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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
ADR01_0072_B01
Library: ADR01 (Adrenal gland)
Individual: LWD2, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,410)
[FASTA format sequence]
TTGTACCTGT CTTGAGAGGA TAATTTAATA TACTCTTGAA ACTCTTAAAA AAAAATTCCC
TGGAAAGTAA AAGTATCCAC TTTAAGGGAT TAGAGGTAAT TTAACTCCCT ATTTTTTTTT
TTCTGTATTG TAGAAAAATG ATTGTTTGAA TAAATGTCAC TGTTTTGTGT ACATTCGTTA
AACTGTATGA GATCAGTAAA CCACTTTCTG AGTTGTAATA GTAGCATAAA AATATGGGCT
ACGTTTGCGT GACTTTTTTT TTTTTTTTTT TTTCTGCTGC AAATCGTGGC ATATGGAGGT
TCCCAGGCTA GTGGTTGAAT TGGAGCTACA GCTGCCATTG TACACCACAG CCACAGCAGT
GTGGGATCTG AGCTACATCT GTAACCTACA CCACAGCTCA TGGCAAAGCT GGATCCTTAA
CCCACTGAGT GAGACCAGGG ATCGAACCCA CATCCTTGTG GATCCTAGTC GGGTTTGTTA
GCCACTGAAG CCCATGTAGG GAACTCCTTT TTAAAAGGTA TTGTTTATAT CTCTACCTCT
TTCTTTTCCG CCCGCTCCCC CCTCCCCCCG AGCGCCGCTC CGGCTGCACC GCGCTCGCTC
TGAGCTCCCG GTTCCTGCTA AGCTAGCGCC GCCGTCGTCT CCCTCCAGCC GCCATCATGA
TCATCTACCG GGACCTCATC AGCCATGATG AGATGTTTTC CGACATCTAC AAGATCCGGG
AGATCGCGGA CGGGCTGTGT CTGGAGGTGG AGGGGAAGAT GGTCAGTAGG ACAGAGGGTA
ACATTGATGA CTCGCTCATT GGTGGAAATG CCTCCGCTGA AGGGCCCGAG GGCGAAGGTA
CCGAAAGCAC AGTAATCACT GGTGTCGATA TTGTCATGAA CCATCACCTG CAGGAAACCA
GCTTCACAAA GGAAGCCTAC AAGAAGTACA TCAAAGATTA TATGAAGTCA ATCAAAGGGA
AACTCGAAGA ACAGAGACCA GAAAGAGTAA AACCTTTTAT GACAGGAGCT GCAGAACAAA
TCAAGCACAT CCTTGCTAAT TTCAAAAACT ATCAGTTCTT TATTGGTGAA AACATGAATC
CAGACGGCAT GGTTGCTCTG CTGGACTACC GTGAGGATGG TGTGACTCCA TATATGATTT
TCTTTAAGGA TGGCTTAGAA ATGGAAAAAT GTTAACAAAT TTGGCTGTTG GGATCGGATC
TATCACCCGT TGTCATAACT GGCTGGCCAC TGCTTTCCAT CCACAAAACA CCAGGACTTA
GACAAGTGGG ACTGATGGCA TCTTGAGCTC GTTATTTTGA CATTGATTTT TCTTTGGAGC
GGAGGCATTG TTTTTGAGGA AAAAAACATG TCATGTAGGT TGTCTAAAAA TAAAATGCAT
TTAAACTCAA AAAAAAAAAA AAAAAAAAAA
Deduced amino acid sequence: (length: 172) [FASTA format sequence]
MIIYRDLISH DEMFSDIYKI REIADGLCLE VEGKMVSRTE GNIDDSLIGG NASAEGPEGE
GTESTVITGV DIVMNHHLQE TSFTKEAYKK YIKDYMKSIK GKLEEQRPER VKPFMTGAAE
QIKHILANFK NYQFFIGENM NPDGMVALLD YREDGVTPYM IFFKDGLEME KC
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPT1 | translationally-controlled tumor protein [Homo sapiens]. | 350 | 2e-96 | |
|
| FLJ44635 | TPT1-like protein [Homo sapiens]. | 235 | 7e-62 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpt1 | translationally-controlled tumor protein [Mus musculus]. | 340 | 2e-93 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC476924 | PREDICTED: similar to Translationally controlled tumor protein (TCTP) (p23) (Histamine-releasing factor) (HRF) isoform 7 [Canis familiaris]. | 350 | 2e-96 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPT1 | translationally-controlled tumor protein [Bos taurus]. | 350 | 2e-96 | |
|
| LOC100337367 | PREDICTED: tumor protein, translationally-controlled 1-like [Bos taurus]. | 350 | 2e-96 | |
|
| TPT1 | PREDICTED: tumor protein, translationally-controlled 1-like [Bos taurus]. | 342 | 6e-94 | |
|
| LOC100297647 | PREDICTED: tumor protein, translationally-controlled 1-like [Bos taurus]. | 222 | 5e-58 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TCTP | translationally-controlled tumor protein [Sus scrofa]. | 350 | 1e-96 | |
|
| LOC100154612 | PREDICTED: cytosolic purine 5'-nucleotidase [Sus scrofa]. | 269 | 3e-72 | |
|
| LOC100626972 | PREDICTED: hypothetical protein LOC100626972 [Sus scrofa]. | 125 | 4e-29 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-05724 | 4.1 | TTGAGCTCGTTATTTTGACATTGATTTTTCTTTGGAGCGGAGGCATTGTTTTTGAGGAAA |
Assembly member: TOP