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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-015191

Length: 898

Sequence:  [FASTA format sequence]
GGCGGTTTGC GTCTGGAGCG GCTCCTTGGA GTCCACAGCA TCCACCGCCG GAGCCTCGCC
TTCCTTTCTC CCTCTGCAGA CATATCGAGA CACAAAAAGA GAGGCGACCC CTGGACAGCG
CGAGGGACCT ACTCGCAATG ACCGAGACCA CCAAGACCCA CGTTATCTTG CTCGCCTGCG
GCAGCTTCAA TCCCATCACC AAAGGGCACA TTCAGATGTT CGAAAGAGCC AGGGATTATC
TGCACAAAAC CGGAAGGTTT ATTGTCATTG GCGGGATTGT CTCTCCTGTC CACGACTCCT
ATGGAAAACA GGGCCTTGTG TCGAGCAGGC ACCGTCTCAT CATGTGTCAG CTGGCCGTCC
AGAACTCCGA TTGGATCAGG GTGGACCCGT GGGAGTGCTA CCAGGACACC TGGCAGACGA
CCTGCAGCGT TCTCGAACAC CATCGGGACC TCATGAAGCG GGTGACTGGC TGCATCCTCT
CCAATGTTAA CACACCCTCC ATGACACCTG TCATCGGACA GCCCCAGAAT GAGACCTCCC
AGCCCATTTA CCAGAACAGC AATGTGCCCA CCAAGCCCAC GGCAGCCAAG ATCCTGGGAA
AGGTGGGTGA GAGCCTAAGC CGGATCTGCT GTGTCCGCCC GCCGGTGGAG CGCTTCACCT
TTGTGGACGA GAACGCCAAT CTGGGCACGG TGATGCGGTA CGAGGAGATC GAGCTGCGGA
TCTTGCTGCT GTGTGGCAGT GACCTTCTGG AGTCCTTCTG CATCCCAGGG CTCTGGAACG
AGGCAGATAT GGAGGTGATT GTGGGGGACT TTGGGATCGT GGTGGTGCCC CGGGATGCAG
CTGACACAGA CCGAATTATG AATCACTCCT CAATACTCCG CAAATATAAA AACAACAT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		NMNAT2	nicotinamide mononucleotide adenylyltransferase 2 isoform 1 [Homo sapiens].	498	e-141	O
		NMNAT2	nicotinamide mononucleotide adenylyltransferase 2 isoform 2 [Homo sapiens].	441	e-124	O
		NMNAT1	nicotinamide mononucleotide adenylyltransferase 1 [Homo sapiens].	156	2e-38	O
		NMNAT3	nicotinamide mononucleotide adenylyltransferase 3 isoform 1 [Homo sapiens].	83.6	2e-16	O
		NMNAT3	nicotinamide mononucleotide adenylyltransferase 3 isoform 2 [Homo sapiens].	51.6	1e-06	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Nmnat2	nicotinamide mononucleotide adenylyltransferase 2 [Mus musculus].	498	e-141	O
		Nmnat1	nicotinamide mononucleotide adenylyltransferase 1 [Mus musculus].	165	5e-41	O
		Nmnat3	nicotinamide mononucleotide adenylyltransferase 3 [Mus musculus].	136	2e-32	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC610576	PREDICTED: similar to nicotinamide mononucleotide adenylyltransferase 2 isoform 2 [Canis familiaris].	439	e-123
		LOC479601	PREDICTED: similar to nicotinamide nucleotide adenylyltransferase 1 [Canis familiaris].	155	4e-38	O
		LOC477091	PREDICTED: similar to Nicotinamide mononucleotide adenylyltransferase 3 (NMN adenylyltransferase 3) [Canis familiaris].	131	1e-30	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		NMNAT2	nicotinamide mononucleotide adenylyltransferase 2 [Bos taurus].	497	e-141	O
		NMNAT1	nicotinamide mononucleotide adenylyltransferase 1 [Bos taurus].	158	5e-39	O
		LOC100336180	PREDICTED: nicotinamide mononucleotide adenylyltransferase 2-like, partial [Bos taurus].	145	6e-35	O
		LOC100336180	PREDICTED: nicotinamide mononucleotide adenylyltransferase 2-like [Bos taurus].	142	3e-34	O
		LOC100337285	PREDICTED: nicotinamide mononucleotide adenylyltransferase 3-like [Bos taurus].	89	5e-18	O
		NMNAT3	PREDICTED: nicotinamide mononucleotide adenylyltransferase 3-like [Bos taurus].	87.8	1e-17	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100515332	PREDICTED: nicotinamide mononucleotide adenylyltransferase 2-like [Sus scrofa].	503	e-143	O
		LOC100623321	PREDICTED: nicotinamide mononucleotide adenylyltransferase 3-like [Sus scrofa].	92	4e-19	O

