[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-009629
Length:
955
Sequence:
[FASTA format sequence]
GATTAGTCAG GCCTCAAAAG ATGGCGTCCT CGGAGCAGGC AGAGCAACCG AGCCAGCCAA
ACTCTATTCC AGGAAGTGAA AATGTGGTAC CTCGAGAGCC ACTGATTGCC ACAGCAGTGA
AGTTTCTACA GAATTCTCGG GTCCGCCAGA GCCCACTTGC AGCCAGGAGA GCATTCCTTA
AGAAGAAAGG GCTGACAGAT GAAGAGATTG ATGTGGCTTT CCAGCAGTCA GGCTCGGCTG
CCGATGAGCC TGCGTCCTTG GGCCCAGCCA CACAGGTGGT TCCTGTCCAG CCCCCTCACC
TCATTCCGCA GCCATACAGT AAGTCACCTG CTCAAACTCC TGCTTTAACC TTGACTAGGA
TTCAGGATTC TGGCCCAGGA GCAGTGCTTC CCGTCTCCCC GACTCGGCAA GCCGGGAGAA
ACTGGGAGTA GGAGATGGCG CTTGGGTTTT TCCAAAAGAA TGTGACACAC CCGAATCCTC
TTCCAGGCCA ACTTTTAAGT ATGCAACAAA GGTGTAAGAA GCGGCACAGG ACCAGAATAA
ATGAATTTAT TGTATGGTTT CAGGTATTTT GGTGTCAAGC AAGGATCTGG AAAAGTGTTT
ATCGGTTCTG TTTCCATTTT CTTATATCCG TGCTTTTTGC ATGTTCCTGT TTCACTAATA
AGAACATAAA CATCTGATTC ATGGCTGCAT TCTTATTTGG TCCTTGAAAT AACTTACCTC
CTAATTTTAT CTTCTAGAGT TAACATTAGT AGGTGCAGAC TGGCCTTCCC CTCCCCACTC
CCCTTTTCTT CCTTCCTTCC TTCCGTGTCC TGGCTATACT GTGTACATTT ACGTAGTGGC
AGTCTGCTGG TGAATTTCAG ATTGCATGAG AAGGTCCTTT CTGAATGAAG CTTTTAATTA
TACCTGAGAA TGTGATCCAT GAAAAGTTTT TTTTGTTGTT TTTACATGAA AGCTA
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
PEX14 | peroxisomal membrane protein PEX14 [Homo sapiens]. | 184 | 8e-47 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
Pex14 | peroxisomal membrane protein PEX14 [Mus musculus]. | 181 | 1e-45 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC608947 | PREDICTED: similar to peroxisomal biogenesis factor 14 [Canis familiaris]. | 183 | 2e-46 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
PEX14 | peroxisomal biogenesis factor 14 [Bos taurus]. | 185 | 6e-47 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
PEX14 | PREDICTED: peroxisomal membrane protein PEX14 isoform 2 [Sus scrofa]. | 196 | 2e-50 | O | ||
PEX14 | PREDICTED: peroxisomal membrane protein PEX14 isoform 1 [Sus scrofa]. | 196 | 2e-50 | O | ||
PEX14 | PREDICTED: peroxisomal membrane protein PEX14 [Sus scrofa]. | 110 | 1e-24 | O |
|
|
20110601C-009629 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0124_E03.b : caattgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0012_B05.b : nnnnggagtaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0026_D09.b : nnnccgttagctgacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0025_D12.b : acxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0001_B04.b : cagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-009629 : ......GATTAGTCAGGCCTCAAAAGATGGCGTCCTCGGAGCAGGCAGAGCAACCGAGCC
---------+---------+---------+---------+---------+---------+ 54
OVRM1_0124_E03.b : xxxxxxGATTAGTCAGGCCTCAAAAGATGGCGTCCTCGGAGCAGGCAGAGCAACCGAGCC
