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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
AMP01_0025_C08
Library: AMP01 (Alveolar macrophages)
Individual: LWD7, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,859)
[FASTA format sequence]
AGGCAGAAGA AGACAGACAG GCCAACAGGT TCAGACAGCC TGCTCGCCGC TCCACGCCCC
CCACTGCTCT CCTGCCCCAG CGCCGAGATG GATACCCCTG TTAGGGACCT AGACAAGTTC
ATCGAAGACC ACCTCCTGCC AAACACATGT TTCCGAACGC AGGTCAAGGA AGCCATCGAC
ATCGTCTGCG GTTTCCTGAA GGAGAGGTGC TTCCAGGGGA CCGCCGACCC TGTTCGCGTC
TCCAAAGTTG TGAAGGGTGG CTCCTCGGGC AAAGGCACGA CCCTCAGGGG CCGATCAGAT
GCTGACCTCG TCGTCTTCCT CACCAAGCTC ACAAGTTTTG AGGATCAGCT TCAGCTCCGA
GAAGAATTCA TCCAGGAAAT TCGGAGACAG CTGGAAGCCT GTCAAAAAGA ACAAAAGTTT
AAAGTGACGT TTGAGGTCCA GACTCCACGA CAGGAGAACC CCCGTGCCCT CAGCTTCGTG
CTCAGCTCCC CCCAGCTCCA GCAGGAGGTG GAGTTTGATG TCCTGCCCGC CTTTGATGCC
CTGGGTCAGT GGACCCCGGG CTACAAACCC AACCCGGAAA TCTACGTCCA GCTTATCAAA
GAGTGCAAGT CCCTAGGGAA AGAGGGCGAG TTTTCCACCT GCTTCACGGA GCTGCAGCGA
GACTTCCCGA GGAACCGACC AACCAAGCTG AAGAGCCTCA TCCGCCTTGT CAAGCACTGG
TACCAGACGT GTAAGAAGCC TCATGGAAAT AAACTGCCCC CACAGTATGC CCTGGAGCTC
CTGACAGTCT ATGCATGGGA GCAAGGAAGC GGGAAAACAG ATTTTAGCAC AGCTCAGGGA
TTTCAGACTG TTTTGGAATT AGTCCTAAAG CATAAGAAGC TTTGCATCTT CTGGGAAGCA
TATTATAACT TTAAAAACCC TGTCGTTGGA CGATATCTGA CTGAGCAACT CAAGAAACCC
AGGCCTGTGA TTCTGGACCC GGCTGACCCT ACAGGCAACG TTGGTGGTGG AGACACATAC
AGCTGGCAGC AGCTGGTAGA AGGGGCACTA ATCTGGCTGA ATTATCCGTG CTTTTTGAAA
TGGAACAGGT CACCGGTGGG ATCCTGGAAG GTGTCGCCTG AGGCCAAGGC CCCTCCACAG
GAGGAAGATA TCTAGACGTG CACCAGAGCA TCTTAAGAGT GAGGTCCCTG GAGCCGCCTG
GACCAGCCCC CTCATCCCTA GGGTCGGGGC CCGGAGCCTT CATCCCTAGA GGGCCATGAG
TTGGTGTCAG ACCTGGCACC AGAATCCAGG TCTTTGACCC CCTTGCTGCT ATTCCGTGCT
CTGTCTCCTT TCACAGAGAG TATTTCCCCA TAGGCCTCTC CCCACCAGAG AGGAGAGGTC
TCTAAGCCAC AACAGGAAAG ACTTAGACAA GAGTGGAACC CCAGCCTGGA CTTTCTTCTG
TATACCTGGT GGAGAGTTAT GGTCCAAAGT ATCGTCATTA CAATAAAAAT AGGAGTTCCT
CTTGTGGTTC GGTGGCAATG AATCTGACTA GTATCCATGA GGACCAGGGT TCACTCCCTG
GCCTCACTCA GTGGGTTAAG GATCCAGCGT TGCCATGAGC TGTGGTGTAG GTTGCAGACA
CGGCTAGGAT CTGGCATGGC TGTGGCTGTG GCTGTGGTGT AGGCCGGCAG CTGCAGTTCC
AATTTGACCT CTAGCCTGGG AACTTACATA TGCCACATGT GGGGCCCTAA AAAGACAAAA
AATAATAATA AAATATAACA TAATACAATA TAATATAATA AAAATAGTAT CAAATACCAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAC CAAAAAAAAA AAAAAAAAAA AAAAAAAAA
Deduced amino acid sequence: (length: 355) [FASTA format sequence]
MDTPVRDLDK FIEDHLLPNT CFRTQVKEAI DIVCGFLKER CFQGTADPVR VSKVVKGGSS
