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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-016473

Length: 1,036

Sequence:  [FASTA format sequence]
TAGAAGGCAG TGGCTGCAGG TGGCTGTCGG TTTAAGCAGT TGCGTGCGCT CTCTCTCTCT
CTCTCTCTCT TCTGGGACTC TCGGGAGCTG CGGCTCCGGC GCCAGGTGGC AAGACGCGGG
TCTCGGAGAC GCCAGCCTCC GTGCATCCCA CTGTGGTTCG GGGGTGGTGG TTTTTAAGTA
CGGAAGGGCC CTTGGTTCCA CCGGAGGAAT CTGCCGTGGG TCCCCGAGTT CCTGGAGCTG
TCTTCCGTAT ACCTGAGTCA GACCAGAGCA CAGTCCGAAG GGCGGGCAGG AGGGCTCATC
TGTGTACTGT GTGCAGTAAA ACATTCCAGC CATCTGTCAG GAAAGTGTTC CCACTATGGA
TTTCAAGTCT GTCTCAAAGC AGCAGTCCAG GACCAGGACC TCTTCTAGGG AGATGAGAAG
ACTGAGTCCT ACAAACATTA AATGATTTTC TCAAGCAGCC TCAGTGCATA AGAATTGGGG
TCCAGGCCAC CACTCCGTCA GCCTGCCTCT AGGTGTGAAG GAGCGAGTGC CTGATCAGAA
TGGCTGTGGG ATGGTTTTAC CTGTCGGCCC TGGCGCTGTT CTCCCTGGGC TCCATGTGCA
TCCTCTCCAC CATCTATTGG ATGCGGTACT GGCACAAAGG CTTTGCCTGG GATGGCACCA
TACTCACGTT CAACTGGCAC CCGGTGCTCA TGGTGACTGG CATGGTGGTG CTCTACAGTG
CTGCGTCGCT GGCGTACCGC CTGCCCCAGT CATGGGTAGG GCCCAAGCTG CCCTGGAAGT
TGGGCCACGC AGCCATGCAC CTGATGGCCT TCATCCTGAC TGTGCTGGGG CTGGCGGCCG
TCTTTAACTT TCACAACCAC GAGAAGATCC CCAACCTCTA CTCCCTGCAC AGCTGGCTGG
GCATCACCAC CGTCTTCCTC TTTCGCCTGC AGTGGGTCTT GGGCTTTGTG GTCTTTCTGC
TGCCCTGGGC GTCTGTGCCG CTGCGCAGCC TCTTAAACCC ATCCACGTCT TCTTTGGACC
CTCATTCTCT CTCTGG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CYBASC3	cytochrome b ascorbate-dependent protein 3 isoform 1 [Homo sapiens].	261	3e-70	O
		CYBASC3	cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo sapiens].	251	2e-67	O
		CYBASC3	cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo sapiens].	251	2e-67	O
		CYBRD1	cytochrome b reductase 1 isoform 1 [Homo sapiens].	140	1e-33	O
		CYB561	cytochrome b561 [Homo sapiens].	103	3e-22	O
		CYB561	cytochrome b561 [Homo sapiens].	103	3e-22	O
		CYB561	cytochrome b561 [Homo sapiens].	103	3e-22	O
		CYBRD1	cytochrome b reductase 1 isoform 2 [Homo sapiens].	60.5	3e-09	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Cybasc3	cytochrome b ascorbate-dependent protein 3 [Mus musculus].	252	2e-67	O
		Cybrd1	cytochrome b reductase 1 [Mus musculus].	140	2e-33	O
		Cyb561	cytochrome b561 [Mus musculus].	106	3e-23	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC483799	PREDICTED: similar to cytochrome b, ascorbate dependent 3 protein [Canis familiaris].	250	4e-67	O
		LOC478796	PREDICTED: similar to cytochrome b reductase 1 [Canis familiaris].	152	5e-37	O
		LOC610631	PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis familiaris].	107	2e-23	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		CYBASC3	cytochrome b ascorbate-dependent protein 3 [Bos taurus].	281	9e-77	O
		CYBRD1	cytochrome b reductase 1 [Bos taurus].	158	6e-39	O
		LOC534257	PREDICTED: cytochrome b reductase 1-like [Bos taurus].	158	6e-39	O
		CYB561	cytochrome b561 [Bos taurus].	104	1e-22	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100519643	PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 2 [Sus scrofa].	316	2e-87	O
		LOC100519643	PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 1 [Sus scrofa].	316	2e-87	O
		CYBRD1	cytochrome b reductase 1 [Sus scrofa].	158	4e-39	O
		CYB561	cytochrome b561 [Sus scrofa].	105	3e-23	O