ADR01_0012_B05.b : xxxxxxxxxxxGTCAGGCCTCAAAAGATGGCGTCCTCGGAGCAGGCAGAGCAACCGAGCC
CLNT1_0026_D09.b : xxxxxxxxxxxGTCAGGCCTCAAAAGATGGCGTCCTCGGAGCAGGCAGAGCAACCGAGCC
LVRM1_0025_D12.b : xxxxxxxxxxxxxxxxxxxxxxxxxGATGGCGTCCTCGGAGCAGGCAGAGCAACCGAGCC
OVRM1_0001_B04.b : xxxxxxxxxxxxxxxxxxxxxxxxxGATGGCGTCCTCGGAGCAGGCAGAGCAACCGAGCC
20110601C-009629 : AGCCAAACTCTATTCCAGGAAGTGAAAATGTGGTACCTCGAGAGCCACTGATTGCCACAG
---------+---------+---------+---------+---------+---------+ 114
OVRM1_0124_E03.b : AGCCAAACTCTATTCCAGGAAGTGAAAATGTGGTACCTCGAGAGCCACTGATTGCCACAG
ADR01_0012_B05.b : AGCCAAACTCTACTCCAGGAAGTGAAAATGTGGTACCTCGAGAGCCACTGATTGCCACAG
CLNT1_0026_D09.b : AGCCAAACTCTACTCCAGGAAGTGAAAATGTGGTACCTCGAGAGCCACTGATTGCCACAG
LVRM1_0025_D12.b : AGCCAAACTCTATTCCAGGAAGTGAAAATGTGGTACCTCGAGAGCCACTGATTGCCACAG
OVRM1_0001_B04.b : AGCCAAACTCTATTCCAGGAAGTGAAAATGTGGTACCTCGAGAGCCACTGATTGCCACAG
20110601C-009629 : CAGTGAAGTTTCTACAGAATTCTCGGGTCCGCCAGAGCCCACTTGCAGCCAGGAGAGCAT
---------+---------+---------+---------+---------+---------+ 174
OVRM1_0124_E03.b : CAGTGAAGTTTCTACAGAATTCTCGGGTCCGCCAGAGCCCACTTGCAGCCAGGAGAGCAT
ADR01_0012_B05.b : CAGTGAAGTTTCTACAGAATTCTCGGGTCCGCCAGAGCCCACTTGCAGCCAGGAGAGCAT
CLNT1_0026_D09.b : CAGTGAAGTTTCTACAGAATTCTCGGGTCCGCCAGAGCCCACTTGCAGCCAGGAGAGCAT
LVRM1_0025_D12.b : CAGTGAAGTTTCTACAGAATTCTCGGGTCCGCCAGAGCCCACTTGCAGCCAGGAGAGCAT
OVRM1_0001_B04.b : CAGTGAAGTTTCTACAGAATTCTCGGGTCCGCCAGAGCCCACTTGCAGCCAGGAGAGCAT
20110601C-009629 : TCCTTAAGAAGAAAGGGCTGACAGATGAAGAGATTGATGTGGCTTTCCAGCAGTCAGGCT
---------+---------+---------+---------+---------+---------+ 234
OVRM1_0124_E03.b : TCCTTAAGAAGAAAGGGCTGACAGATGAAGAGATTGATGTGGCTTTCCAGCAGTCAGGCT
ADR01_0012_B05.b : TCCTTAAGAAGAAAGGGCTGACAGATGAAGAGATTGATGTAGCTTTCCAGCAGTCAGGCT
CLNT1_0026_D09.b : TCCTTAAGAAGAAAGGGCTGACAGATGAAGAGATTGATGTGGCTTTCCAGCAGTCAGGCT
LVRM1_0025_D12.b : TCCTTAAGAAGAAAGGGCTGACAGATGAAGAGATTGATGTGGCTTTCCAGCAGTCAGGCT
OVRM1_0001_B04.b : TCCTTAAGAAGAAAGGGCTGACAGATGAAGAGATTGATGTGGCTTTCCAGCAGTCAGGCT
20110601C-009629 : CGGCTGCCGATGAGCCTGCGTCCTTGGGCCCAGCCACACAGGTGGTTCCTGTCCAGCCCC
---------+---------+---------+---------+---------+---------+ 294
OVRM1_0124_E03.b : CGGCTGCCGATGAGCCTGCGTCCTTGGGCCCAGCCACACAGGTGGTTCCTGTCCAGCCCC
ADR01_0012_B05.b : CGGCTGCCGATGAGCCTGCGTCCTTGGGCCCAGCCACACAGGTGGTTCCTGTCCAGCCCC
CLNT1_0026_D09.b : CGGCTGCCGATGAGCCTGCGTCCTTGGGCCCAGTCACACAGGTGGTTCCTGTCCAGCCCC
LVRM1_0025_D12.b : CGGCTGCCGATGAGCCTGCGTCCTTGGGCCCAGCCACACAGGTGGTTCCTGTCCAGCCCC
OVRM1_0001_B04.b : CGGCTGCCGATGAGCCTGCGTCCTTGGGCCCAGCCACACAGGTGGTTCCTGTCCAGCCCC
20110601C-009629 : CTCACCTCATTCCGCAGCCATACAGTAAGTCACCTGCTCAAACTCCTGCTTTAACCTTGA
---------+---------+---------+---------+---------+---------+ 354
OVRM1_0124_E03.b : CTCACCTCATTCCGCAGCCATACAGTAAGTCACCTGCTCAAACTCCTGCTTTAACCTTGA
