[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-015154
Length:
1,064
Sequence:
[FASTA format sequence]
GAAGAGAGCA GGATGGCGGC GCTGGACAGT GACAGCGACG AGGACTTGGT CACCTATGGG
ACGGGCCTGG AGCCGCTGGA AGAAGGTGAA AGACCAAAGA AGCCAATTCC TCTTCAGGAT
CAGACCGTCA GGGATGAAAA AGGAAGGTAT AAACGATTTC ATGGAGCCTT TAGTGGAGGT
TTCTCTGCTG GTTACTTCAA CACTGTTGGC TCAAAAGAAG GATGGACACC GTCTTCCTTC
GTGTCTTCGC GACAGAACAG AGCAGACAAA TCTGTTCTTG GTCCTGAAGA TTTTATGGAT
GAAGAGGATC TTAGTGAATT TGGGATAGCA CCTAAAGCGA TTGTCACCAC AGACGATTTT
GCTTCTAAAA CCAAAGATAG AATCCGAGAA AAAGCCAGAC AGTTAGCAGC TGCTACTGCC
CCAATTCCTG GAGCCACTCT GCTTGATGAC CTCATAACAC CTGCAAAATT ATCTGTTGGT
TTTGAATTGC TAAGAAAAAT GGGTTGGAAG GAAGGACAAG GAATTGGACC TCGAGTAAAG
AGGAGACCAC GCCGACAAAA GCCTGATCCT GGAGTAAAAA TCTATGGCTG CGCATTACCC
CCTGGAGGCT CCGAAGACTC TGAGGATGAA GATGATGACT ACTTGCCGGA AAATGTGACC
TTTGCACCCA AAGATGTCAC ACCTGTGGAT TTCACACCTA AAGATAATGT ACACGGACTG
GCTTACAAGG GCCTGGATCC CCACCAAGCA CTGTTTGGAA CTTCAGGAGA ACATTTTAAT
CTTTTCAGCG GAGGACCCGA GGGGACCAGC AATCTTCTTG GGGATATTGG AGTGAATAAA
GGAAGGAAAT TGGGAATTTC AGGCCAGGCT TTTGGTGTAG GTGCCCTGGA AGAGGAAGAC
GATGACATCT ATGCCACAGA AACTCTGTCC AAGTATGATA CCGTTTTGGA GGACGAGGAA
CCTGGAGATG GGCTCTATGG CTGGACAGCA CCCCAAGGAT ATAAAAGTCA GAAAGAATCA
GAGAAAGACT TCGCTATGTT GGCAAAATTT TGGATGGATT TTCT
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | GPATCH1 | G patch domain-containing protein 1 [Homo sapiens]. | 575 | e-164 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| Gpatch1 | G patch domain-containing protein 1 [Mus musculus]. | 572 | e-163 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC476495 | PREDICTED: similar to G patch domain containing 1 isoform 3 [Canis familiaris]. | 592 | e-169 | O |
|
| LOC476495 | PREDICTED: similar to G patch domain containing 1 isoform 2 [Canis familiaris]. | 592 | e-169 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| GPATCH1 | G patch domain-containing protein 1 [Bos taurus]. | 598 | e-171 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC100525924 | PREDICTED: G patch domain-containing protein 1-like, partial [Sus scrofa]. | 111 | 6e-25 | O |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||
20110601C-015154 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
UTR01_0009_C07.b : cttatxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0048_E11.b : aaggcttttggttgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
KDN01_0075_C10.b :
BFLT1_0032_E04.b :
20110601C-015154 : ............................GAAGAGAGCAGGATGGCGGCGCTGGACAGTGA
---------+---------+---------+---------+---------+---------+ 32
UTR01_0009_C07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAGAGAGCAGGATGGCGGCGCTGGACAGTGA