Alignment:      TOP

20110601C-015191 : ...........................................................G
                   ---------+---------+---------+---------+---------+---------+ 1
HTMT1_0016_C03.b : tttaacgacggtagacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxG
CBLT1_0087_C08.b :                            ttttacgacggtagaggxxxxxxxxxxxxxxxx
HTMT1_0100_A07.b :                                                 nttaggacagta
CBLT1_0022_E05.b :                                                          nnn


20110601C-015191 : GCGGTTTGCGTCTGGAGCGGCTCCTTGGAGTCCACAGCATCCACCGCCGGAGCCTCGCCT
                   ---------+---------+---------+---------+---------+---------+ 61
HTMT1_0016_C03.b : GCGGTTTGCGTCTGGAGCGGCTCCTTGGAGTCCACAGCATCCACCGCCGGAGCCTCGCCT
CBLT1_0087_C08.b : xxxxxxxxxxxxxxxxxxxxxxxxxgGGAGTCCACAGCATCCACCGCCGGAGCCTCGCCT
HTMT1_0100_A07.b : agaggccgtaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgGGAGCCTCGCCT
CBLT1_0022_E05.b : nccgacagtagaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgGCCT


20110601C-015191 : TCCTTTCTCCCTCTGCAGACATATCGAGACACAAAAAGAGAGGCGACCCCTGGACAGCGC
                   ---------+---------+---------+---------+---------+---------+ 121
HTMT1_0016_C03.b : TCCTTTCTCCCTCTGCAGACATATCGAGACACAAAAAGAGAGGCGACCCCTGGACAGCGC
CBLT1_0087_C08.b : TCCTTTCTCCCTCTGCAGACATATCGAGACACAAAAAGAGAGGCGACCCCTGGACAGCGC
HTMT1_0100_A07.b : TCCTTTCTCCCTCTGCAGACATATCGAGACACAAAAAGAGAGGCGACCCCTGGACAGCGC
CBLT1_0022_E05.b : TCCTTTCTCCCTCTGCAGACATATCGAGACACAAAAAGAGAGGCGACCCCTGGACAGCGC


20110601C-015191 : GAGGGACCTACTCGCAATGACCGAGACCACCAAGACCCACGTTATCTTGCTCGCCTGCGG
                   ---------+---------+---------+---------+---------+---------+ 181
HTMT1_0016_C03.b : GAGGGACCTACTCGCAATGACCGAGACCACCAAGACCCACGTTATCTTGCTCGCCTGCGG
CBLT1_0087_C08.b : GAGGGACCTACTCGCAATGACCGAGACCACCAAGACCCACGTTATCTTGCTCGCCTGCGG
HTMT1_0100_A07.b : GAGGGACCTACTCGCAATGACCGAGACCACCAAGACCCACGTTATCTTGCTCGCCTGCGG
CBLT1_0022_E05.b : GAGGGACCTACTCGCAATGACCGAGACCACCAAGACCCACGTTATCTTGCTCGCCTGCGG


20110601C-015191 : CAGCTTCAATCCCATCACCAAAGGGCACATTCAGATGTTCGAAAGAGCCAGGGATTATCT
                   ---------+---------+---------+---------+---------+---------+ 241
HTMT1_0016_C03.b : CAGCTTCAATCCCATCACCAAAGGGCACATTCAGATGTTCGAAAGAGCCAGGGATTATCT
CBLT1_0087_C08.b : CAGCTTCAATCCCATCACCAAAGGGCACATTCAGATGTTCGAAAGAGCCAGGGATTATCT
HTMT1_0100_A07.b : CAGCTTCAATCCCATCACCAAAGGGCACATTCAGATGTTCGAAAGAGCCAGGGATTATCT
CBLT1_0022_E05.b : CAGCTTCAATCCCATCACCAAAGGGCACATTCAGATGTTCGAAAGAGCCAGGGATTATCT


