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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-015204

Length: 1,051

Sequence:  [FASTA format sequence]
TTGACTTTGG GCTCCCCTCA GAACCATATA TTACAAGCTC CAGGCGAGCC AGCCCCACCA
TGGGCAGAAA TGAGAAGTCC CCACCCACCA TGGACAGAGG TGAGGGGCCC CCCTCCCGGT
ATCATCCCCG AGAATGGGCT AGTGAGGAGA CTCAACACCG TGCCCAACCT GTCCCGGGTG
ATCTGGGTCA AGACACCCAA GCCAGGCAAC CCTAGCTCTG AGGAGCCAAG CCCACAGGAG
GTCCCCGGCT GCAAGCAGGA GTTGCCTGAG CCTTTGGCCT CAGGTGGGAA GCCGCGGAAG
GGCAAGAGAC AGGGCAGTCA GGCCAAGAAG AGCGAGGTGA GCCCACCCCC CCAGTCCCCA
GCCTGCCTTG AGGCTCCCAG TGCCAAGGGC CAGACCCCCA GCCCCAAGCA GCCAGGCAAG
GCCCTGGAGC CTCCCAGAGT GGACAGCTGT GCCGAGGCTG GAGAGGGGAG CCGGGGGGCC
CAACCAGGAC CAGGCTGGGC TGGCAGCCCC AAAGCTGACA AGGAGAAGGG CAGCTCCTGG
CGAAACTGGC CAGGTGAGAC AAAGGTACGG CCTCTGGAGC AGGAGTCTGT GCAGCCCCCA
GGCCCAGCAA GGCCACAGAG CTTGCCACAG GGCAAGGGCC GCAGCCGCCG GAGCCGCAAC
AAGCAGGAGA AGTCAGCCTC CTCCTTGGAC GATGTGTTCC TGCCTAAGGA CATGGACGGG
GCGGAGATGG ATGAGACTGA CCGGGAGGTG GAGTACTTCA AGAGGTTCTG TTTGGATTCT
GCAAAGCAAA CACGTCAGAA AGTTGCCGTG AACTGGACCA ACTTCAGCCT CAAGAAAACC
ACTCCCAGCA CAGCTCAGTG AGCCCCTTCC AGATTGAGCT TCTTCAGGGT GTCCTGAGAC
CCCAGTTGCC GGCTGAAGGT CTACAGTTTT TTTCTCACAT CCCCATCCAC CTGCCCCAGA
CCCTCCCCAC CATCCCGGAC CAACCAAAAG CTGAATAGAT GCCGTGCATG CTGGGGGCCC
CTCGGGAACC TCTGCAGAAG CCGCTTTCCT G

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		FAM193B	family with sequence similarity 193, member B [Homo sapiens].	499	e-141
		FAM193A	hypothetical protein LOC8603 [Homo sapiens].	102	8e-22
		PRB2	basic salivary proline-rich protein 2 [Homo sapiens].	51.6	1e-06
		PRB4	basic salivary proline-rich protein 4 precursor [Homo sapiens].	51.6	1e-06
		REXO1	RNA exonuclease 1 homolog [Homo sapiens].	50.4	3e-06

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Fam193b	hypothetical protein LOC212483 [Mus musculus].	425	e-119
		Fam193b	hypothetical protein LOC212483 [Mus musculus].	425	e-119
		Fam193a	hypothetical protein LOC231128 [Mus musculus].	106	3e-23

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC479273	PREDICTED: hypothetical protein XP_847130 isoform 2 [Canis familiaris].	470	e-132
		LOC479273	PREDICTED: hypothetical protein XP_536416 isoform 1 [Canis familiaris].	470	e-132
		LOC479273	PREDICTED: hypothetical protein XP_860165 isoform 3 [Canis familiaris].	117	2e-26	O
		LOC610546	PREDICTED: similar to Protein C4orf008 homolog [Canis familiaris].	109	4e-24
		LOC487670	PREDICTED: hypothetical protein XP_544794 [Canis familiaris].	52.4	7e-07

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		FAM193B	hypothetical protein LOC538655 [Bos taurus].	521	e-148

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		FAM193B	hypothetical protein LOC100511495 [Sus scrofa].	558	e-159
		LOC100624160	PREDICTED: protein piccolo-like [Sus scrofa].	50.4	2e-06

