGCTCAACTAGCAAGACTTCAGGTTGCCTGTGATTTGCTTCGGAGAATGATTCGAATC


20110601C-015088 : TTGTATCTCAGTAAGAGACTCCACGGACAACTGCAGGGGGGGAGTAGAGAGATAACAAAA
                   ---------+---------+---------+---------+---------+---------+ 540
LVRM1_0140_A02.b : TTGTATCTCAGTAAGAGACTCCACGGACAACTGCAGGGGGGGAGTAGAGAGATAACAAAA
CBLT1_0073_F03.b : TTGTATCTCAGTAAGAGACTCCACGGACAACTGCAGGGGGGGAGTAGAGAGATAACAAAA
KDN01_0089_G04.b : TTGTATCTCAGTAAGAGACTCCACGGACAACTGCAGGGGGGGAGTAGAGAGATAACAAAA
PST01_0070_A01.b : TTGTATCTCAGTAAGAGACTCCACGGACAACTGCAGGGGGGGAGTAGAGAGATAACAAAA


20110601C-015088 : GCTGCTCAGAGTCTCAATGAACTTGATTATCTTTCTCAAGGAATAGATCTTTCTGGAATA
                   ---------+---------+---------+---------+---------+---------+ 600
LVRM1_0140_A02.b : GCTGCTCAGAGTCTCAATGAACTTGATTATCTTTCTCAAGGAATAGATCTTTCTGGAATA
CBLT1_0073_F03.b : GCTGCTCAGAGTCTCAATGAACTTGATTATCTTTCTCAAGGAATAGATCTTTCTGGAATA
KDN01_0089_G04.b : GCTGCTCAGAGTCTCAATGAACTTGATTATCTTTCTCAAGGAATAGATCTTTCTGGAATA
PST01_0070_A01.b : GCTGCTCAGAGTCTCAATGAACTTGATTATCTTTCTCAAGGAATAGATCTTTCTGGAATA


20110601C-015088 : GAAGTAATAGAAAATGATCTACTTTTTATTGCAAGAGCT*CGACTCGAAGTGGAAAATCA
                   ---------+---------+---------+---------+---------+---------+ 659
LVRM1_0140_A02.b : GAAGTAATAGAAAATGATCTACTTTTTATTGCAAGAGCTTCGACTCGAAGTGGAAAATCA
CBLT1_0073_F03.b : GAAGTAATAGAAAATGATCTACTTTTTATTGCAAGAGCT*CGACTCGAAGTGGAAAATCA
KDN01_0089_G04.b : GAAGTAATAGAAAATGATCTACTTTTTATTGCAAGAGCT*CGACTCGAAGTGGAAAATCA
PST01_0070_A01.b : GAAGTAATAGAAAATGATCTACTTTTTATTGCAAGAGCT*CGACTCGAAGTGGAAAATCA


20110601C-015088 : AGCTAAGCGCCTATTGGAGCAGGGTGTGGAAACTCAGAATCCAACCCAGGTCGGAACAGC
                   ---------+---------+---------+---------+---------+---------+ 719
LVRM1_0140_A02.b : AGCTAAGCGCCTATTGGAGCAGGGTGTGGAAACTCAGAATCTCACCCANGTCGGAACAGC
CBLT1_0073_F03.b : AGCTAAGCGCCTATTGGAGCAGGGTGTGGAAACTCAGAATCCAACCCAGGTCGGAACAGC
KDN01_0089_G04.b : AGCTAGGCGCCTATTGGAGCAGGGTGTGGAAACTCAGAATCCAACCCAGGTCGGAACAGC
PST01_0070_A01.b : AGCTAAGCGCCTATTGGAGCAGGGTGTGGAAACTCAGAATCCAACCCAGGTCGGAACAGC


20110601C-015088 : TCTTCAGGTTTTCCATAATCTTGGAACTTTGAAGGATACTTTTACCAGTGTCGTGGATGG
                   ---------+---------+---------+---------+---------+---------+ 779
LVRM1_0140_A02.b : TCTTCAGGTTTTCCATAATCTTGGAACTTTGAaggatactattacc             
CBLT1_0073_F03.b : TCTTCAGGTTTTCCATAATCTTGGAACTTTGAggatactattaccattgtcgtgaatgga
KDN01_0089_G04.b : TCTTCAGGTTTTCCATAATCTTGGAACTTTGAAGGATACTTTTACCAGTGTCGTGGATGG
PST01_0070_A01.b : TCTTCAGGTTTTCCATAATCTTGGAACTTTGAAGGATACTATTACCAGTGTCGTGGATGG


