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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-015200

Length: 936

Sequence:  [FASTA format sequence]
GTCTGCGGGC TGCCGGCTTC TCGGTGCGGT TCGCCTTCCC TGATCCGGGC GTTCCGGCAG
CCGGCCAGTC TTCTCTCTTT CGGCGGCGTC CCGCGGCCTC GAGTCAAGAC TGAGATTCCG
GAGCTGCGGG GCCGGAGCCT GCTTCTCCCC TTCCTCCGGC TCGGGCCGAG GCTGCGTCGC
GGTGGGCCAG GCCCCAGGGC GACTCCCATG GCGGGGCCGC GGGTGGAGGT GGACGGCGGC
ATCATGGAAG GGGGCGGGCA GATCCTGAGG GTGTCGACGG CCTTGAGCTG CCTGCTGGGC
CTCCCCTTGC GGGTGCAGAA GATTCGAGCC GGCCGCAGCA CGCCCGGCCT GAGGCCTCAG
CATTTATCTG GACTGGAAAT GGTTCGAGAT TTGTGTGATG GGCAACTAGA GGGGGCAGAA
ATCGGCTCAA CAGAAATAAT GTTTACACCA GAGAAGATCA AAGGCGGAAC CCACACCGCA
GATACCAAGA CAGCAGGGAG TGTGTGCCTC TTGATGCAGG TGTCAATGCC CTGTGTTCTT
TTTGCTGCTT CTCCATCAGA ACTTCGTTTG AAAGGTGGAA CTAATGCTGA AATGGCACCA
CAGATTGACT ACACGGCCAT GGTTTTCAAG CCAATTGTTG AAAAATTTGG TTTCACATTT
AACTGTGACA TTAAAATGAG GGGCTACTAC CCAAAAGGGG GTGGTGAAGT GATTGTCCGA
ATGTCGCCAG TTAAACAGTT GAACCCAATA AATTTAACTG ACCGTGGCTC TGTGACTAAG
ATATATGGAA GAGCTTTTGT TGCTGGTGTT TTGCCATTTA AAGTAGCAAA AGATATGGCG
GCGGCAGCTG TAAGATGCAT CAGAAAGGAG ATTAGGGATC TGTATGTTAA CATCCAGCCT
GTTCAGGAAC CTAAAGACCA AGCTTTTGCC AATGGA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		RTCD1	RNA 3'-terminal phosphate cyclase isoform b [Homo sapiens].	466	e-131	O
		RTCD1	RNA 3'-terminal phosphate cyclase isoform a [Homo sapiens].	456	e-128	O
		RCL1	RNA 3'-terminal phosphate cyclase-like protein [Homo sapiens].	95.1	8e-20	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Rtcd1	RNA 3'-terminal phosphate cyclase [Mus musculus].	450	e-127	O
		Rcl1	RNA 3'-terminal phosphate cyclase-like protein [Mus musculus].	94	2e-19	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC479928	PREDICTED: similar to RNA 3-terminal phosphate cyclase (RNA-3-phosphate cyclase) (RNA cyclase) isoform 1 [Canis familiaris].	475	e-134	O
		LOC479928	PREDICTED: similar to RNA 3-terminal phosphate cyclase (RNA-3-phosphate cyclase) (RNA cyclase) isoform 2 [Canis familiaris].	463	e-131	O
		LOC479928	PREDICTED: similar to RNA terminal phosphate cyclase domain 1 isoform 3 [Canis familiaris].	272	5e-75	O
		LOC484183	PREDICTED: similar to RNA cyclase homolog [Canis familiaris].	93.2	3e-19

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		RTCD1	RNA 3'-terminal phosphate cyclase [Bos taurus].	474	e-134	O
		RCL1	RNA 3'-terminal phosphate cyclase-like protein [Bos taurus].	90.9	1e-18	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		RTCD1	RNA 3'-terminal phosphate cyclase [Sus scrofa].	484	e-137	O
		RCL1	PREDICTED: RNA 3'-terminal phosphate cyclase-like protein [Sus scrofa].	96.3	2e-20	O