20110601C-015191 : GCACAAAACCGGAAGGTTTATTGTCATTGGCGGGATTGTCTCTCCTGTCCACGACTCCTA
                   ---------+---------+---------+---------+---------+---------+ 301
HTMT1_0016_C03.b : GCACAAAACCGGAAGGTTTATTGTCATTGGCGGGATTGTCTCTCCTGTCCACGACTCCTA
CBLT1_0087_C08.b : GCACAAAACCGGAAGGTTTATTGTCATTGGCGGGATTGTCTCTCCTGTCCACGACTCCTA
HTMT1_0100_A07.b : GCACAAAACCGGAAGGTTTATTGTCATTGGCGGGATTGTCTCTCCTGTCCACGACTCCTA
CBLT1_0022_E05.b : GCACAAAACCGGAAGGTTTATTGTCATTGGCGGGATTGTCTCTCCTGTCCACGACTCCTA


20110601C-015191 : TGGAAAACAGGGCCTTGTGTCGAGCAGGCACCGTCTCATCATGTGTCAGCTGGCCGTCCA
                   ---------+---------+---------+---------+---------+---------+ 361
HTMT1_0016_C03.b : TGGAAAACAGGGCCTTGTGTCGAGCAGGCACCGTCTCATCATGTGTCAGCTGGCCGTCCA
CBLT1_0087_C08.b : TGGAAAACAGGGCCTTGTGTCGAGCCGGCACCGTCTCATCATGTGTCAGCTGGCCGTCCA
HTMT1_0100_A07.b : TGGAAAACAGGGCCTTGTGTCGAGCCGGCACCGTCTCATCATGTGTCAGCTGGCCGTCCA
CBLT1_0022_E05.b : TGGAAAACAGGGCCTTGTGTCGAGCAGGCACCGTCTCATCATGTGTCAGCTGGCCGTCCA


20110601C-015191 : GAACTCCGATTGGATCAGGGTGGACCCGTGGGAGTGCTACCAGGACACCTGGCAGACGAC
                   ---------+---------+---------+---------+---------+---------+ 421
HTMT1_0016_C03.b : GAACTCCGATTGGATCAGGGTGGACCCGTGGGAGTGCTACCAGGACACCTGGCAGACGAC
CBLT1_0087_C08.b : GAACTCCGATTGGATCAGGGTGGACCCGTGGGAGTGCTACCAGGACACCTGGCAGACGAC
HTMT1_0100_A07.b : GAACTCCGATTGGATCAGGGTGGACCCGTGGGAGTGCTACCAGGACACCTGGCAGACGAC
CBLT1_0022_E05.b : GAACTCCGATTGGATCAGGGTGGACCCGTGGGAGTGCTACCAGGACACCTGGCAGACGAC


20110601C-015191 : CTGCAGCGTTCTCGAACACCATCGGGACCTCATGAAGCGGGTGACTGGCTGCATCCTCTC
                   ---------+---------+---------+---------+---------+---------+ 481
HTMT1_0016_C03.b : CTGCAGCGTTCTCGAACACCATCGGGACCTCATGAAGCGGGTGACTGGCTGCATCCTCTC
CBLT1_0087_C08.b : CTGCAGCGTTCTCGAACACCATCGGGACCTCATGAAGCGGGTGACTGGCTGCATCCTCTC
HTMT1_0100_A07.b : CTGCAGCGTTCTCGAACACCATCGGGACCTCATGAAGCGGGTGACTGGCTGCATCCTCTC
CBLT1_0022_E05.b : CTGCAGCGTTCTCGAACACCATCGGGACCTCATGAAGCGGGTGACTGGCTGCATCCTCTC


20110601C-015191 : CAATGTTAACACACCCTCCATGACACCTGTCATCGGACAGCCCCAGAATGAGACCTCCCA
                   ---------+---------+---------+---------+---------+---------+ 541
HTMT1_0016_C03.b : CAATGTTAACACACCCTCCATGACACCTGTCATCGGACAGCCCCAGAATGAGACCTCCCA
CBLT1_0087_C08.b : CAATGTTAACACACCCTCCATGACACCTGTCATCGGACAGCCCCAGAATGAGACCTCCCA
HTMT1_0100_A07.b : CAATGTTAACACACCCTCCATGACACCTGTCATCGGACAGCCCCAGAATGAGACCTCCCA
CBLT1_0022_E05.b : CAATGTTAACACACCCTCCATGACACCTGTCATCGGACAGCCCCAGAATGAGACCTCCCA


20110601C-015191 : GCCCATTTACCAGAACAGCAATGTGCCCACCAAGCCCACGGCAGCCAAGATCCTGGGAAA
                   ---------+---------+---------+---------+---------+---------+ 601
HTMT1_0016_C03.b : GCCCATTTACCAGAACAGCAATGTGCCCACCAAGCCCACGGCAGCCAAGATCCTGGGAAA
CBLT1_0087_C08.b : GCCCATTTACCAGAACAGCAATGTGCCCACCAAGCCCACGGCAGCCAAGATCCTGGGAAA
HTMT1_0100_A07.b : GCCCATTTACCAGAACAGCAATGTGCCCACCAAGCCCACGGCAGCCAAGATCCTGGGAAA
CBLT1_0022_E05.b : GCCCATTTACCAGAACAGCAATGTGCCCACCAAGCCCACGGCAGCCAAGATCCTGGGAAA