GKGTTLRGRS DADLVVFLTK LTSFEDQLQL REEFIQEIRR QLEACQKEQK FKVTFEVQTP
RQENPRALSF VLSSPQLQQE VEFDVLPAFD ALGQWTPGYK PNPEIYVQLI KECKSLGKEG
EFSTCFTELQ RDFPRNRPTK LKSLIRLVKH WYQTCKKPHG NKLPPQYALE LLTVYAWEQG
SGKTDFSTAQ GFQTVLELVL KHKKLCIFWE AYYNFKNPVV GRYLTEQLKK PRPVILDPAD
PTGNVGGGDT YSWQQLVEGA LIWLNYPCFL KWNRSPVGSW KVSPEAKAPP QEEDI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | OAS1 | 2'-5'-oligoadenylate synthase 1 isoform 1 [Homo sapiens]. | 499 | e-141 | O |
|
| OAS3 | 2'-5'-oligoadenylate synthase 3 [Homo sapiens]. | 338 | 1e-92 | |
|
| OAS2 | 2'-5'-oligoadenylate synthase 2 isoform 1 [Homo sapiens]. | 333 | 4e-91 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Oas1g | 2'-5' oligoadenylate synthetase 1G [Mus musculus]. | 430 | e-120 | O |
|
| Oas1a | 2'-5'-oligoadenylate synthase 1A [Mus musculus]. | 427 | e-119 | |
|
| Oas1f | 2'-5'oligoadenylate synthetase 1F [Mus musculus]. | 360 | 2e-99 | |
|
| Oas1b | 2'-5'-oligoadenylate synthase 1B [Mus musculus]. | 344 | 2e-94 | |
|
| Oas1h | 2'-5' oligoadenylate synthetase 1H isoform 1 [Mus musculus]. | 318 | 1e-86 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| OAS1 | 2'-5'-oligoadenylate synthase 1 [Canis lupus familiaris]. | 484 | e-136 | O |
|
| OAS2 | 2'-5'-oligoadenylate synthase 2 [Canis lupus familiaris]. | 330 | 4e-90 | |
|
| OAS3 | 2'-5'-oligoadenylate synthase 3 [Canis lupus familiaris]. | 321 | 1e-87 | |
|
| OASL | 59 kDa 2'-5'-oligoadenylate synthase-like protein [Canis lupus familiaris]. | 241 | 2e-63 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| OAS1 | 2',5'-oligoadenylate synthetase 1 [Bos taurus]. | 493 | e-139 | O |
|
| OAS1 | 2',5'-oligoadenylate synthetase 1, 40/46kDa [Bos taurus]. | 456 | e-128 | O |
|
| OAS1 | 2',5'-oligoadenylate synthetase 1 [Bos taurus]. | 429 | e-120 | O |
|
| OAS2 | 2'-5'-oligoadenylate synthase 2 [Bos taurus]. | 311 | 1e-84 | |
|
| OASL | 59 kDa 2'-5'-oligoadenylate synthase-like protein [Bos taurus]. | 202 | 1e-51 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| OAS1 | 2'-5'-oligoadenylate synthase 1 [Sus scrofa]. | 597 | e-171 | O |
|
| OAS2 | 2'-5'-oligoadenylate synthase 2 [Sus scrofa]. | 327 | 1e-89 | |
|
| OASL | 59 kDa 2'-5'-oligoadenylate synthase-like protein [Sus scrofa]. | 196 | 3e-50 | O |
|
| TPCN1 | PREDICTED: two pore calcium channel protein 1 [Sus scrofa]. | 141 | 1e-33 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-01142 | 4.1 | GGACTTTCTTCTGTATACCTGGTGGAGAGTTATGGTCCAAAGTATCGTCATTACAATAAA |
Assembly member: TOP