Alignment:      TOP

20110601C-015200 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVR01_0019_A07.b :           gggggtgaacctattagxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BFLT1_0087_A12.b : ngggttttngggaatcccgttagcgttcgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0203_D08.b :                                                             
OVRM1_0073_A10.b :                                                             


20110601C-015200 : .................................GTCTGCGGGCTGCCGGCTTCTCGGTGC
                   ---------+---------+---------+---------+---------+---------+ 27
OVR01_0019_A07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTCTGCGGGCTGCCGGCTTCTCGGTGC
BFLT1_0087_A12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTCTGCGGGCTGCCGGCTTCTCGGTGC
LVRM1_0203_D08.b :             xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgtct
OVRM1_0073_A10.b :                                       cxxxxxxxxxxxxxxxxxxxxx


20110601C-015200 : GGTTCGCCTTCCCTGATCCGGGCGTTCCGGCAGCCGGCCAGTCTTCTCTCTTTCGGCGGC
                   ---------+---------+---------+---------+---------+---------+ 87
OVR01_0019_A07.b : GGTTCGCCTTCCCTGATCCGGGCGTTCCGGCAGCCGGCCAGTCTTCTCTCTTTCGGCGGC
BFLT1_0087_A12.b : GGTTCGCCTTCCCTGATCCGGGCGTTCCGGCAGCCGGCCAGTCTTCTCTCTTTCGGCGGC
LVRM1_0203_D08.b : gcgggctgccggcttcTCCGGGCGTTCGGGCAGCGGGTCAGTCTTCTCTCTTTCGGCGGC
OVRM1_0073_A10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTCTCTCTTTCGGCGGC


20110601C-015200 : GTCCCGCGGCCTCGAGTCAAGACTGAGATTCCGGAGCTGCGGGGCCGGAGCCTGCTTCTC
                   ---------+---------+---------+---------+---------+---------+ 147
OVR01_0019_A07.b : GTCCCGCGGCCTCGAGTCAAGACTGAGATTCCGGAGCTGCGGGGCCGGAGCCTGCTTCTC
BFLT1_0087_A12.b : GTCCCGCGGCCTCGAGTCAAGACTGAGATTCCGGAGCTGCGGGGCCGGAGCCTGCTTCTC
LVRM1_0203_D08.b : GTCCCGCGGCCTCGAGTCAAGACTGAGATTCCGGAGCTGCGGGGCAGGAGCCTGCTTCTC
OVRM1_0073_A10.b : GTCCCGCGGCCTCGAGTCAAGACTGAGATTCCGGAGCTGCGGGGCAGGAGCCTGCTTCTC


20110601C-015200 : CCCTTCCTCCGGCTCGGGCCGAGGCTGCGTCGCGGTGGGCCAGGCCCCAGGGCGACTCCC
                   ---------+---------+---------+---------+---------+---------+ 207
OVR01_0019_A07.b : CCCTTCCTCCGGCTCGGGCCGAGGCTGCGTCGCGGTGGGCCAGGCCCCAGGGCGACTCCC
BFLT1_0087_A12.b : CCCTTCCTCCGGTTCGGGCCGAGGCTGCGTCGCAGTGGGCCAGGCCCCAGGGCGACTCCC
LVRM1_0203_D08.b : CCCTTCCTCCGGCTCGGGCCGAGGCTGCGTCGCGGCGGGCCAGGCCCCAGGGCGACTCCC
OVRM1_0073_A10.b : CCCTTCCTCCGGCTCGGGCCGAGGCTGCGTCGCGGCGGGCCAGGCCCCAGGGCGACTCCC