Alignment:      TOP

20110601C-015204 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
THY01_0204_B09.b : ggcatttanggtgcctanntagacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0007_H08.b :                              gggggggcctactxxxxxxxxxxxxxxxxxx
OVR01_0087_E04.b :                                      nnnggcttggactatgacxxxxx
OVR01_0011_D12.b :                    cagacatatgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-015204 : ..........................TTGACTTTGGGCTCCCCTCAGAACCATATATTAC
                   ---------+---------+---------+---------+---------+---------+ 34
THY01_0204_B09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxTTGACTTTGGGCTCCCCTCAGAACCATATATTAC
OVR01_0007_H08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0087_E04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtac
OVR01_0011_D12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-015204 : AAGCTCCAGGCGAGCCAGCCCCACCATGGGCAGAAATGAGAAGTCCCCACCCACCATGGA
                   ---------+---------+---------+---------+---------+---------+ 94
THY01_0204_B09.b : AAGCTCCAGGCGAGCCAGCCCCACCATGGGCAGAAATGAGAAGTCCCCACCCACCATGGA
OVR01_0007_H08.b : actgTCCAGGCGAGCCAGCCCCACCATGGGCAGAAATGAGAAGTCCCCACCCACCATGGA
OVR01_0087_E04.b : aagcTCCAGGCGAGCCAGCCCCACCATGGGCAGAAATGAGAAGTCCCCACCCACCATGGA
OVR01_0011_D12.b : actgTCCAGGCGAGCCAGCCCCACCATGGGCAGAAATGAGAAGTCCCCACCCACCATGGA


20110601C-015204 : CAGAGGTGAGGGGCCCCCCTCCCGGTATCATCCCCGAGAATGGGCTAGTGAGGAGACTCA
                   ---------+---------+---------+---------+---------+---------+ 154
THY01_0204_B09.b : CAGAGGTGAGGGGCCCCCCTCCCGGTATCATCCCCGAGAATGGGCTAGTGAGGAGACTCA
OVR01_0007_H08.b : CAGAGGTGAGGGGCCCCCCTCCCGGTATCATCCCCGAGAATGGGCTAGTGAGGAGACTCA
OVR01_0087_E04.b : CAGAGGTGAGGGGCCCCCCTCCCGGTATCATCCCCGAGAATGGGCTAGTGAGGAGACTCA
OVR01_0011_D12.b : CAGAGGTGAGGGGCCCCCCTCCCGGTATCATCCCCGAGAATGGGCTAGTGAGGAGACTCA


20110601C-015204 : ACACCGTGCCCAACCTGTCCCGGGTGATCTGGGTCAAGACACCCAAGCCAGGCAACCCTA
                   ---------+---------+---------+---------+---------+---------+ 214
THY01_0204_B09.b : ACACCGTGCCCAACCTGTCCCGGGTGATCTGGGTCAAGACACCCAAGCCAGGCAACCCTA
OVR01_0007_H08.b : ACACCGTGCCCGACCTGTCCCGGGTGATCTGGGTCAAGACACCCAAGCCAGGCAACCCTA
OVR01_0087_E04.b : ACACCGTGCCCAACCTGTCCCGGGTGATCTGGGTCAAGACACCCAAGCCAGGCAACCCTA
OVR01_0011_D12.b : ACACCGTGCCCAACCTGTCCCGGGTGATCTGGGTCAAGACACCCAAGCCAGGCAACCCTA


20110601C-015204 : GCTCTGAGGAGCCAAGCCCACAGGAGGTCCCCGGCTGCAAGCAGGAGTTGCCTGAGCCTT
                   ---------+---------+---------+---------+---------+---------+ 274
THY01_0204_B09.b : GCTCTGAGGAGCCAAGCCCACAGGAGGTCCCCGGCTGCAAGCAGGAGTTGCCTGAGCCTT
OVR01_0007_H08.b : GCTCTGAGGAACCAAGCCCACAGGAGGTCCCCGGCTGCAAGCAGGAGTTGCCTGAGCCTT
OVR01_0087_E04.b : GCTCTGAGGAGCCAAGCCCACAGGAGGTCCCCGGCTGCAAGCAGGAGTTGCCTGAGCCTT
OVR01_0011_D12.b : GCTCTGAGGAACCAAGCCCACAGGAGGTCCCCGGCTGCAAGCAGGAGTTGCCTGAGCCTT


