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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20110601S-067317

Length: 748

Sequence:  [FASTA format sequence]
CXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXCTCGA CACCGACGCC GCTGCCGCCG CAGGCCCCTC CACGCCCACA CCCCCTACCC
ACTGCCCAGC CATGGAGGCC ATCAAGAAGA AGATGCAGAT GCTGAAGCTG GACAAGGAGA
ACGCCATCGA CCGGGCCGAG CAGGCGGAGT CGGATAAGAA AGCTGCTGAG GAGAAGTGCA
AGCAGGTGGA GGAGGAGCTG ACGCACCTCC AGAAGAAGCT GAAGGGGACA GAGGATGAGC
TGGACAAATA CTTCCAGAAC CTGAAGGACG CGCAGGAAAA GCTGGAGTTG AGCAAGAAGA
AAGCCTCCGA CGCCGAAGGG GATGTAGCAG CTCTTAATCG GCGCATCCAA CTCGTTGAGG
AGGAGTTGGA CAGGGCTCAG GAACGACTGG CCACAGCCCT GCAGAAGCTT GAGGAGGGAG
AAAGGGGTGG GGATGAGATC GAGAGATGAA TGAATGGGAT GGAAAAGGCG GGCCATTAAA
AAGAAGAAAA GATTGGGGTT CTAGAAAAGC TGTTGAAGGA AGTCAGGCTC GTGGCTATGG
AGGCGAACCG GAATACGGGG ATAAATAATG GTATGTGGGT GATCGGGAGG GGTAGAGTAT
GTGGGAATAA AAACTGTGGG AAGGCGTGGC ATTATGGTTT GGGTGCCTGT ATTTGTGGTC
GTATGGGGGT GGTTTATGTG TATATTGTGG TTGGTGTAAG GAAGGGAAGT ACGTATTTTG
ATTTGATGTT AGTGGAATGT CATGGTGGTC CTGAGACGGG TCGCACGGG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain isoform 1 [Homo sapiens].	207	6e-54	O
		TPM1	tropomyosin alpha-1 chain isoform 4 [Homo sapiens].	187	1e-47	O
		TPM1	tropomyosin alpha-1 chain isoform 1 [Homo sapiens].	187	1e-47	O
		TPM1	tropomyosin alpha-1 chain isoform 3 [Homo sapiens].	187	1e-47	O
		TPM1	tropomyosin alpha-1 chain isoform 5 [Homo sapiens].	187	1e-47	O
		TPM3	tropomyosin alpha-3 chain isoform 1 [Homo sapiens].	181	5e-46	O
		TPM2	tropomyosin beta chain isoform 1 [Homo sapiens].	180	1e-45	O
		TPM2	tropomyosin beta chain isoform 2 [Homo sapiens].	180	1e-45	O
		TPM1	tropomyosin alpha-1 chain isoform 7 [Homo sapiens].	147	7e-36	O
		TPM1	tropomyosin alpha-1 chain isoform 2 [Homo sapiens].	147	7e-36	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tpm1	tropomyosin alpha-1 chain isoform 9 [Mus musculus].	187	9e-48	O
		Tpm1	tropomyosin alpha-1 chain isoform 5 [Mus musculus].	187	9e-48	O
		Tpm1	tropomyosin alpha-1 chain isoform 4 [Mus musculus].	187	9e-48	O
		Tpm1	tropomyosin alpha-1 chain isoform 1 [Mus musculus].	187	9e-48	O
		Tpm1	tropomyosin alpha-1 chain isoform 3 [Mus musculus].	187	9e-48	O
		Tpm2	tropomyosin beta chain [Mus musculus].	182	3e-46	O
		Tpm3	tropomyosin alpha-3 chain [Mus musculus].	180	1e-45	O
		Tpm1	tropomyosin alpha-1 chain isoform 2 [Mus musculus].	148	5e-36	O
		Tpm1	tropomyosin alpha-1 chain isoform 10 [Mus musculus].	73.6	2e-13	O
		Tpm1	tropomyosin alpha-1 chain isoform 8 [Mus musculus].	73.6	2e-13	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC609879	PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis familiaris].	212	3e-55	O
		LOC609879	PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis familiaris].	212	3e-55	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform 10 [Canis familiaris].	187	1e-47	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform 24 [Canis familiaris].	187	1e-47	O
		TPM1	PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis familiaris].	187	1e-47	O
		TPM1	PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 26 [Canis familiaris].	187	1e-47	O
		TPM1	PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 5 [Canis familiaris].	187	1e-47	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform 25 [Canis familiaris].	187	1e-47	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform 1 [Canis familiaris].	187	1e-47	O
		TPM1	PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 6 [Canis familiaris].	187	1e-47	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain [Bos taurus].	209	3e-54	O
		TPM1	tropomyosin alpha-1 chain [Bos taurus].	184	5e-47	O
		LOC788816	PREDICTED: tropomyosin 2, beta-like [Bos taurus].	182	2e-46	O
		TPM2	tropomyosin beta chain [Bos taurus].	182	3e-46	O
		TPM3	tropomyosin alpha-3 chain [Bos taurus].	181	4e-46	O
		LOC788816	PREDICTED: tropomyosin 2, beta-like isoform 1 [Bos taurus].	145	5e-35	O
		LOC100336949	PREDICTED: sarcomeric tropomyosin kappa-like [Bos taurus].	89.7	2e-18
		TPM3	PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].	67	2e-11	O
		TPM3	PREDICTED: tropomyosin 4-like [Bos taurus].	67	2e-11	O
		LOC540799	PREDICTED: tropomyosin 4-like [Bos taurus].	64.3	1e-10	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100620599	PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].	181	3e-46	O
		LOC100620599	PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].	181	3e-46	O
		TPM2	tropomyosin beta chain [Sus scrofa].	181	5e-46	O
		TPM1	tropomyosin alpha-1 chain [Sus scrofa].	180	6e-46	O
		TPM4	tropomyosin alpha-4 chain [Sus scrofa].	76.3	2e-14	O
		TPM3	tropomyosin alpha-3 chain [Sus scrofa].	68.6	4e-12	O