20110601C-015200 : ATGGCGGGGCCGCGGGTGGAGGTGGACGGCGGCATCATGGAAGGGGGCGGGCAGATCCTG
                   ---------+---------+---------+---------+---------+---------+ 267
OVR01_0019_A07.b : ATGGCGGGGCCGCGGGTGGAGGTGGACGGCGGCATCATGGAAGGGGGCGGGCAGATCCTG
BFLT1_0087_A12.b : ATGGCGGGGCCGCGGGTGGAGGTGGACGGCGGCATCATGGAAGGGGGCGGGCAGATCCTG
LVRM1_0203_D08.b : ATGGCGGGGCCGCGGGTGGAGGTGGACGGCGGCATCATGGAAGGAGGCGGGCAGATCCTG
OVRM1_0073_A10.b : ATGGCGGGGCCGCGGGTGGAGGTGGACGGCGGCATCATGGAAGGAGGCGGGCAGATCCTG


20110601C-015200 : AGGGTGTCGACGGCCTTGAGCTGCCTGCTGGGCCTCCCCTTGCGGGTGCAGAAGATTCGA
                   ---------+---------+---------+---------+---------+---------+ 327
OVR01_0019_A07.b : AGGGTGTCGACGGCCTTGAGCTGCCTGCTGGGCCTCCCCTTGCGGGTGCAGAAGATTCGA
BFLT1_0087_A12.b : AGGGTGTCGACGGCCTTGAGCTGCCTGCTGGGCCTCCCCTTGCGGGTGCAGAAGATTCGA
LVRM1_0203_D08.b : AGGGTGTCGACGGCCTTGAGCTGCCTGCTGGGCCTCCCCTTGCGGGTGCAGAAGATTCGA
OVRM1_0073_A10.b : AGGGTGTCGACGGCCTTGAGCTGCCTGCTGGGCCTCCCCTTGCGGGTGCAGAAGATTCGA


20110601C-015200 : GCCGGCCGCAGCACGCCCGGCCTGAGGCCTCAGCATTTATCTGGACTGGAAATGGTTCGA
                   ---------+---------+---------+---------+---------+---------+ 387
OVR01_0019_A07.b : GCCGGCCGCAGCACGCCCGGCCTGAGGCCTCAGCATTTATCTGGACTGGAAATGGTTCGA
BFLT1_0087_A12.b : GCCGGCCGCAGCACGCCCGGCCTGAGGCCTCAGCATTTATCTGGACTGGAAATGGTTCGA
LVRM1_0203_D08.b : GCCGGCCGCAGCACGCCCGGCCTGAGGCCTCAGCATTTATCTGGACTGGAAATGGTTCGA
OVRM1_0073_A10.b : GCCGGCCGCAGCACGCCCGGCCTGAGGCCTCAGCATTTATCTGGACTGGAAATGGTTCGA


20110601C-015200 : GATTTGTGTGATGGGCAACTAGAGGGGGCAGAAATCGGCTCAACAGAAATAATGTTTACA
                   ---------+---------+---------+---------+---------+---------+ 447
OVR01_0019_A07.b : GATTTGTGTGATGGGCAACTAGAGGGGGCAGAAATCGGCTCAACAGAAATAATGTTTACA
BFLT1_0087_A12.b : GATTTGTGTGATGGGCAACTAGAGGGGGCAGAAATCGGCTCAACAGAAATAATGTTTACA
LVRM1_0203_D08.b : GATTTGTGTGATGGGCAACTAGAGGGGGCAGAAATCGGCTCAACAGAAATAATGTTTACA
OVRM1_0073_A10.b : GATTTGTGTGATGGGCAACTAGAGGGGGCAGAAATCGGCTCAACAGAAATAGTGGTTACA


20110601C-015200 : CCAGAGAAGATCAAAGGCGGAACCCACACCGCAGATACCAAGACAGCAGGGAGTGTGTGC
                   ---------+---------+---------+---------+---------+---------+ 507
OVR01_0019_A07.b : CCAGAGAAGATCAAAGGCGGAACCCACACCGCAGATACCAAGACAGCAGGGAGTGTGTGC
BFLT1_0087_A12.b : CCAGAGAAGATCAAAGGCGGAACCCACACCGCAGATACCAAGACAGCAGGGAGTGTGTGC
LVRM1_0203_D08.b : CCAGAGAAGATCAAAGGCGGAACCCACACCGCAGATACCAAGACAGCAGGGAGTGTGTGC
OVRM1_0073_A10.b : CCAGAGAAGATCAGAGGCGGAACCCACACCGCAGATACCAAGACAGCAGGGAGTGGGTGC