ADR01_0012_B05.b : CTCACCTCATTCCGCAGCCATACAGTAAGTCACCTGCTCAAACTCCTGCTTTAACCTTGA
CLNT1_0026_D09.b : CTCACCTCATTCCGCAGCCATACAGTAAGTCACCTGCTCAAACTCCTGCTTTAACCTTGA
LVRM1_0025_D12.b : CTCACCTCATTCCGCAGCCATACAGTAAGTCACCTGCTCAAACTCCTGCTTTAACCTTGA
OVRM1_0001_B04.b : CTCACCTCATTCCGCAGCCATACAGTAAGTCACCTGCTCAAACTCCTGCTTTAACCTTGA
20110601C-009629 : CTAGGATTCAGGATTCTGGCCCAGGAGCAGTGCTTCCCGTCTCCCCGACTCGGCAAGCCG
---------+---------+---------+---------+---------+---------+ 414
OVRM1_0124_E03.b : CTAGGATTCAGGATTCTGGCCCAGGAGCAGTGCTTCCCGTCTCCCCGACTCGGCAAGCCG
ADR01_0012_B05.b : CTAGGATTCAGGATTCTGGCCCAGGAGCAGTGCTTCCCGTCTCCCCGACTCGGCAAGCTG
CLNT1_0026_D09.b : CTAGGATTCAGGATTCTGGCCCAGGAGCAGTGCTTCCCGTCTCCCCGACTCGGCAAGCCG
LVRM1_0025_D12.b : CTAGGATTCAGGATTCTGGCCCAGGAGCAGTGCTTCCCGTCTCCCCGACTCGGCAAGCCG
OVRM1_0001_B04.b : CTAGGATTCAGGATTCTGGCCCAGGAGCAGTGCTTCCCGTCTCCCCGACTCGGCAAGCCG
20110601C-009629 : GGAGAAACTGGGAGTAGGAGATGGCGCTTGGGTTTTTCCAAAAGAATGTGACACACCCGA
---------+---------+---------+---------+---------+---------+ 474
OVRM1_0124_E03.b : GGAGAAACTGGGAGTAGGAGATGGCGCTTGGGTTTTTCCAAAAGAATGTGACACACCCGA
ADR01_0012_B05.b : GGAGAAACTGGGAGTAGGAGATGGCGCTTGGGTTTTTCCAAAAGAATGTGACACACCCGA
CLNT1_0026_D09.b : GGAGAAACTGGGAGTAGGAGATGGCGCTTGGGTTTTTCCAAAAGAATGTGACACACCCGA
LVRM1_0025_D12.b : GGAGAAACTGGGAGTAGGAGATGGCGCTTGGGTTTTTCCAAAAGAATGTGACACACCCGA
OVRM1_0001_B04.b : GGAGAAACTGGGAGTAGGAGATGGCGCTTGGGTTTTTCCAAAAGAATGTGACACACCCGA
20110601C-009629 : ATCCTCTTCCAGGCCAACTTTTAAGTATGCAACAAAGGTGTAAGAAGCGGCACAGGACCA
---------+---------+---------+---------+---------+---------+ 534
OVRM1_0124_E03.b : ATCCTCTTCCAGGCCAACTTTTAAGTATGCAACAAAGGTGTAAGAAGCGGCACAGGACCA
ADR01_0012_B05.b : ATCCTCTTCCAGGCCAACTTTTAAGTATGCAACAAAGGTGTAAGAAGCGGCACAGGACCA
CLNT1_0026_D09.b : ATCCTCTTCCAGGCCAACTTTTAAGTATGCAACAAAGGTGTAAGAAGCGGCACAGGACCA
LVRM1_0025_D12.b : ATCCTCTTCCAGGCCAACTTTTAAGTATGCAACAAAGGTGTAAGAAGCGGCACAGGACCA
OVRM1_0001_B04.b : ATCCTCTTCCAGGCCAACTTTTAAGTATGCAACAAAGGTGTAAGAAGCGGCACAGGACCA
20110601C-009629 : GAATAAATGAATTTATTGTATGGTTTCAGGTATTTTGGTGTCAAGCAAGGATCTGGAAAA
---------+---------+---------+---------+---------+---------+ 594
OVRM1_0124_E03.b : GAATAAATGAATTTATTGTATGGTTTCAGGTATTTTGGTGTCAAGCAAGGATCTGGAAAA
ADR01_0012_B05.b : GAATAAATGAATTTATTGTATGGTTTCAGGTATTTTGGTGTCAAGCAAGGATCTGGAAAA
CLNT1_0026_D09.b : GAATAAATGAATTTATTGTATGGTTTCAGGTATTTTGGTGTCAAGCAAGGATCTGGAAAA
LVRM1_0025_D12.b : GAATAAATGAATTTATTGTATGGTTTCAGGTATTTTGGTGTNCAGCAAGGATCTGGAAAA
OVRM1_0001_B04.b : GAATAAATGAATTTATTGTATGGTTTCAGGTATTTTGGTGTCAAGCAAGGATCTGGAAAA
20110601C-009629 : GTGTTTATCGGTTCTGTTTCCATTTTCTTATATCCGTGCTTTTTGCATGTTCCTGTTTCA
---------+---------+---------+---------+---------+---------+ 654
OVRM1_0124_E03.b : GTGTTTATCGGTTCTGTTTCCATTTTCTTATATCCGTGCTTTTTGCATGTTCCTGTTTCA
