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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-015115

Length: 892

Sequence:  [FASTA format sequence]
CAATATGGCC GCTCCCAGCT GGGACGCGAG TGTTTGGGTT AGAGAGGCAG AGTACTCGGG
CGGCGGCAGT GGCGAGAGAG GAAGCTTTTG AGGGATTGTG AGGTTGAGGC TGGACGCTAC
ACAGCTGGAA CGGCCTGACC TTCCTGAGGG CGCCAATGGC AGGCAGCGTG GACGAGGAAG
CGCTGCACCA GCTGTACCTG TGGGTAGACA ACATCCCTCT GTCCCGGCCC AAAAGAAATC
TCTCTCGGGA CTTCAGTGAC GGAGTCCTGG TTGCAGAGGT CATCAAGTTT TATTTTCCCA
AGATGGCGGA GATGCACAAT TATGTCCCTG CCAACTCTCT CCAGCAGAAG CTGAGCAACT
GGGGTCACCT GAACAGGAAG GTGCTGAACA AATTGAACTT CTCGGTACCA GAGGATGTGA
TGCGTAAGAT CGCCCAGTGC GCCCCGGGTG TGGTGGAGCT GGTGCTCATT CCTCTGAGGC
AGCGCCTGGA GGAGCGGCAG AGGCGAAGGA AGCAGGGCAC AGGCTCCTTA CAGGAACTGG
CTCCCCAGGA TGGCACTGAC TACATGGATG TGGGTTTGTC CCAGAAGGCC CGAGGGGAAG
GTGCCCCAGA CCCCCAGGGA GGGGGACAGC TCAGGACAGG CCGGCTGCCT GGGCCCCGGC
CATCACCGGG GTATAGCCAG ACGCTTCAAG GCGACCCAAG CTTCGTCCTC CAGATCGCTG
AAAAGGAGCA GGAGCTGTTG GCTTCACAGG AGACTGTGCA GGTCCTGCAG ATGAAGGTGA
GACGCTTGGA GCACTTGCTC CAGCTCAAGA ACGTGCGCAT CGAAGACCTT TCCAGGCGGC
TCCAGCAGGC GGAGCGTAAG CAGCGGTGAG CCGAGGTCCC GACCTCCTGG GG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		SPEF1	sperm flagellar protein 1 [Homo sapiens].	401	e-112	O
		SPATA4	spermatogenesis-associated protein 4 [Homo sapiens].	67	2e-11	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Spef1	sperm flagellar protein 1 [Mus musculus].	374	e-104	O
		6430531B16Rik	hypothetical protein LOC381933 [Mus musculus].	125	6e-29	O
		Spata4	spermatogenesis-associated protein 4 [Mus musculus].	63.5	2e-10	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC485792	PREDICTED: similar to Protein C20orf28 homolog [Canis familiaris].	417	e-117	O
		LOC609025	PREDICTED: similar to spermatogenesis associated 4 [Canis familiaris].	55.1	9e-08	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		SPEF1	sperm flagellar protein 1 [Bos taurus].	413	e-116	O
		SPATA4	spermatogenesis-associated protein 4 [Bos taurus].	61.6	9e-10	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		SPEF1	sperm flagellar protein 1 [Sus scrofa].	443	e-125	O
		LOC100622696	PREDICTED: sperm flagellar protein 1-like [Sus scrofa].	154	6e-38	O
		SPATA4	spermatogenesis-associated protein 4 [Sus scrofa].	63.9	1e-10	O

Alignment:      TOP

20110601C-015115 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
UTR01_0005_F11.b :              txxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
UTR01_0006_F11.b :                 ggataacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0012_F06.b : cgaaacatttxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0036_E01.b :                                                            c