20110601C-015200 : CTCTTGATGCAGGTGTCAATGCCCTGTGTTCTTTTTGCTGCTTCTCCATCAGAACTTCGT
                   ---------+---------+---------+---------+---------+---------+ 567
OVR01_0019_A07.b : CTCTTGATGCAGGTGTCAATGCCCTGTGTTCTTTTTGCTGCTTCTCCATCAGAACTTCGT
BFLT1_0087_A12.b : CTCTTGATGCAGGTGTCAATGCCCTGTGTTCTTTTTGCTGCTTCTCCATCAGAACTTCGT
LVRM1_0203_D08.b : CTCTTGATGCAGGTGTCAATGCCCTGTGTTCTTTTTGCTGCTTCTCCATCAGAACTTCGT
OVRM1_0073_A10.b : CTCTTGATGCAGGTGTGAATGCCCTGTGTTCTTTTTGCTGCTTGTCCATGACAACTGGGA


20110601C-015200 : TTGAAAGGTGGAACTAATGCTGAAATGGCACCACAGATTGACTACACGGCCATGGTTTTC
                   ---------+---------+---------+---------+---------+---------+ 627
OVR01_0019_A07.b : TTGAAAGGTGGAACTAATGCTGAAATGGCACCACAGATTGACTACACGGCCATGGTTTTC
BFLT1_0087_A12.b : TTGAAAGGTGGAACTAATGCTGAAATGGCACCACAGATTGACTACACGGCCATGGTTTTC
LVRM1_0203_D08.b : TTGAAAGGTGGAACTAATGCTGAAATGGCACCACAGATTGACTACACGGCCATGGTTTTN
OVRM1_0073_A10.b : AGGAAAGGAGGAACTGATGCTGAAATGacgccacgggagggctacacgggcggggagatg


20110601C-015200 : AAGCCAATTGTTGAAAAATTTGGTTTCACATTTAACTGTGACATTAAAATGAGGGGCTAC
                   ---------+---------+---------+---------+---------+---------+ 687
OVR01_0019_A07.b : AAGCCAATTGTTGAAAAATTTGGTTTCACATTTAACTGTGACATTAAAATGAGGGGCTAC
BFLT1_0087_A12.b : AAGCCAATTGTTGAAAAATTTGGTTTCACATTTAACTGTGACATTAAAATGAGGGGCTAC
LVRM1_0203_D08.b : CAGCCCATTGTTGAAAATTTGGGTTTCACATTT*ACTGTGACATTAAAATGAGGGGCTAC
OVRM1_0073_A10.b : aagggggaacaaaaaaaacagggggacacataaaactgagacaacagggggggaaactct


20110601C-015200 : TACCCAAAAGGGGGTGGTGAAGTGATTGTCCGAATGTCGCCAGTTAAACAGTTGAACCCA
                   ---------+---------+---------+---------+---------+---------+ 747
OVR01_0019_A07.b : TACCCAAAAGGGGGTGGTGAAGTGATTGTCCGAATGTCGCCAGTTAAACAGTTGAACCCA
BFLT1_0087_A12.b : TACCCAAAAGGGGGTGGTGAAGTGATTGTCCGAATGTCGCCANGTTAACAGTTGAACCCC
LVRM1_0203_D08.b : TACCCAAAAGGGGGTGGTGAAGTGATTGTCCGAATGTCGCCAGTTAAACAGTTGGACCCC
OVRM1_0073_A10.b : aaccaaagagacaagagacaaggaaaagacacataacngggggaaacaggaaaggggaaa