ADR01_0012_B05.b : GTGTTTATCGGTTCTGTTTCCATTTTCTTATATCCGTGCTTTTTGCATGTTCCTGTTTCA
CLNT1_0026_D09.b : GTGTTTATCGGTTCTGTTTCCATTTTCTTATATCCGTGCTTTTTGCATGTTCCTGTTTCA
LVRM1_0025_D12.b : GTGTTTATCGGTTCTGTTTCCATTTTCTTATATCCGTGCTTTTTGCATGTTCCTGTTTCA
OVRM1_0001_B04.b : GTGTTTATCGGTTCTGTTTCCATTTTCTTATATCCGTGCTTTTTGCATGTTCCTGTTTCA
20110601C-009629 : CTAATAAGAACATAAACATCTGATTCATGGCTGCATTCTTATTTGGTCCTTGAAATAACT
---------+---------+---------+---------+---------+---------+ 714
OVRM1_0124_E03.b : CTAATAAGAACATAAACATCTGATTCATGGCTGCATTCTTATTTGGTCCTT*GAAATACT
ADR01_0012_B05.b : CTAATAAGAACATAAACATCTGATTCATGGCTGCATTCTTATTTGGTCCTTTGAATAACT
CLNT1_0026_D09.b : CTAATAAGAACATAAACATCTGATTCATGGCTGCATTCTTATTTGGTCCTTGAAATAACT
LVRM1_0025_D12.b : CTAATAAGAACATACACATCTGATTCATGGCTGCATTCTTATTTGGTCCTTGAAATAACT
OVRM1_0001_B04.b : CTAATAAGAACATAAACATCTGATTCATGGCTGCATTCTTATTTGGTCCTTGAAATTACT
20110601C-009629 : TACCTCCTAATTTTATCTTCTAGAGTTAACATTAGTAGGTGCAGACTGGCCTTCCCCTCC
---------+---------+---------+---------+---------+---------+ 774
OVRM1_0124_E03.b : TACCTCCTAATT*TATCTTCTAGAGTTAACATTAGTAGGTGCAGACTGGCCttcccttcc
ADR01_0012_B05.b : TACCTCCTAATT*TATCTTCTAGAGTTAACATTAGTAGGTGCAGACTGGCCTTCCCCTCC
CLNT1_0026_D09.b : TACCTCCTAATTTTATCTTCTAGAGTTAACATTAGTAGGTGCAGACTGGCCTTCCCCTCC
LVRM1_0025_D12.b : TACCTCCTAATTTTATCTTCTAGAGTTAACATTAGTAGGTGCAGACTGGCC
OVRM1_0001_B04.b : TACCTCCTAATTTTATCTTCTAGAGTTGACTTTAGTAGGggagactggc
20110601C-009629 : CCACTCCCCTTTTCTTCCTTCCTTCCTTCCGTGTCCTGGCTATACTGTGTACATTTACGT
---------+---------+---------+---------+---------+---------+ 834
OVRM1_0124_E03.b :
ADR01_0012_B05.b : CCACTCCCCTCTTCTTCCTTCCNTTCCTTCGTGTCCTGGCTATACTGTGTACATTTACGT
CLNT1_0026_D09.b : CCACTCCCCTTTTCTTCCTTCNTTCCTTCCGTGTCCTGGCTATACTGTGTACATTTACGT
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :
20110601C-009629 : AGTGGCAGTCTGCTGGTGAATTTCAGATTGCATGAGAAGGTCCTTTCTGAATGAAGCTTT
---------+---------+---------+---------+---------+---------+ 894
OVRM1_0124_E03.b :
ADR01_0012_B05.b : AGTGGCAGTCTGCTGGTGAAATTC*GAATGCATGAGAAGGTCCTTTCTGAATGAAGCTTT
CLNT1_0026_D09.b : AGTGGCAGTCTGCTGGTGAATTTCAGATTGCATGAGAAGGTCCTTTCTGAATGAAGCTTT
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :
20110601C-009629 : TAATTATACCTGAGAATGTGATCCATGAAAAGTTTTTTTTGTTGTTTTTACATGAAAGCT
---------+---------+---------+---------+---------+---------+ 954
OVRM1_0124_E03.b :
ADR01_0012_B05.b : TAATTATACCTGAAAATGTGATCCATGAAAAGGTTTTTTTGTTGTTTTTACATGAAgcta
CLNT1_0026_D09.b : TAATTATACCTGAGAATGTGATTCATGAGAAGTTTTTTTTGGTGTTTTTACATGAAAGCT
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :
20110601C-009629 : A...........................................................
---------+---------+---------+---------+---------+---------+ 955
OVRM1_0124_E03.b :