20110601C-015115 : ...............................................CAATATGGCCGCT
                   ---------+---------+---------+---------+---------+---------+ 13
UTR01_0005_F11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAATATGGCCGCT
UTR01_0006_F11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxcaaTATGGCCGCT
OVR01_0012_F06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGGCCGCT
OVR01_0036_E01.b : gaggcttacgtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-015115 : CCCAGCTGGGACGCGAGTGTTTGGGTTAGAGAGGCAGAGTACTCGGGCGGCGGCAGTGGC
                   ---------+---------+---------+---------+---------+---------+ 73
UTR01_0005_F11.b : CCCAGCTGGGACGCGAGTGTTTGGGTTAGAGAGGCAGAGTACTCGGGCGGCGGCAGTGGC
UTR01_0006_F11.b : CCCAGCTGGGACGCGAGTGTTTGGGTTAGAGAGGCAGAGTACTCGGGCGGCGGCAGTGGC
OVR01_0012_F06.b : CCCAGCTGGGACGCGAGTGTTTGGGTTAGAGAGGCAGAGTACTCGGGCGGCGGCAGTGGC
OVR01_0036_E01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxGAGAGGCAGAGTACTCGGGCGGCGGCAGTGGC


20110601C-015115 : GAGAGAGGAAGCTTTTGAGGGATTGTGAGGTTGAGGCTGGACGCTACACAGCTGGAACGG
                   ---------+---------+---------+---------+---------+---------+ 133
UTR01_0005_F11.b : GAGAGAGGAAGCTTTTGAGGGATTGTGAGGTTGAGGCTGGACGCTACACAGCTGGAACGG
UTR01_0006_F11.b : GAGAGAGGAAGCTTTTGAGGGATTGTGAGGTTGAGGCTGGACGCTACACAGCTGGAACGG
OVR01_0012_F06.b : GAGAGAGGAAGCTTTTGAGGGATTGTGAGGTTGAGGCTGGACGCTACACAGCTGGAACGG
OVR01_0036_E01.b : GAGAGAGGAAGCTTTTGAGGGATTGTGAGGTTGAGGCTGGACGCTACACAGCTGGAACGG


20110601C-015115 : CCTGACCTTCCTGAGGGCGCCAATGGCAGGCAGCGTGGACGAGGAAGCGCTGCACCAGCT
                   ---------+---------+---------+---------+---------+---------+ 193
UTR01_0005_F11.b : CCTGACCTTCCTGAGGGCGCCAATGGCAGGCAGCGTGGACGAGGAAGCGCTGCACCAGCT
UTR01_0006_F11.b : GCTGACCTTCCTGAGGGCGCCAATGGCAGGCAGCGTGGACGAGGAAGCGCTGCACCAGCT
OVR01_0012_F06.b : CCTGACCTTCCTGAGGGCGCCAATGGCAGGCAGCGTGGACGAGGAAGCGCTGCACCAGCT
OVR01_0036_E01.b : CCTGACCTTCCTGAGGGCGCCAATGGCAGGCAGCGTGGACGAGGAAGCGCTGCACCAGCT


20110601C-015115 : GTACCTGTGGGTAGACAACATCCCTCTGTCCCGGCCCAAAAGAAATCTCTCTCGGGACTT
                   ---------+---------+---------+---------+---------+---------+ 253
UTR01_0005_F11.b : GTACCTGTGGGTAGACAACATCCCTCTGTCCCGGCCCAAAAGAAATCTCTCTCGGGACTT
UTR01_0006_F11.b : GTACCTGTGGGTAGACAACATCCCTCTGTCCCGGCCCAAAAGAAATCTCTCTCGGGACTT
OVR01_0012_F06.b : GTACCTGTGGGTAGACAACATCCCTCTGTCCCGGCCCAAAAGAAATCTCTCTCGGGACTT
OVR01_0036_E01.b : GTACCTGTGGGTAGACAACATCCCTCTGTCCCGGCCCAAAAGAAATCTCTCTCGGGACTT