20110601C-015200 : ATAAATTTAACTGACCGTGGCTCTGTGACTAAGATATATGGAAGAGCTTTTGTTGCTGGT
                   ---------+---------+---------+---------+---------+---------+ 807
OVR01_0019_A07.b : ATAAATTTAACTGACCGTGGCTCTGTGACTAAGATATATGGAAGAGCTTTTGTTGCTGGT
BFLT1_0087_A12.b : ATAAATTTTACTGACCGTGGCTCTGTGACTAAGATATATGGAAGAAGCTTTTGTGCTGGT
LVRM1_0203_D08.b : AT*AATTTAACTGACCGTGGCTCTG                                  
OVRM1_0073_A10.b : ggggaaggaaaaaacggggggggggaaaaacgggacgggggggggggggggaaaaaaaaa


20110601C-015200 : GTTTTGCCATTTAAAGTAGCAAAAGATATGGCGGCGGCAGCTGTAAGATGCATCAGAAAG
                   ---------+---------+---------+---------+---------+---------+ 867
OVR01_0019_A07.b : GTTTTGCCATTTAAAGTAGCAAAAGATATGGCGGCGGCAGCTGTAAGATGCATCAGAAAG
BFLT1_0087_A12.b : GTTTTGCCATTTAAAGTAGCAAAAGATATGGCGGCGGCAGCTGGTAGATGCATCAGAAAG
LVRM1_0203_D08.b :                                                             
OVRM1_0073_A10.b : aacaag                                                     


20110601C-015200 : GAGATTAGGGATCTGTATGTTAACATCCAGCCTGTTCAGGAACCTAAAGACCAAGCTTTT
                   ---------+---------+---------+---------+---------+---------+ 927
OVR01_0019_A07.b : GAGATTAGGGATCTGTATGTTAACATCCAGCCTGTTCAGGAACCTAAAGACCNAGCTTTT
BFLT1_0087_A12.b : GAGATTAGGGATCTGTATGTTAACATCCAGCCTGGTTCAGGACCTAAAGACCAAGCTTTT
LVRM1_0203_D08.b :                                                             
OVRM1_0073_A10.b :                                                             


20110601C-015200 : GCCAATGGA...................................................
                   ---------+---------+---------+---------+---------+---------+ 936
OVR01_0019_A07.b : GCCAATGGAagtgggattaatcattattgctgagacatccactggctgtttgtttgctgg
BFLT1_0087_A12.b : Ggccatgaaantggataatcattaatgctgaaacatccacgggctgtttgtttgctggat
LVRM1_0203_D08.b :                                                             
OVRM1_0073_A10.b :                                                             


20110601C-015200 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
OVR01_0019_A07.b : atcatcacttgggtaaacgaaggtgtaatgcagaccagggtgggaatttgaacctgcctg
BFLT1_0087_A12.b : catccctgggtaaacgaggtgttatggcaacaagtttggattgaacctgctaaatggcta
LVRM1_0203_D08.b :                                                             
OVRM1_0073_A10.b :                                                             


20110601C-015200 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
OVR01_0019_A07.b : aaaatgctatttaccaaattctttaaaaaatgggtggtgggcttgggggatggaatattt
BFLT1_0087_A12.b : taacaaatctaaaaatgggggggcggggaagaattctgaaaaaaccttaatattttcgtg
LVRM1_0203_D08.b :                                                             
OVRM1_0073_A10.b :                                                             


20110601C-015200 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
OVR01_0019_A07.b : tggcaaaaaacccagctttgatttcatttttttcttggtggcatttttttacccccccgg
BFLT1_0087_A12.b : gtttaccccgggaatttccaaaaaaaaggggacctttccccctttccccaagggttataa
LVRM1_0203_D08.b :                                                             
OVRM1_0073_A10.b :                                                             


20110601C-015200 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 936
OVR01_0019_A07.b : gggggggaaaaatttttttcccccaaaa                               
BFLT1_0087_A12.b : ttttgtggaaaaggggaaagggtattttttg                            
LVRM1_0203_D08.b :                                                             
OVRM1_0073_A10.b :