20110601C-015088 : ATATTGTGCTACCATAGAAGAAAATATCAACAGTGCGTTAGACATCAAAGTTTTGACTCA
                   ---------+---------+---------+---------+---------+---------+ 839
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b : tattgtgctaccatagaaaaaattctcacagtgcgttagacatcaaagttttgactcagc
KDN01_0089_G04.b : ATATTGTGCTACCATAGAAGAAAATATCAACAGTGCGTTAGACATCAAAGTTTTGACTCA
PST01_0070_A01.b : ATATTGTGCTACCATAGAAGAAAATATCAACAGTGCGTTAGACATCAAAGTTTTGACTCA


20110601C-015088 : GCCTTCCCAGTCAGCTCTGAGAGGGGGTCCTGGACGATCTACGATGCCAACGCCAGGAAA
                   ---------+---------+---------+---------+---------+---------+ 899
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b : cttcccaattagctctgagaggggtcctggaaaatttccaagccaaccccggaaaacttg
KDN01_0089_G04.b : GCCTTCCCAGTCAGCTCTGAGAGGGGGTCCTGGACGATCTACGATGCCAACGCCAGGAAA
PST01_0070_A01.b : GCCTTCCCAGTCAGCTCTGAGAGGGGGTCCTGGACGATCTACGATGCCAACGCCAGGAAA


20110601C-015088 : CACTGCAGTGTTTCGTGCTTCCCTCTGGGACAATATGGAGAAACCTGTGGATCATATTTT
                   ---------+---------+---------+---------+---------+---------+ 959
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b : caggtttcgggcttcctctggaccaaatggaaaaacttggggatcaattttttacggttg
KDN01_0089_G04.b : CACTGCAGTGTTTCGTGCTTCCCTCNTGGACAATATGGAGAAACTTGTGGATCATATTTT
PST01_0070_A01.b : CACTGCAGTGTTTCGTGCTTCCCTCTGGGACAATATGGAGAAAACTGTGGATCATATTTT


20110601C-015088 : TACTGTTTGTGGCCAGGTACAACATCTACAAAAAATA.......................
                   ---------+---------+---------+---------+---------+---------+ 996
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b : ggggccgttcaaatccaaaaaatttttcccaaaaaaaaaatccgtcccccatttttttct
KDN01_0089_G04.b : TACTGTTTGTGGGCAGGTACAACATCTACAAAAAATAttaccaagaagagaaatctgtct
PST01_0070_A01.b : TACTGTTTGTGGCCAGGTACAACATCTACAAAAAATAtttacccaagagagagatcctgt


20110601C-015088 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 996
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b : ttaaaaaaatttaaggtgggacccggaatttttaaccctttggaatcgttttcaagcctt
KDN01_0089_G04.b : ctcactttgtttcatgaagaatagttaaggatgaactctgaaatttatacccttttggaa
PST01_0070_A01.b : ctctcacatttgtttcatgaaagaatagttaaggatggaccctcggaaatttatacccgt


20110601C-015088 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 996
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b : ttttcaaattcagaaaaaaaattttttttttttaaaacgtttgaaagaaaacccaaatat
KDN01_0089_G04.b : tcagtactcagcactttctctcatttcataagcacaaattcttcatgttttaaaatgcat
PST01_0070_A01.b : tttggaattcattactcaagcactttcttctcatttctaaagcaaccaatcctctatgtt


20110601C-015088 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 996
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b : gcgcctttataaagttggaacctctacacaaccccacttttcagaaattttttccgggag
KDN01_0089_G04.b : ggaaggaaaaacctaaataatgctgcttaaaagacttaggaacctcttcaaacccgccta
PST01_0070_A01.b : tttaaacctgcattgaaagaaaaaaccctaattattgcgtctttatatgaactagggaac


20110601C-015088 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 996
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b : tggaccctttgtgtttattagaagaaaaacacgatgttcttctaaagaccaattttcaaa
KDN01_0089_G04.b : atttcaggaaatttattcgctgaatgggaaccttttctattccaacctggaaagacacca
PST01_0070_A01.b : cgctttcaacaccagcctaatttttaaggaaattaattccctggaaatggaaactcttgt


20110601C-015088 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 996
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b : ggtgttgagcccaccccagggggttgtgaccactccccccgtataatttttttccggggg
KDN01_0089_G04.b : aagttttttccaaaaccgattttccaaaaggttttaaaccttaacctcgaggtgttttga
PST01_0070_A01.b : ggatttaaaccttggaaagaacccaaaggtgttttccaaaacccgaatttacaaaaggtt


20110601C-015088 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 996
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b : tcacctcta                                                  
KDN01_0089_G04.b : aaccttatccacctgacctaatggtttcccgggggaacccctcgggcagtgggtttaaat
PST01_0070_A01.b : tagagaccctaaacccaaggggttttggaaaaccttcccactggacctaaattggtttct


20110601C-015088 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 996
LVRM1_0140_A02.b :                                                             
CBLT1_0073_F03.b :                                                             
KDN01_0089_G04.b : agggagaatggccggttccccattgtgtaagggaaacacttggaagac           
PST01_0070_A01.b : cggggga