20110601C-015115 : CAGTGACGGAGTCCTGGTTGCAGAGGTCATCAAGTTTTATTTTCCCAAGATGGCGGAGAT
                   ---------+---------+---------+---------+---------+---------+ 313
UTR01_0005_F11.b : CAGTGACGGAGTCCTGGTTGCAGAGGTCATCAAGTTTTATTTTCCCAAGATGGCGGAGAT
UTR01_0006_F11.b : CAGTGACGGAGTCCTGGTTGCAGAGGTCATCAAGTTTTATTTTCCCAAGATGGCGGAGAT
OVR01_0012_F06.b : CAGTGACGGAGTCCTGGTTGCAGAGGTCATCAAGTTTTATTTTCCCAAGATGGTGGAGAT
OVR01_0036_E01.b : CAGTGACGGAGTCCTGGTTGCAGAGGTCATCAAGTTTTATTTTCCCAAGATGGTGGAGAT


20110601C-015115 : GCACAATTATGTCCCTGCCAACTCTCTCCAGCAGAAGCTGAGCAACTGGGGTCACCTGAA
                   ---------+---------+---------+---------+---------+---------+ 373
UTR01_0005_F11.b : GCACAATTATGTCCCTGCCAACTCTCTCCAGCAGAAGCTGAGCAACTGGGGTCACCTGAA
UTR01_0006_F11.b : GCACAATTATGTCCCTGCCAACTCTCTCCAGCAGAAGCTGAGCAACTGGGGTCACCTGAA
OVR01_0012_F06.b : GCACAATTATGTCCCTGCCAACTCTCTCCAGCAGAAGCTGAGCAACTGGGGTCACCTGAA
OVR01_0036_E01.b : GCACAATTATGTCCCTGCCAACTCTCTCCAGCAGAAGCTGAGCAACTGGGGTCACCTGAA


20110601C-015115 : CAGGAAGGTGCTGAACAAATTGAACTTCTCGGTACCAGAGGATGTGATGCGTAAGATCGC
                   ---------+---------+---------+---------+---------+---------+ 433
UTR01_0005_F11.b : CAGGAAGGTGCTGAACAAATTGAACTTCTCGGTACCAGAGGATGTGATGCGTAAGATCGC
UTR01_0006_F11.b : CAGGAAGGTGCTGAACAAATTGAACTTCTCGGTACCAGAGGATGTGATGCGTAAGATCGC
OVR01_0012_F06.b : CAGGAAGGTGCTGAACAAATTGAACTTCTCGGTACCAGAGGATGTGATGCGTAAGATCGC
OVR01_0036_E01.b : CAGGAAGGTGCTGAACAAATTGAACTTCTCGGTACCAGAGGATGTGATGCGTAAGATCGC


20110601C-015115 : CCAGTGCGCCCCGGGTGTGGTGGAGCTGGTGCTCATTCCTCTGAGGCAGCGCCTGGAGGA
                   ---------+---------+---------+---------+---------+---------+ 493
UTR01_0005_F11.b : CCAGTGCGCCCCGGGTGTGGTGGAGCTGGTGCTCATTCCTCTGAGGCAGCGCCTGGAGGA
UTR01_0006_F11.b : CCAGTGCGCCCCGGGTGTGGTGGAGCTGGTGCTCATTCCTCTGAGGCAGCGCCTGGAGGA
OVR01_0012_F06.b : CCAGTGCGCCCCGGGTGTGGTGGAGCTGGTGCTCATTCCTCTGAGGCAGCGCCTGGAGGA
OVR01_0036_E01.b : CCAGTGCGCCCCGGGTGTGGTGGAGCTGGTGCTCATTCCTCTGAGGCAGCGCCTGGAGGG


