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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20110601S-097049

Length: 997

Sequence:  [FASTA format sequence]
NGGTGXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXGAGCCG
AGCCGAGCGC CCGCCGCTGC CCGCCGCCCG CTGCGTGCGC CTCCGCGCCA TGGCTGGCCT
CAACTCCCTG GAGGCGGTGA AACGCAAGAT CCAGGCCCTG CAGCAGCAGG CGGACGAGGC
AGAGGATCGC GCGCAGGGCC TGCAGCGGGA GCTGGACGGC GAGCGCGAGC GGCGGGAGAA
AGCCGAAGGG GATGTAGCAG CTCTCAATCG GCGCATCCAA CTCGTTGAGG AGGAGTTGGA
CAGGGCTCAG GAACGACTGG CCACAGCCCT GCAGAAGCTT GAGGAGGCAG AAAAGGCTGC
AGATGAGAGC GAGAGAGGAA TGAAGGTGAT AGAAAACCGG GCCATGAAAG ATGAGGAGAA
GATGGAGATT CAGGAGCGTG CCGAGGTGTC TGAACTAAAA TGTGGTGACC TGGAAGAAGA
ACTCAAGAAT GTCACCAACA ACCTGAAGTC GCTAGAGGCT GCATCTGAAA AGTATTCTGA
AAAGGAGGAT AAATATGAAG AAGAGATTAA ACTTCTGTCT GACAAACTGA AAGAGGCTGA
GACCCGTGCT GAATTTGCAG AGAGAACAGT TGCAAAACTG GAAAAGACCA TCGATGACCT
GGAAGAAAAA CTTGCCCAGG CCAAAGAAGA GAACGTGGGC TTACATCAGA CACTGGATCA
GACACTAAAC GAACTAAACT GTATATAACC AAAACAGAAG AGTCTCGTTC CATCAGAAAC
TCCAGAGCTA CGTGTTTTTC TCTTCTCTTG NTAGAAAGTT CTTTTNNGTA TGCCTCTTTG
CTTNGCTGGA AATGTNCAGC AAATTATGAA TACGTGACCN NAATATTTGT ATCAGAAAAG
CTTTGAGCAC AGTTTAATCT ATTCCTTCCT TTTTTTTCAG TGGCACAGCT TTTTCAGCTC
TATTTTATCC TNAATTGCAT TTATCCCTAA GTANGCAGGT TATTTCATAT GAGCATACTC
TTCTAGACTG AGGGCATTGG TTCTGGGAGA ATAGACACCC CACACTTTAA ATACNGACTC
ATGTCTAGTC TGGGTCATTT NAAAGTGAGA ATTCACTGCT GTCCACTATA GAGGCAGGAC
ATCCATAAAT GATGGGATTT TCAGCNNATA AAAAAAAAAG CCATTGGCCC ACTGCAGTCG
CCGCTTAAGA TCTCAAGGCA GCTACGTACA CTTCTGTAAG GTCTAAGGAG CAATAAGCAG
CCGGCCCTTA ACCCCGCGAA ACCACTGATT GGAAACTTTG GTGGCTTGCA CCCCAATACC
CGAAAATTTG GGGTGACCCT CGCCGTTCCA GATAAAAAAG GAATTGTAAA CCGGTCCCCG
TGACCCGGTT CCCCCAATTT TTATACAATC TTCGGCTCCN NNNNNNNNNN NNNNNNNNNN
NNNNNNNNNN NNNTTNNC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain isoform 2 [Homo sapiens].	224	7e-59	O
		TPM4	tropomyosin alpha-4 chain isoform 1 [Homo sapiens].	179	4e-45
		TPM3	tropomyosin alpha-3 chain isoform 4 [Homo sapiens].	159	5e-39	O
		TPM3	tropomyosin alpha-3 chain isoform 5 [Homo sapiens].	149	3e-36	O
		TPM1	tropomyosin alpha-1 chain isoform 6 [Homo sapiens].	146	3e-35	O
		TPM3	tropomyosin alpha-3 chain isoform 2 [Homo sapiens].	142	4e-34	O
		TPM1	tropomyosin alpha-1 chain isoform 2 [Homo sapiens].	141	8e-34
		TPM1	tropomyosin alpha-1 chain isoform 3 [Homo sapiens].	141	8e-34
		TPM3	tropomyosin alpha-3 chain isoform 3 [Homo sapiens].	133	2e-31	O
		TPM2	tropomyosin beta chain isoform 2 [Homo sapiens].	130	2e-30

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tpm4	tropomyosin alpha-4 chain [Mus musculus].	219	3e-57	O
		Tpm1	tropomyosin alpha-1 chain isoform 6 [Mus musculus].	170	2e-42	O
		Tpm1	tropomyosin alpha-1 chain isoform 7 [Mus musculus].	151	7e-37	O
		Tpm1	tropomyosin alpha-1 chain isoform 8 [Mus musculus].	147	2e-35	O
		Tpm1	tropomyosin alpha-1 chain isoform 10 [Mus musculus].	145	5e-35	O
		Tpm1	tropomyosin alpha-1 chain isoform 2 [Mus musculus].	141	7e-34
		Tpm1	tropomyosin alpha-1 chain isoform 3 [Mus musculus].	141	7e-34
		Tpm1	tropomyosin alpha-1 chain isoform 4 [Mus musculus].	123	3e-28
		Tpm2	tropomyosin beta chain [Mus musculus].	122	3e-28
		Tpm1	tropomyosin alpha-1 chain isoform 1 [Mus musculus].	118	6e-27

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC609879	PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis familiaris].	179	4e-45
		LOC609879	PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis familiaris].	179	4e-45
		LOC609879	PREDICTED: similar to tropomyosin 1 (alpha) isoform 3 [Canis familiaris].	176	2e-44
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 19 [Canis familiaris].	170	2e-42	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis familiaris].	159	5e-39	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform 16 [Canis familiaris].	152	6e-37	O
		LOC480137	PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis familiaris].	150	2e-36	O
		TPM1	PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 18 [Canis familiaris].	147	2e-35	O
		LOC480137	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis familiaris].	142	4e-34	O
		LOC484695	PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis familiaris].	142	4e-34	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain [Bos taurus].	179	3e-45
		TPM3	PREDICTED: tropomyosin 4-like [Bos taurus].	139	5e-33	O
		TPM3	PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].	139	5e-33	O
		TPM3	tropomyosin alpha-3 chain [Bos taurus].	122	6e-28
		TPM1	tropomyosin alpha-1 chain [Bos taurus].	118	7e-27
		LOC784223	PREDICTED: tropomyosin 4 [Bos taurus].	112	5e-25	O
		LOC540799	PREDICTED: tropomyosin 4-like [Bos taurus].	112	4e-25	O
		LOC540799	PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].	112	4e-25	O
		LOC783188	PREDICTED: tropomyosin 4-like [Bos taurus].	112	5e-25	O
		LOC783188	PREDICTED: tropomyosin 4 [Bos taurus].	112	5e-25	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin alpha-4 chain [Sus scrofa].	224	4e-59	O
		TPM3	tropomyosin alpha-3 chain [Sus scrofa].	142	2e-34	O
		TPM2	tropomyosin beta chain [Sus scrofa].	127	7e-30
		LOC100620599	PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].	120	9e-28
		TPM1	tropomyosin alpha-1 chain [Sus scrofa].	118	4e-27
		LOC100620599	PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].	104	7e-23