20110601C-015204 : TGGCCTCAGGTGGGAAGCCGCGGAAGGGCAAGAGACAGGGCAGTCAGGCCAAGAAGAGCG
                   ---------+---------+---------+---------+---------+---------+ 334
THY01_0204_B09.b : TGGCCTCAGGTGGGAAGCCGCGGAAGGGCAAGAGACAGGGCAGTCAGGCCAAGAAGAGCG
OVR01_0007_H08.b : TGGCCTCAGGTGGGAAGCCGCGGAAGGGCAAGAGACAGGGCAGTCAGGCCAAGAAGAGCG
OVR01_0087_E04.b : TGGCCTCAGGTGGGAAGCCGCGGAAGGGCAAGAGACAGGGCAGTCAGGCCAAGAAGAGCG
OVR01_0011_D12.b : TGGCCTCAGGTGGGAAGCCGCGGAAGGGCAAGAGACAGGGCAGTCAGGCCAAGAAGAGCG


20110601C-015204 : AGGTGAGCCCACCCCCCCAGTCCCCAGCCTGCCTTGAGGCTCCCAGTGCCAAGGGCCAGA
                   ---------+---------+---------+---------+---------+---------+ 394
THY01_0204_B09.b : AGGTGAGCCCACCCCCCCAGTCCCCAGCCTGCCTTGAGGCTCCCAGTGCCAAGGGCCAGA
OVR01_0007_H08.b : AGGTGAGCCCACCCCCCCAGTCCCCAGCCTGCCTTGAGGCTCCCAGTGCCAAGGGCCAGA
OVR01_0087_E04.b : AGGTGAGCCCACCCCCCCAGTCCCCAGCCTGCCTTGAGGCTCCCAGTGCCAAGGGCCAGA
OVR01_0011_D12.b : AGGTGAGCCCACCCCCCCAGTCCCCAGCCTGCCTTGAGGCTCCCAGTGCCAAGGGCCAGA


20110601C-015204 : CCCCCAGCCCCAAGCAGCCAGGCAAGGCCCTGGAGCCTCCCAGAGTGGACAGCTGTGCCG
                   ---------+---------+---------+---------+---------+---------+ 454
THY01_0204_B09.b : CCCCCAGCCCCAAGCAGCCAGGCAAGGCCCTGGAGCCTCCCAGAGTGGACAGCTGTGCCG
OVR01_0007_H08.b : CCCCCAGCCCCAAGCAGCCAGGCAAGGCCCTGGAGCCTCCCAGAGTGGACAGCTGTGCCG
OVR01_0087_E04.b : CCCCCAGCCCCAAGCAGCCAGGCAAGGCCCTGGAGCCTCCCAGAGTGGACAGCTGTGCCG
OVR01_0011_D12.b : CCCCCAGCCCCAAGCAGCCAGGCAAGGCCCTGGAGCCTCCCAGAGTGGACAGCTGTGCCG


20110601C-015204 : AGGCTGGAGAGGGGAGCCGGGGGGCCCAACCAGGACCAGGCTGGGCTGGCAGCCCCAAAG
                   ---------+---------+---------+---------+---------+---------+ 514
THY01_0204_B09.b : AGGCTGGAGAGGGGAGCCGGGGGGCCCAACCAGGACCAGGCTGGGCTGGCAGCCCCAAAG
OVR01_0007_H08.b : AGGCTGGAGAGGGGAGCCGGGGGGCCCAACCAGGACCAGGCTGGGCTGGCAGCCCCAAAG
OVR01_0087_E04.b : AGGCTGGAGAGGGGAGCCGGGGGGCCCAACCAGGACCAGGCTGGGCTGGCAGCCCCAAAG
OVR01_0011_D12.b : AGGCTGGAGAGGGGAGCCGGGGGGCCCAACCAGGACCAGGCTGGGCTGGCAGCCCCAAAG


20110601C-015204 : CTGACAAGGAGAAGGGCAGCTCCTGGCGAAACTGGCCAGGTGAGACAAAGGTACGGCCTC
                   ---------+---------+---------+---------+---------+---------+ 574
THY01_0204_B09.b : CTGACAAGGAGAAGGGCAGCTCCTGGCGAAACTGGCCAGGTGAGACAAAGGTACGGCCTC
OVR01_0007_H08.b : CTGACAAGGAGAAGGGCAGCTCCTGGCGAAACTGGCCAGGTGAGACAAAGGTACGGCCTC
OVR01_0087_E04.b : CTGACAAGGAGAAGGGCAGCTCCTGGCGAAACTGGCCAGGTGAGACAAAGGTACGGCCTC
OVR01_0011_D12.b : CTGGCAAGGAGAAGGGCAGCTCCTGGCGAAACTGGCCAGGTGAGACAAAGGTACGGCCTC