OVR01_0048_E11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAGAGAGCAGGATGGCGGCGCTGGACAGTGA
KDN01_0075_C10.b : ttcctgctgtggctatggaggaGGCGGCGCTGGACAGTGA
BFLT1_0032_E04.b :
20110601C-015154 : CAGCGACGAGGACTTGGTCACCTATGGGACGGGCCTGGAGCCGCTGGAAGAAGGTGAAAG
---------+---------+---------+---------+---------+---------+ 92
UTR01_0009_C07.b : CAGCGACGAGGACTTGGTCACCTATGGGACGGGCCTGGAGCCGCTGGAAGAAGGTGAAAG
OVR01_0048_E11.b : CAGCGACGAGGACTTGGTCACCTATGGGACGGGCCTGGAGCCGCTGGAAGAAGGTGAAAG
KDN01_0075_C10.b : CAGCGACGAGGACTTGGTCACCTATGGCACTGGCCTGGAGCCGCTGGAAGAAGGTGAAAG
BFLT1_0032_E04.b :
20110601C-015154 : ACCAAAGAAGCCAATTCCTCTTCAGGATCAGACCGTCAGGGATGAAAAAGGAAGGTATAA
---------+---------+---------+---------+---------+---------+ 152
UTR01_0009_C07.b : ACCAAAGAAGCCAATTCCTCTTCAGGATCAGACCGTCAGGGATGAAAAAGGAAGGTATAA
OVR01_0048_E11.b : ACCAAAGAAGCCAATTCCTCTTCAGGATCAGACCGTCGGGGATGAAAAAGGAAGGTATAA
KDN01_0075_C10.b : ACCAAAGAACCCAATTCCTCTTCAGGATCAGACCGTCAGGGATGAAAAAGGAAGGTATAA
BFLT1_0032_E04.b : ggaatccgttagctgtcngxxxx
20110601C-015154 : ACGATTTCATGGAGCCTTTAGTGGAGGTTTCTCTGCTGGTTACTTCAACACTGTTGGCTC
---------+---------+---------+---------+---------+---------+ 212
UTR01_0009_C07.b : ACGATTTCATGGAGCCTTTAGTGGAGGTTTCTCTGCTGGTTACTTCAACACTGTTGGCTC
OVR01_0048_E11.b : ACGATTTCATGGAGCCTTTAGTGGAGGTTTCTCTGCTGGTTACTTCAACACTGTTGGCTC
KDN01_0075_C10.b : ACGATTTCATGGAGCCTTTAGTGGAGGTTTCTCTGCTGGTTACTTCAACACTGTTGGCTC
BFLT1_0032_E04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtggACTGTTGGCTC
20110601C-015154 : AAAAGAAGGATGGACACCGTCTTCCTTCGTGTCTTCGCGACAGAACAGAGCAGACAAATC
---------+---------+---------+---------+---------+---------+ 272
UTR01_0009_C07.b : AAAAGAAGGATGGACACCGTCTTCCTTCGTGTCTTCGCGACAGAACAGAGCAGACAAATC
OVR01_0048_E11.b : AAAAGAAGGATGGACACCGTCTTCCTTCGTGTCTTCGCGACAGAACAGAGCAGACAAATC
KDN01_0075_C10.b : AAAAGAAGGATGGACACCGTCTTCCTTCGTGTCTTCGCGACAGAACAGAGCAGACAAATC
BFLT1_0032_E04.b : AAAAGAAGGATGGACACCGTCTTCCTTTGTGTCTTCGCGACAGAACAGAGCAGACAAATC
20110601C-015154 : TGTTCTTGGTCCTGAAGATTTTATGGATGAAGAGGATCTTAGTGAATTTGGGATAGCACC
---------+---------+---------+---------+---------+---------+ 332
UTR01_0009_C07.b : TGTTCTTGGTCCTGAAGATTTTATGGATGAAGAGGATCTTAGTGAATTTGGGATAGCACC
OVR01_0048_E11.b : TGTTCTTGGTCCTGAAGATTTTATGGATGAAGAGGATCTTAGTGAATTTGGGATAGCACC
KDN01_0075_C10.b : TGTTCTTGGTCCTGAAGATTTTATGGATGAAGAGGATCTTAGTGAATTTGGGATAGCACC
BFLT1_0032_E04.b : TGTTCTTGGTCCTGAAGATTTTATGGATGAAGAGGATCTTAGTGAATTTGGGATAGCACC
20110601C-015154 : TAAAGCGATTGTCACCACAGACGATTTTGCTTCTAAAACCAAAGATAGAATCCGAGAAAA
---------+---------+---------+---------+---------+---------+ 392