20110601C-015191 : GGTGGGTGAGAGCCTAAGCCGGATCTGCTGTGTCCGCCCGCCGGTGGAGCGCTTCACCTT
                   ---------+---------+---------+---------+---------+---------+ 661
HTMT1_0016_C03.b : GGTGGGTGAGAGCCTAAGCCGGATCTGCTGTGTCCGCCCGCCGGTGGAGCGCTTCACCTT
CBLT1_0087_C08.b : GGTGGGTGAGAGCCTAAGCCGGATCTGCTGTGTCCGCCCGCCGGTGGAGCGCTTCACCTT
HTMT1_0100_A07.b : GGTGGGTGAGAGCCTAAGCCGGATCTGCTGTGTCCGCCCGCCGGTGGAGCGCTTCACCTT
CBLT1_0022_E05.b : GGTGGGTGAGAGCCTAAGCCGGATCTGCTGTGTCCGCCCGCCGGTGGAGCGCTTCACCTT


20110601C-015191 : TGTGGACGAGAACGCCAATCTGGGCACGGTGATGCGGTACGAGGAGATCGAGCTGCGGAT
                   ---------+---------+---------+---------+---------+---------+ 721
HTMT1_0016_C03.b : TGTGGACGAGAACGCCAATCTGGGCACGGTGATGCGGTACGAGGAGATCGAGCTGCGGAT
CBLT1_0087_C08.b : TGTGGACGAGAACGCCAATCTGGGCACGGTGATGCGGTACGAGGAGATCGAGCTGCGGAT
HTMT1_0100_A07.b : TGTGGACGAGAACGCCAATCTGGGCACGGTGATGCGGTACGAGGAGATCGAGCTGCGGAT
CBLT1_0022_E05.b : TGTGGACGAGAACGCCAATCTGGGCACGGTGATGCGGTACGAGGAGATCGAGCTGCGGAT


20110601C-015191 : CTTGCTGCTGTGTGGCAGTGACCTTCTGGAGTCCTTCTGCATCCCAGGGCTCTGGAACGA
                   ---------+---------+---------+---------+---------+---------+ 781
HTMT1_0016_C03.b : CTTGCTGCTGTGTGGCAGTGACCTTCTGGAGTCCTTCTGCATCCCAGGGCTCTGGAACGA
CBLT1_0087_C08.b : CTTGCTGCTGTGTGGCAGTGACCTTCTGGAGTCCTTCTGCATCCCAGGGCTCTGGAACGA
HTMT1_0100_A07.b : CTTGCTGCTGTGTGGCAGTGACCTTCTGGAGTCCTTCTGCATCCCAG*GCTCTGGAACGA
CBLT1_0022_E05.b : CTTGCTGCTGTGTGGCAGTGACCTTCTGGAGTCCTTCTGCATCCCAGGGCTCTGGAACGA


20110601C-015191 : GGCAGATATGGAGGTGATTGTGGGGGACTTTGGGATCGTGGTGGTGCCCCGGGATGCAGC
                   ---------+---------+---------+---------+---------+---------+ 841
HTMT1_0016_C03.b : GGCAGATATGGAGGTGATTGTGGGGGACTTTNGGATCGTGGTGGTGCCCCGGGATGCAGC
CBLT1_0087_C08.b : GGCAGATATGGAGGTGATTGTGGGGGACTTTGGGATCGTGGTGGTGCCCCGGGATGCAGC
HTMT1_0100_A07.b : GGCAGATATGGAGGTGATTGTGGGGGACTTTGGGATCGTGGTGGTGCCCCGGGATGCAGC
CBLT1_0022_E05.b : GGCAGATATGGAGGTGATTGTGGGGGACTTTGGGATCGTGGTGGTGCCCCGGGATGCAGC