Alignment:      TOP

20110601C-016473 : ......................................................TAGAAG
                   ---------+---------+---------+---------+---------+---------+ 6
ITT01_0029_H11.b : nagatgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAGAAG
MLN01_0058_B11.b :                                                             


20110601C-016473 : GCAGTGGCTGCAGGTGGCTGTCGGTTTAAGCAGTTGCGTGCGCTCTCTCTCTCTCTCTCT
                   ---------+---------+---------+---------+---------+---------+ 66
ITT01_0029_H11.b : GCAGTGGCTGCAGGTGGCTGTCGGTTTAAGCAGTTGCGTGCGctctctctctctctctct
MLN01_0058_B11.b :                                            nggctaggacttgacag


20110601C-016473 : CTCTTCTGGGACTCTCGGGAGCTGCGGCTCCGGCGCCAGGTGGCAAGACGCGGGTCTCGG
                   ---------+---------+---------+---------+---------+---------+ 126
ITT01_0029_H11.b : ctctTCTGGGACTCTCGGGAGCTGCGGCTCCGGCGCCAGGTGGCAAGACGCGGGTCTCGG
MLN01_0058_B11.b : tttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxt


20110601C-016473 : AGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGGGGGTGGTGGTTTTTAAGTACGGAAG
                   ---------+---------+---------+---------+---------+---------+ 186
ITT01_0029_H11.b : AGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGGGGGTGGTGGTTTTTAAGTACGGAAG
MLN01_0058_B11.b : agaaggcagtggctgcaggtggctgtcggtttaagcaGTGGTGGTTTTTAAGTACGGAAG


20110601C-016473 : GGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCCTGGAGCTGTCTTCC
                   ---------+---------+---------+---------+---------+---------+ 246
ITT01_0029_H11.b : GGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCCTGGAGCTGTCTTCC
MLN01_0058_B11.b : GGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCCTGGAGCTGTCTTCC


20110601C-016473 : GTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGGCAGGAGGGCTCATCTGTGTA
                   ---------+---------+---------+---------+---------+---------+ 306
ITT01_0029_H11.b : GTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGGCAGGAGGGCTCATCTGTGTA
MLN01_0058_B11.b : GTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGGCAGGAGGGCTCATCTGTGTA


20110601C-016473 : CTGTGTGCAGTAAAACATTCCAGCCATCTGTCAGGAAAGTGTTCCCACTATGGATTTCAA
                   ---------+---------+---------+---------+---------+---------+ 366
ITT01_0029_H11.b : CTGTGTGCAGTAAAACATTCCAGCCATCTGTCAGGAAAGTGTTCCCACTATGGATTTCAA
MLN01_0058_B11.b : CTGTGTGCAGTAAAACATTCCAGCCATCTGTCAGGAAAGTGTTCCCACTATGGATTTCAA


20110601C-016473 : GTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCTCTTCTAGGGAGATGAGAAGACTGAG
                   ---------+---------+---------+---------+---------+---------+ 426
ITT01_0029_H11.b : GTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCTCTTCTAGGGAGATGAGAAGACTGAG
MLN01_0058_B11.b : GTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCTCTTCTAGGGAGATGAGAAGACTGAG


20110601C-016473 : TCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGGGTCCAGG
                   ---------+---------+---------+---------+---------+---------+ 486
ITT01_0029_H11.b : TCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGGGTCCAGG
MLN01_0058_B11.b : TCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGGGTCCAGG


20110601C-016473 : CCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGAATGGCTG
                   ---------+---------+---------+---------+---------+---------+ 546
ITT01_0029_H11.b : CCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGAATGGCTG
MLN01_0058_B11.b : CCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGAATGGCTG


20110601C-016473 : TGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCT
                   ---------+---------+---------+---------+---------+---------+ 606
ITT01_0029_H11.b : TGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCT
MLN01_0058_B11.b : TGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCT


20110601C-016473 : CCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCA
                   ---------+---------+---------+---------+---------+---------+ 666
ITT01_0029_H11.b : CCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCA
MLN01_0058_B11.b : CCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCA


20110601C-016473 : CGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGT
                   ---------+---------+---------+---------+---------+---------+ 726
ITT01_0029_H11.b : CGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGT
MLN01_0058_B11.b : CGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGT


20110601C-016473 : CGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCC
                   ---------+---------+---------+---------+---------+---------+ 786
ITT01_0029_H11.b : CGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCC
MLN01_0058_B11.b : CGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCC


20110601C-016473 : ACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTA
                   ---------+---------+---------+---------+---------+---------+ 846
ITT01_0029_H11.b : ACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTA
MLN01_0058_B11.b : ACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTA


20110601C-016473 : ACTTTCACAACCACGAGAAGATCCCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCA
                   ---------+---------+---------+---------+---------+---------+ 906
ITT01_0029_H11.b : ACTTTCACAACCACGAAGAGATCCCCAACCTCTACTCCCTGCAAAGCTGGCTGGGCATCA
MLN01_0058_B11.b : ACTTTCACAACCACGAGAAGATCCCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCA


20110601C-016473 : CCACCGTCTTCCTCTTTCGCCTGCAGTGGGTCTTGGGCTTTGTGGTCTTTCTGCTGCCCT
                   ---------+---------+---------+---------+---------+---------+ 966
ITT01_0029_H11.b : CCACCGTCTTtcctcttccctggccgtggttcttggggcttgggggtctttctgctgccc
MLN01_0058_B11.b : CCACCGTCTTCCTCTTTCGCCTGCAGTGGGTCTTGGGCTTTGTGGTCTTTCTGCTGCCCT


20110601C-016473 : GGGCGTCTGTGCCGCTGCGCAGCCTCTTAAACCCATCCACGTCTTCTTTGGACCCTCATT
                   ---------+---------+---------+---------+---------+---------+ 1026
ITT01_0029_H11.b : ctgggcgtttgtgcggctgcccaaacttccttaaacccatccacgtcctttttgggaacc
MLN01_0058_B11.b : GGGCGTCTGTGCCGCTGCGCAGCCTCTTAAACCCATCCACGTCTTCTTTGGACCCTCATT


20110601C-016473 : CTCTCTCTGG..................................................
                   ---------+---------+---------+---------+---------+---------+ 1036
ITT01_0029_H11.b : tccctttctctctctggccatttggttcggtcatttccggcatcatggaaaacctcttct
MLN01_0058_B11.b : CTCTCTCTGGccatgcctctgtcattttcggcatcaatgaaaactcttcctcagtttgaa


20110601C-016473 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1036
ITT01_0029_H11.b : tcagttttaaaagtggcccctctttaatactcaacctggccggggaagcgcctcttcgcc
MLN01_0058_B11.b : aaatgggaccctttcttattccacctgccccgggaggccgtctttccaaacatgccggga


20110601C-016473 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1036
ITT01_0029_H11.b : aaaattgccggaaacctggtgggggttcttgggcctggggggctccaaattctaagggcc
MLN01_0058_B11.b : atccggggggggcctttgggcttctgggggtctatatcttaagggctctctcttgaaaaa


20110601C-016473 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1036
ITT01_0029_H11.b : tccttttggaaacccccaaacacggggctctcagcccaaaacaacacccttt       
MLN01_0058_B11.b : ccccaaacccagggctccaggcccaagaaaaaaccgt