UTR01_0009_C07.b : TAAAGCGATTGTCACCACAGACGATTTTGCTTCTAAAACCAAAGATAGAATCCGAGAAAA
OVR01_0048_E11.b : TAAAGCGATTGTCACCACAGACGATTTTGCTTCTAAAACCAAAGATAGAATCCGAGAAGA
KDN01_0075_C10.b : TAAAGCGATTGTCACCACAGACGATTTTGCTTCTAAAACCAAAGATAGAATCCGAGAAAA
BFLT1_0032_E04.b : TAAAGCGATTGTCACCACAGACGATTTTGCTTCTAAAACCAAAGATAGAATCCGAGAAAA
20110601C-015154 : AGCCAGACAGTTAGCAGCTGCTACTGCCCCAATTCCTGGAGCCACTCTGCTTGATGACCT
---------+---------+---------+---------+---------+---------+ 452
UTR01_0009_C07.b : AGCCAGACAGTTAGCAGCTGCTACTGCCCCAATTCCTGGAGCCACTCTGCTTGTTGACCT
OVR01_0048_E11.b : AGCCAGACAGTTAGCAGCTGCTACTGCCCCAATTCCTGGAGCCACTCTGCTTGATGACCT
KDN01_0075_C10.b : AGCCAGACAGTTAGCAGCTGCTACTGCCCCAATTCCTGGAGCCACTCTGCTTGATGACCT
BFLT1_0032_E04.b : AGCCAGACAGTTAGCAGCTGCTACTGCCCCAATTCCTGGAGCCACTCTGCTTGATGACCT
20110601C-015154 : CATAACACCTGCAAAATTATCTGTTGGTTTTGAATTGCTAAGAAAAATGGGTTGGAAGGA
---------+---------+---------+---------+---------+---------+ 512
UTR01_0009_C07.b : CATAACACCTGCAAAATTATCTGTTGGTTTTGAATTGCTAAGAAAAATGGGTTGGAAGGA
OVR01_0048_E11.b : CATAACACCTGCAAAATTATCTGTTGGTTTTGAATTGCTAAGAAAAATGGGTTGGAAGGA
KDN01_0075_C10.b : CATAACACCTGCAAAATTATCTGTTGGTTTTGAATTGCTAAGAAAAATGGGTTGGAAGGA
BFLT1_0032_E04.b : CATAACACCTGCAAAATTATCTGTTGGTTTTGAATTGCTAAGAAAAATGGGTTGGAAGGA
20110601C-015154 : AGGACAAGGAATTGGACCTCGAGTAAAGAGGAGACCACGCCGACAAAAGCCTGATCCTGG
---------+---------+---------+---------+---------+---------+ 572
UTR01_0009_C07.b : AGGACAAGGAATTGGACCTCGAGTAAAGAGGAGACCACGCCGACAAAAGCCTGATCCTGG
OVR01_0048_E11.b : AGGACAAGGAATTGGACCTCGAGTAAAGAGGAGACCACGCCGACNAAAGCCTGATCCTGG
KDN01_0075_C10.b : AGGACAAGGAATTGGACCTCGAGTAAAGAGGAGACCACGCCGACAAAAGCCTGATCCTGG
BFLT1_0032_E04.b : AGGACAAGGAATTGGACCTCGAGTAAAGAGGAGACCACGCCGACAAAAGCCTGATCCTGG
20110601C-015154 : AGTAAAAATCTATGGCTGCGCATTACCCCCTGGAGGCTCCGAAGACTCTGAGGATGAAGA
---------+---------+---------+---------+---------+---------+ 632
UTR01_0009_C07.b : AGTAAAAATCTATGGCTGCGCATTACCCCCTGGAGGCTCCGAAGACTCTGAGGATGAAGA
OVR01_0048_E11.b : AGTAAAAATCTATGGCTGCGCATTACCCCCTGGAGGCTCCGAAGACTCTGAGGATGAAGA
KDN01_0075_C10.b : AGTAAAAATCTATGGCTGCGCATTACCCCCTGGAGGCTCCGAAGACTCTGAGGATGAAGA
BFLT1_0032_E04.b : AGTAAAAATCTATGGCTGCGCATTACCCCCTGGAGGCTCCGAAGACTCTGAGGATGAAGA
20110601C-015154 : TGATGACTACTTGCCGGAAAATGTGACCTTTGCACCCAAAGATGTCACACCTGTGGATTT
---------+---------+---------+---------+---------+---------+ 692
UTR01_0009_C07.b : TGATGACTACTTGCCGGAAAATGTGACCTTTGCACCCAAAGATGTCACACCTGTGGATTT
OVR01_0048_E11.b : TGATGACTACTTGCCGGAAAATGTGACCTTTGCACCCAAAGATGTCACACCTGTGGATTT
KDN01_0075_C10.b : TGATGACTACTTGCCGGAAAATGTGACCTTTGCACCCAAAGATGTCACACCTGTGGATTT
BFLT1_0032_E04.b : TGATGACTACTTGCCGGAAAATGTGACCTTTGCACCCAAAGATGTCACACCTGTGGATTT