20110601C-015204 : TGGAGCAGGAGTCTGTGCAGCCCCCAGGCCCAGCAAGGCCACAGAGCTTGCCACAGGGCA
                   ---------+---------+---------+---------+---------+---------+ 634
THY01_0204_B09.b : TGGAGCAGGAGTCTGTGCAGCCCCCAGGCCCAGCAAGGCCACAGAGCTTGCCACAGGGCA
OVR01_0007_H08.b : TGGAGCAGGAGTCTGTGCAGCCCCCAGGCCCAGCAAGGCCACAGAGCTTGCCACAGGGCA
OVR01_0087_E04.b : TGGAGCAGGAGTCTGTGCAGCCCCCAGGCCCAGCAAGGCCACAGAGCTTGCCACAGGGCA
OVR01_0011_D12.b : TGGAGCAGGAGTCTGTGCAGCCCCCAGGCCCAGCAAGGCCACAGAGCTTGCCACAGGGCA


20110601C-015204 : AGGGCCGCAGCCGCCGGAGCCGCAACAAGCAGGAGAAGTCAGCCTCCTCCTTGGACGATG
                   ---------+---------+---------+---------+---------+---------+ 694
THY01_0204_B09.b : AGGGCCGCAGCCGCCGGAGCCGCAACAAGCAGGAGAAGTCAGCCTCCTCCTTGGACGATG
OVR01_0007_H08.b : AGGGCCGCAGCCGCCGGAGCCGCAACAAGCAGGAGAAGTCAGCCTCCTCCTTGGACGATG
OVR01_0087_E04.b : AGGGCCGCAGCCGCCGGAGCCGCAACAAGCAGGAGAAGTCAGCCTCCTCCTTGGACGATG
OVR01_0011_D12.b : AGGGCCGCAGCCGCCGGAGCCGCAACAAGCAGGAGAAGTCAGCCTCCTCCTTGGACGATG


20110601C-015204 : TGTTCCTGCCTAAGGACATGGACGGGGCGGAGATGGATGAGACTGACCGGGAGGTGGAGT
                   ---------+---------+---------+---------+---------+---------+ 754
THY01_0204_B09.b : TGTTCCTGCCTAAGGACATGGACGGGGCGGAGATGGATGAGACTGACCGGGAGGTGGAGT
OVR01_0007_H08.b : TGTTCCTGCCTAAGGACATGGACGGGGCGGAGATGGATGAGACTGACCGGGAGGTGGAGT
OVR01_0087_E04.b : TGTTCCTGCCTAAGGACATGGACGGGGCGGAGATGGATGAGACTGACCGGGAGGTGGAGT
OVR01_0011_D12.b : TGTTCCTGCCTAAGGACATGGACGGGGCGGAGATGGATGAGACTGACCGGGAGGTGGAGT


20110601C-015204 : ACTTCAAGAGGTTCTGTTTGGATTCTGCAAAGCAAACACGTCAGAAAGTTGCCGTGAACT
                   ---------+---------+---------+---------+---------+---------+ 814
THY01_0204_B09.b : ACTTCAAGAGGTTCTGTTTGGATTCTGCAAAGCAAACACGTCAGAAAGTTGCCGTGAACT
OVR01_0007_H08.b : ACTTCAAGAGGTTCTGTTTGGATTCTGCAAAGCAAACACGTCAGAAAGTTGCCGTGAACT
OVR01_0087_E04.b : ACTTCAAGAGGTTCTGTTTGGATTCTGCAAAGCAAACACGTCAGAAAGTTGCCGTGAACT
OVR01_0011_D12.b : ACTTCAAGAGGTTCTGTTTGGATTCTGCAAAGCAAACACGTCAGAAAGTTGCCGTGAACT