20110601C-015115 : GCGGCAGAGGCGAAGGAAGCAGGGCACAGGCTCCTTACAGGAACTGGCTCCCCAGGATGG
                   ---------+---------+---------+---------+---------+---------+ 553
UTR01_0005_F11.b : GCGGCAGAGGCGAAGGAAGCAGGGCACAGGCTCCTTACAGGAACTGGCTCCCCAGGATGG
UTR01_0006_F11.b : GCGGCAGAGGCGAAGGAAGCAGGGCACAGGCTCCTTACAGGAACTGGCTCCCCAGGATGG
OVR01_0012_F06.b : GCGGCAGAGGCGAAGGAAGCAGGGCACAGGCTCCTTACAGGAACTGGCTCCCCAGGATGG
OVR01_0036_E01.b : GCGGCAGAGGCGAAGGAAGCAGGGCACAGGCTCCTTACAGGAACTGGCTCCCCAGGATGG


20110601C-015115 : CACTGACTACATGGATGTGGGTTTGTCCCAGAAGGCCCGAGGGGAAGGTGCCCCAGACCC
                   ---------+---------+---------+---------+---------+---------+ 613
UTR01_0005_F11.b : CACTGACTACATGGATGTGGGTTTGTCCCAGAAGGTCCCAGGGGAAGGTGCCCCAGACCC
UTR01_0006_F11.b : CACTGACTACATGGATGTGGGTTTGTCCCAGAAGGTCCCAGGGGAAGGTGCCCCAGACCC
OVR01_0012_F06.b : CACTGACTACATGGATGTGGGTTTGTCCCAGAAGGCCCGAGGGGAAGGTGCCCCAGACCC
OVR01_0036_E01.b : CACTGACTACATGGATGTGGGTTTGTCCCAGAAGGCCCGAGGGGAAGGTGCCCCAGACCC


20110601C-015115 : CCAGGGAGGGGGACAGCTCAGGACAGGCCGGCTGCCTGGGCCCCGGCCATCACCGGGGTA
                   ---------+---------+---------+---------+---------+---------+ 673
UTR01_0005_F11.b : CCAGGGAGGGGGACAGCTCAGGACAGGCCGGCTGCCTGGGCCCCGGCCATCACCGGGGTA
UTR01_0006_F11.b : CCAGGGAGGGGGACAGCTCAGGACAGGCCGGCTGCCTGGGCCCCGGCCATCACCGGGGTA
OVR01_0012_F06.b : CCAGGGAGGGGGACAGCTCAGGACAGGCCGGCTGCCTGGGCCCCGGCCATCACCGGGGTA
OVR01_0036_E01.b : CCAGGGAGGGGGACAGCTCAGGACAGGCCGGCTGCCTGGGCCCCGGCCATCACCGGGGTA


20110601C-015115 : TAGCCAGACGCTTCAAGGCGACCCAAGCTTCGTCCTCCAGATCGCTGAAAAGGAGCAGGA
                   ---------+---------+---------+---------+---------+---------+ 733
UTR01_0005_F11.b : TAGCCAGACGCTTCAAGGCGACCCAAGCTTCGTCCTCCAGATCGCTGAAAAGGAGCAGGA
UTR01_0006_F11.b : TAGCCAGACGCTTCAAGGCGACCCCAGCTTCGTCCTCCAGATCGCTGAAAAGGAGCAGGA
OVR01_0012_F06.b : TAGCCAGACGCTTCAAGGCGACCCAAGCTTCGTCCTCCAGATCGCTGAAAAGGAGCAGGA
OVR01_0036_E01.b : TAGCCAGACGCTTCAAGGCGACCCAAGCTTCGTCCTCCAGATCGCTGAAAAGGAGCAGGA


20110601C-015115 : GCTGTTGGCTTCACAGGAGACTGTGCAGGTCCTGCAGATGAAGGTGAGACGCTTGGAGCA
                   ---------+---------+---------+---------+---------+---------+ 793
UTR01_0005_F11.b : GCTGTTGGCTTCACAGGAGACTGTGCAGGTCCTGCAGATGAAGGTGAGACGCTTGGAGCA
UTR01_0006_F11.b : GCTGTTGGCTTCACAGGAGACT                                     
OVR01_0012_F06.b : GCTGTTGGCTTCACAGGAGACTGTGCAGGTCCTGCAGATGAAGGTGAGACGCTTGGAGCA
OVR01_0036_E01.b : GCTGTTGGCTTCACAGGAGACTGTGCAGGTCCTGCAGATGAAGGTGAGACGCTTGGAGCA