20110601C-015154 : CACACCTAAAGATAATGTACACGGACTGGCTTACAAGGGCCTGGATCCCCACCAAGCACT
---------+---------+---------+---------+---------+---------+ 752
UTR01_0009_C07.b : CACACCTAAAGATAATGTACACGGACTGGCTTACAAGGGCCTAGATCCCCACCAAGCACT
OVR01_0048_E11.b : CACACCTAAAGATAATGTACACGGACTGGCTTACAGGGGCCTGGATCCCCACCAAGCACT
KDN01_0075_C10.b : CACACCTAAAGATAATGTACACGGACTGGCTTACAAGGGCCTAGATCCCCACCAAGCACT
BFLT1_0032_E04.b : CACACCTAAAGATAATGTACACGGACTGGCTTACAAGGGCCTGGATCCCCACCAAGCACT
20110601C-015154 : GTTTGGAACTTCAGGAGAACATTTTAATCTTTTCAGCGGAGGACCCGAGGGGACCAGCAA
---------+---------+---------+---------+---------+---------+ 812
UTR01_0009_C07.b : GTTTGGAACTTCAGGAGAACATTTTAATCTTTTCAGCGGAGGACCCGAGGGGACCAGCAA
OVR01_0048_E11.b : GTTTGGAACTTCAGGAGAACATTTTAATCTTTTCAGCGGAGGACCCGAGGGGACCAGCAA
KDN01_0075_C10.b : GTTTGGAACTTCAGGAGAACATTTTAATCTTTTCAGCGGAGGACCCGAGGGGACCAGCAA
BFLT1_0032_E04.b : GTTTGGAACTTCAGGAGAACATTTTAATCTTTTCAGCGGAGGACCCGAGGGGACCAGCAA
20110601C-015154 : TCTTCTTGGGGATATTGGAGTGAATAAAGGAAGGAAATTGGGAATTTCAGGCCAGGCTTT
---------+---------+---------+---------+---------+---------+ 872
UTR01_0009_C07.b : TCTTCTTGGGGATATTGGAGTGAt
OVR01_0048_E11.b : TCTTCTTGGGGATATTGGAGTGAATAAGGGAAGGAAATTGGGAATTTCGGGCCAGGCTTT
KDN01_0075_C10.b : TCTTCTTGGGGATATTGGAGTGAATAAAGGAAAGGAATTGGGAATTTCGGGCCAGGCTTT
BFLT1_0032_E04.b : TCTTCTTGGGGATATTGGAGTGAATAAAGGAAGGAAATTGGGAATTTCAGGCCAGGCTTT
20110601C-015154 : TGGTGTAGGTGCCCTGGAAGAGGAAGACGATGACATCTATGCCACAGAAACTCTGTCCAA
---------+---------+---------+---------+---------+---------+ 932
UTR01_0009_C07.b :
OVR01_0048_E11.b : TGGTGTAGGTGCCCTGAAAGAGGAAGACGATTACATCTATGCCACAAAAACTCTTTCCAA
KDN01_0075_C10.b : TGGTGTANGTGCCCTGGAAGAAGGAGACGATGACATCTATGCCACAGAAACTCTGTCCAA
BFLT1_0032_E04.b : TGGTGTAGGTGCCCTGGAAGAGGAAGACGATGACATCTATGCCACAGAAACTCTGTCCAA
20110601C-015154 : GTATGATACCGTTTTGGAGGACGAGGAACCTGGAGATGGGCTCTATGGCTGGACAGCACC
---------+---------+---------+---------+---------+---------+ 992
UTR01_0009_C07.b :
OVR01_0048_E11.b : GTATGATACCcgtttttaaggacgaaggagcctgaaaaatgggctttatggttggaaagc
KDN01_0075_C10.b : GTATGATACCGTTTTGAAGGACGAGGAGCCTGGAGATGGGCTCTATGGCTGGACAGCACC
BFLT1_0032_E04.b : GTATGATACCGTTTTTGAGGACGAGGAACCTGGAGATGGGCTCTATGGCTGGACAGCACC
20110601C-015154 : CCAAGGATATAAAAGTCAGAAAGAATCAGAGAAAGACTTCGCTATGTTGGCAAAATTTTG
---------+---------+---------+---------+---------+---------+ 1052
UTR01_0009_C07.b :
OVR01_0048_E11.b : aacccaaaagaaattaaaagttcaaaaaggggaattcccccggattttcaacttgggggt
KDN01_0075_C10.b : CCAAGGATATAAAAGTCAGAAAGgtaattccacggatctgcagctggccgtgnttggtca
BFLT1_0032_E04.b : CCAAGAATATAAAAGTCAGAAAGAATCAGAGAAAGACTTCGCTATGTTGGCAAAATTTTG
20110601C-015154 : GATGGATTTTCT................................................