20110601C-015204 : GGACCAACTTCAGCCTCAAGAAAACCACTCCCAGCACAGCTCAGTGAGCCCCTTCCAGAT
                   ---------+---------+---------+---------+---------+---------+ 874
THY01_0204_B09.b : GGACCAACTTCAGCCTCAAGAAAACCACTCCCAGCACAGCTCAGTGAGCCCCTTTCAGAT
OVR01_0007_H08.b : GGACCAACTTCAGCCTCCAGAAAACCACTCCCCGCACAGCTCAGTGAGCCCCTTCCAGAT
OVR01_0087_E04.b : GGACCAACTTCAGCCTCAAGAAAACCACTCCCAGCACAGCTCAGTGAGCCCCTTTCAGAT
OVR01_0011_D12.b : GGACCAACTTCAGCCTCAAGAAAACCACTCCCAGCACAGCTCAGTGAGCCCCTTCCAGAT


20110601C-015204 : TGAGCTTCTTCAGGGTGTCCTGAGACCCCAGTTGCCGGCTGAAGGTCTACAGTTTTTTTC
                   ---------+---------+---------+---------+---------+---------+ 934
THY01_0204_B09.b : TGAACTTCTTCAGGGTGTCCTGAGACCCCAGTTGCCGGCTGAAAGTCTACAGTTTTTTTC
OVR01_0007_H08.b : TGAGCTTCTTCAGGGTGTCCTGAGACCCCATTTGCCGGCTGAAGGCCTACCGTTTTTTcc
OVR01_0087_E04.b : TGAGCTTCTTCAGGGTGTCCTGAGACCCCAGTTTGCCGCTGAAGGTCTACAGTTTTTTTC
OVR01_0011_D12.b : TGAGCTTCTTCAGGGGTGTCTGAGACCCCAGTTGCCGGCTGAAGGTCTACAGTTTTTTCC


20110601C-015204 : T*CACATCCCCATCCACCTGCCCCAGACCCTCCCCACCATCCCGGACCAACCAAAAGCTG
                   ---------+---------+---------+---------+---------+---------+ 993
THY01_0204_B09.b : TCCACATCCCCCTCCACCTGCCCAAGACCCTCCCCACCATCCCGGACCAACcaaaagctg
OVR01_0007_H08.b : tcaacctccccctcccccctgcccaggaccctcccccaccatccccggaccaacccaaag
OVR01_0087_E04.b : TTCACATCCCCATCCACCTGCCCCAGACCCTTCCCCACATCCCGGACCAAC*AAAAGCTG
OVR01_0011_D12.b : T*CACATCCCCATCCACCTGCCCAAGACCCTCCCAACAATCCTGGACCAACCAAAAGCTG


20110601C-015204 : AATAGATGCCGTGCATGCTGGGGGCCCCTCGGGAACCTCTGCAGAAGCCGCTTTCCTG..
                   ---------+---------+---------+---------+---------+---------+ 1051
THY01_0204_B09.b : aataaatggccgtggatggttgggggcccctcgggaacctctgccaaacccccttccttg
OVR01_0007_H08.b : cctgaattaaatgcccgtgcatggttgggggccccctccgggaactcctgcaaaaacccc
OVR01_0087_E04.b : AATAAATGCCGTGCATGCTTGGGGCCCtcgggactctgcagagccgcttctggtgctacc
OVR01_0011_D12.b : AATAGATGCCGTGCATGCTGGGGGCCCCTCGGGAACCTCTGCAGAAGCCGCTTTCCTGgt


20110601C-015204 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1051
THY01_0204_B09.b : gggctacgccacccctcccttcaaaaccccggggaactgggctggggcctggggggcttt
OVR01_0007_H08.b : ccttcctggttgcttcccccaccccccccctcccaagcccccggggaactggggccttgg
OVR01_0087_E04.b : caccctcactcaaaccccgggactgggctggctgtgggtttggggctgatgtactgttgg
OVR01_0011_D12.b : gctacgc                                                    


20110601C-015204 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1051
THY01_0204_B09.b : ggggggggtgaaaggggactgggttgaacccccaccccccggcccttttttttttgg  
OVR01_0007_H08.b : ccctggggggggtttggggggggtttgatggggtaacttggtttgggcccccccaccccc
OVR01_0087_E04.b : ccacctgctcctttgggttagatttttgggggtttttggtggtggtttttccactcttac
OVR01_0011_D12.b :                                                             


20110601C-015204 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1051
THY01_0204_B09.b :                                                             
OVR01_0007_H08.b : ctggcccttctccttttttgggtgt                                  
OVR01_0087_E04.b : cttgaacgggaaaactttctgcgaaaataac                            
OVR01_0011_D12.b :