20110601C-015191 : TGACACAGACCGAATTATGAATCACTCCTCAATACTCCGCAAATATAAAAACAACAT...
                   ---------+---------+---------+---------+---------+---------+ 898
HTMT1_0016_C03.b : TGACACAGACCGAATTATGAATCACTCCTCAATACTCCGCAAAATATAAAACAACATctt
CBLT1_0087_C08.b : TGACACAGACCGAATTATGAATCACTCCTNCATACTCCGCAAATATAAAAACaacatcct
HTMT1_0100_A07.b : TGACACAGACCGAATTATGAATCACTCCTTCATACTCCGCAAAtataaaaacaacatctt
CBLT1_0022_E05.b : TGACACAGACCGGAATATGAATCACTCCTCAATACTCCGCAAATATAAAAACaacatctt


20110601C-015191 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 898
HTMT1_0016_C03.b : gggtggtgaaggatgacatcaaccatccatgtctgttgtcagctcaccaagagcaggctg
CBLT1_0087_C08.b : ggtgggtgaggatgacctcaaccatcccatgtctgttgtcagctcaacaaaaagcagctg
HTMT1_0100_A07.b : gggtgtgaaagatgacatcaaccatcccctgtctgttgtccgctcaaccaagagcaagct
CBLT1_0022_E05.b : ggtggtgaaggatgacatcaaccatccccatgtctgttgtcagctcaaccaagaacaggc


20110601C-015191 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 898
HTMT1_0016_C03.b : gcctgcagcagggggacgccacgtcgtgaatactggtccaggccgtcatcgactaattct
CBLT1_0087_C08.b : ggcctgcaacacggggaacgccacttcttggattactggtccagccgggtctcgatataa
HTMT1_0100_A07.b : gcccctgcaacacgggggacggccagtctgggataactgtccaaccggtcatcgaataca
CBLT1_0022_E05.b : tgggcctgcagcacggggacggcccctcctggattaactgttcaaaccgggcatcgacta


20110601C-015191 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 898
HTMT1_0016_C03.b : aagagcagctgtatatcacccttcgggtaggggcccaaggccttggctcattctcccttg
CBLT1_0087_C08.b : ttccaaaaaccagctgtatatcaagcctcggggttaggcccccaagccccttggctcaat
HTMT1_0100_A07.b : ntccaagaaccgctgttaatcaacgcttgggctaggggccaagggccttggctcatttcc
CBLT1_0022_E05.b : attcctcaaagccactgtattcaacgcctcggctaggggcccaaggcccttgctcaattt


20110601C-015191 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 898
HTMT1_0016_C03.b : tccccgcaaaaaagggcccttgtgcgccccgttctccggccccgggtttccacccccacc
CBLT1_0087_C08.b : ctcccctggtctccgcaaaaaaggggcccttggccgtccccgttttcccggcctttggtt
HTMT1_0100_A07.b : cctgtcctcggcaaaaaagggcccttgtcggtccgtttctccgggctttgtttccacccc
CBLT1_0022_E05.b : cccttgtctcgcaaaaaagggcccctggtcgtcccctcctccccggccttggtttcccac


20110601C-015191 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 898
HTMT1_0016_C03.b : tgaggggcccccttggaaaaaaccaagggggggactgggaaaccaaacccccccggcagt
CBLT1_0087_C08.b : tccccccccccacttggaggtgggcccattgggaatcaaaccccagtggggggactggaa
HTMT1_0100_A07.b : cacctgggggggccccattggaacaaacccaaggggggaacggaaaaaacaacacccctc
CBLT1_0022_E05.b : ccccactggaggggggcccctggggaacaaacccaaaggtggggaacgagaaaaacaaac


20110601C-015191 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 898
HTMT1_0016_C03.b : ttttgggaattccctttcggggggggggggggaaggggggtttnaacnctttaaataana
CBLT1_0087_C08.b : aaacccgaccccctcgggcaattctttgaaaacttctcttctcgggggggggggggaggg
HTMT1_0100_A07.b : gggcgatatttggaaactctccattcccgtggggggaaaaaaagtttttaaaaattttaa
CBLT1_0022_E05.b : tccccccgggcaatttttggaaaatttcctttccgggggggggggggggagggggggggg


20110601C-015191 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 898
HTMT1_0016_C03.b : ttttttatantntaaaaaaaacctctcccataattaaa                     
CBLT1_0087_C08.b : aggggggtnnannnncntncctcanaactatgtcattcaacagaggcgggacacctccgc
HTMT1_0100_A07.b : ata                                                        
CBLT1_0022_E05.b : nnnnant                                                    


20110601C-015191 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 898
HTMT1_0016_C03.b :                                                             
CBLT1_0087_C08.b : gctgttcacgtacgaatatgtccgctgcgttaattntttttgcggctcttccagtct  
HTMT1_0100_A07.b :                                                             
CBLT1_0022_E05.b :