20110601C-015115 : CTTGCTCCAGCTCAAGAACGTGCGCATCGAAGACCTTTCCAGGCGGCTCCAGCAGGCGGA
                   ---------+---------+---------+---------+---------+---------+ 853
UTR01_0005_F11.b : CTTGCTCCAGCTCAAGAACGTGCGCATCGAAGACCTTTCCAGGCGGCTCCAGCAGGCGGA
UTR01_0006_F11.b :                                                             
OVR01_0012_F06.b : CTTGCTCCAGCTCAAGAACGTGCGCATCGAAGACCTTTCCAGGCGGCTCCCGCAGGCGGA
OVR01_0036_E01.b : CTTGCTCCAGCTCAAGAACGTGCGCATCGAAGACCTTTCCAGGCGGCTCCAGCAGGCGGA


20110601C-015115 : GCGTAAGCAGCGGTGAGCCGAGGTCCCGACCTCCTGGGG.....................
                   ---------+---------+---------+---------+---------+---------+ 892
UTR01_0005_F11.b : GCGTA                                                      
UTR01_0006_F11.b :                                                             
OVR01_0012_F06.b : GCGTAAGCAGCGGTGAGCCCAGGTCCCGACCTCCTGGGGacatcctcatatccacccagg
OVR01_0036_E01.b : GCGTAACCAGCGGTGAGCCGAGGTCCCGACCTCCTGGGGacatcctcatatcccaccagg


20110601C-015115 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 892
UTR01_0005_F11.b :                                                             
UTR01_0006_F11.b :                                                             
OVR01_0012_F06.b : ccccaaatgccaccaccgacccacccccgcacccgacgaccgatggcccggaagagaccg
OVR01_0036_E01.b : cccagatgccacaaccgacacacccacgcaccgacggaacgatggtcaagatgagaccgc


20110601C-015115 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 892
UTR01_0005_F11.b :                                                             
UTR01_0006_F11.b :                                                             
OVR01_0012_F06.b : cggctccccgggagcctccttggaaccccaaccgccccctcttcccttgggggggtaggt
OVR01_0036_E01.b : ggctcccgtggagcctctgggaacacaaccgccccttttcctttgggtgtaagggaaacg


20110601C-015115 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 892
UTR01_0005_F11.b :                                                             
UTR01_0006_F11.b :                                                             
OVR01_0012_F06.b : gaccgggggggggatggtggggaccgggaatcctccccaagtaaaacccccaaaaactgg
OVR01_0036_E01.b : tgggggggaaaggggggaacgggaaatccccccaattaaaacccccaaaacttgaccccg


20110601C-015115 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 892
UTR01_0005_F11.b :                                                             
UTR01_0006_F11.b :                                                             
OVR01_0012_F06.b : accccccttcccttttcttcttccttctgggggtccgggggggaagggaccctggctttt
OVR01_0036_E01.b : ccttcctttctactccccttctgggggtcagggggggaagggaactggcttttcccaaaa


20110601C-015115 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 892
UTR01_0005_F11.b :                                                             
UTR01_0006_F11.b :                                                             
OVR01_0012_F06.b : ccccaaaaacccctaaaaaacccc                                   
OVR01_0036_E01.b : acccttaaaaacccccccattttccaaaaaaaaccccctgccctttgcccaccccccccc


20110601C-015115 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 892
UTR01_0005_F11.b :                                                             
UTR01_0006_F11.b :                                                             
OVR01_0012_F06.b :                                                             
OVR01_0036_E01.b : caaaaaaaaaaatttttttgcccccc