ADR01_0012_B05.b : ctttggggataaagttcttttaactaataataacttatgcttccacataaaaccgaaacc
CLNT1_0026_D09.b : Actttgggaataagggttcttaaactagtaataacatatgctccccaaatatagcgaaac
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :
20110601C-009629 : ............................................................
---------+---------+---------+---------+---------+---------+ 955
OVRM1_0124_E03.b :
ADR01_0012_B05.b : cgtctttaagtcccttagaaattccaaagggtaaattgattcaaagcaataaatcatgga
CLNT1_0026_D09.b : ccgtctttaattccctatgaaaaatccgaagggtttaaatgattccaaacattaaatcag
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :
20110601C-009629 : ............................................................
---------+---------+---------+---------+---------+---------+ 955
OVRM1_0124_E03.b :
ADR01_0012_B05.b : agatgctgtttgggtgttaacatacattcagcctggggattacgtttggctcgtgtaaga
CLNT1_0026_D09.b : ggaaaatgctgttttggggttaaataaaattcacctggggagtacggttgggcccgtggt
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :
20110601C-009629 : ............................................................
---------+---------+---------+---------+---------+---------+ 955
OVRM1_0124_E03.b :
ADR01_0012_B05.b : accgaatatattcgaggacccggttgacctgcctgccatgggaaaattggtttccaaact
CLNT1_0026_D09.b : agaacccaataattcttaggaaccggtttaaccgggccttccagggtaaaaacgggttcc
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :
20110601C-009629 : ............................................................
---------+---------+---------+---------+---------+---------+ 955
OVRM1_0124_E03.b :
ADR01_0012_B05.b : gggaaagccaaacaacccaattgggggccggtggggaaggaatttatcccttacccaccg
CLNT1_0026_D09.b : aaaactgttattttcaaacccctgtattggggccgggttggggaagggacttatccttta
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :
20110601C-009629 : ............................................................
---------+---------+---------+---------+---------+---------+ 955
OVRM1_0124_E03.b :
ADR01_0012_B05.b : gaatccgggaggtggccaaaaaaaaaacaaaaagggggggggttaaggctataatctttt
CLNT1_0026_D09.b : ccccccggaatcctggttgggggccaaaaaaaaaaaaaaaaagaggggggggtctaagtc
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :
20110601C-009629 : ............................................................
---------+---------+---------+---------+---------+---------+ 955
OVRM1_0124_E03.b :
ADR01_0012_B05.b : gtccagttttttcaaaagggtttattaaaaaaaatttcccgggggtgccgccctccgggg
CLNT1_0026_D09.b : taattttttggtccaaatttttaaaagg
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :
20110601C-009629 : ............................................................
---------+---------+---------+---------+---------+---------+ 955
OVRM1_0124_E03.b :
ADR01_0012_B05.b : ataaacacgaattattact
CLNT1_0026_D09.b :
LVRM1_0025_D12.b :
OVRM1_0001_B04.b :