---------+---------+---------+---------+---------+---------+ 1064
UTR01_0009_C07.b :
OVR01_0048_E11.b : ttgttgggtcccggggatggcaaaagtggaacaagcaaaagggggggggaaaagggcccc
KDN01_0075_C10.b : cggatgcaaattgaacaacaaagtgtggaaaggcccgacatgggaaagtatataaaatga
BFLT1_0032_E04.b : GATGGATTTTCTtggcttctaacctttattctctaagaaaatctatccccccactgccat
20110601C-015154 : ............................................................
---------+---------+---------+---------+---------+---------+ 1064
UTR01_0009_C07.b :
OVR01_0048_E11.b : ccaacattgggggaaaagaa
KDN01_0075_C10.b : aatttagaccagttcaaagccaaggcaatggtcaaaacccggtcggaaggaaggcccgga
BFLT1_0032_E04.b : gccaggagactatcgacttgtgcactattcccgactgtggtgggcgccactccaaaaacc
20110601C-015154 : ............................................................
---------+---------+---------+---------+---------+---------+ 1064
UTR01_0009_C07.b :
OVR01_0048_E11.b :
KDN01_0075_C10.b : atcaaaaaagaaaaagtgctgactacttttcaaatcgagagaacctttccccctcaggga
BFLT1_0032_E04.b : gccgcttacttcagtatttcagaatctgctggaagcccaccctgaccccggacccgaata
20110601C-015154 : ............................................................
---------+---------+---------+---------+---------+---------+ 1064
UTR01_0009_C07.b :
OVR01_0048_E11.b :
KDN01_0075_C10.b : actgacccggggccaaaggcccccctcaaacaacaatcagagccacgcttgggaattagg
BFLT1_0032_E04.b : ggcccaactggatgcctccagggggagaattgctggaaaaaccccaatcaaggggccccc
20110601C-015154 : ............................................................
---------+---------+---------+---------+---------+---------+ 1064
UTR01_0009_C07.b :
OVR01_0048_E11.b :
KDN01_0075_C10.b : ggttggtacccaggcctgccccgaaggaaattagccccccccactttccctggaatccgc
BFLT1_0032_E04.b : cctccgaattaaatttcttcccaaaaaataaaagacccacaggggagacggcatggtcct
20110601C-015154 : ............................................................
---------+---------+---------+---------+---------+---------+ 1064
UTR01_0009_C07.b :
OVR01_0048_E11.b :
KDN01_0075_C10.b : cctaaggcgcctttactgaaaaggaactttataccctgtttctcggaaaatttgtatgta
BFLT1_0032_E04.b : aagccctcctctgggccgaattgtgccaaagtgcctaaagaacccggcccccctcaaaga
20110601C-015154 : ............................................................
---------+---------+---------+---------+---------+---------+ 1064
UTR01_0009_C07.b :
OVR01_0048_E11.b :
KDN01_0075_C10.b : aactgt
BFLT1_0032_E04.b : gaaaccccttggccctggttggggggagaacccacaaacgcttctttctttttaattcaa
20110601C-015154 : ............................................................
---------+---------+---------+---------+---------+---------+ 1064
UTR01_0009_C07.b :
OVR01_0048_E11.b :
KDN01_0075_C10.b :
BFLT1_0032_E04.b : aaaacagtatgggtgttttataaagggaaaaattttgtctttcccacataagggggggcg
20110601C-015154 : ............................................................
---------+---------+---------+---------+---------+---------+ 1064
UTR01_0009_C07.b :
OVR01_0048_E11.b :
KDN01_0075_C10.b :
BFLT1_0032_E04.b : gaggtt
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