Clone Information

[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]

Clone Name: BFLT1_0085_G08

Library: BFLT1 (Brain (frontal lobe))
Individual: D2-14C, Unknown

Nucleotide sequence: (length: 3,148) [FASTA format sequence] GTGAGCAAAA GTTTCAGGTG GCGAGCCCCG CCGCCGCGCT GCTGTTCGGT CAGTTTCCTC GGCAGCGGTA GGAGAGAGCA CCCGGGGCAG CGCGAGCGCG GGGCCACCGT AGACAGCGGC AGCGACACCG GCAGAGCAAG GGCGCGGCGG ATCCCACGCG AACAGCAGCG CACTCGGTGC CCCGCGCAGG GTCGCGATGC TGCCCGGTTT GGCACTGGTC CTGCTGGCCG CCTGGACGGC TCGGGCGCTG GAGGTGCCCA CTGATGGCAA TGCCGGCCTG CTTGCAGAAC CCCAGGTTGC CATGTTCTGT GGCAAACTCA ACATGCACAT GAATGTGCAG AATGGGAAGT GGGAGTCAGA TCCGTCGGGG ACCAAAACCT GCATTGGCAC CAAGGAAGGC ATCTTGCAGT ACTGCCAAGA AGTCTACCCT GAACTGCAGA TCACCAATGT GGTAGAAGCC AACCAACCAG TGACCATCCA GAACTGGTGC AAGAGGAGCC GGAAGCAGTG CAAGACCCAC ACTCACATTG TGATTCCGTA CCGCTGCTTA GTTGGCGAGT TTGTAAGCGA TGCCCTCCTT GTTCCGGACA AGTGCAAGTT CTTACACCAG GAGAGGATGG ATGTTTGCGA AACCCACCTT CACTGGCACA CTGTGGCCAA AGAGACCTGT AGTGAGAAGA GTACGAACTT GCATGACTAT GGCATGTTGC TGCCCTGTGG AATTGACAAG TTCCGAGGGG TGGAGTTTGT GTGTTGCCCA CTGGCCGAGG AAAGTGACAA TATCGACTCA GCAGATGCAG AAGAGGATGA CTCGGACGTC TGGTGGGGTG GAGCAGATAC AGACTATGCA GATGGCAGTG AAGACAAAGT CGTGGAGGTC GCAGAGGAGG AGGAAGTGGC TGATGTCGAG GAAGAAGAAG CTGAGGATGA TGAGGATGAT GAGGATGGTG ATGAGGTAGA AGAAGAGGCT GAGGAACCCT ATGAAGAGGC CACGGAGAGA ACCACCAGCA TCGCCACAAC CACCACCACC ACCACGGAGT CTGTGGAAGA GGTAGTCCGA GAGGTGTGCT CTGAACAAGC CGAGACGGGG CCGTGCCGAG CAATGATCTC CCGCTGGTAC TTTGATGTGA CTGAAGGGAA GTGCGCCCCG TTCTTTTACG GCGGATGTGG CGGCAACCGA AACAACTTTG ACACAGAGGA ATACTGCATG GCCGTGTGTG GCAGCGTCAT TCCTACAACA GCAGCCAGCA CCCCGGATGC CGTTGACAAG TATCTTGAGA CACCTGGAGA TGAGAACGAA CATGCGCATT TCCAGAAAGC CAAAGAGAGG CTGGAGGCCA AGCACCGCGA GAGAATGTCC CAGGTCATGA GAGAGTGGGA AGAGGCAGAA CGTCAAGCAA AGAACTTGCC TAAAGCTGAT AAGAAAGCAG TGATCCAGCA TTTCCAGGAG AAAGTGGAGT CTCTGGAGCA GGAAGCAGCC AACGAGAGGC AGCAGTTGGT GGAGACGCAC ATGGCCAGAG TGGAGGCCAT GCTTAACGAC CGCCGGCGCC TGGCCCTGGA GAATTACATC ACGGCTCTTC AGGCTGTTCC TCCTCGGCCT CGTCATGTGT TCAACATGCT CAAGAAGTAT GTCCGTGCTG AACAGAAAGA CAGACAGCAC ACCCTAAAGC ATTTTGAACA CGTTCGCATG GTAGATCCAA AGAAAGCTGC TCAGATCCGA TCCCAGGTTA TGACACACCT CCGTGTGATT TACGAGCGCA TGAACCAGTC TCTCTCCCTG CTCTACAACG TTCCTGCTGT GGCCGAGGAA ATTCAGGATG AAGTTGATGA GCTGCTGCAG AAAGAGCAAA ACTACTCGGA TGATGTCTTG GCCAACATGA TCAGCGAACC GAGGATCAGT TATGGAAACG ATGCTCTCAT GCCGTCTCTG ACTGAAACCA AAACCACCGT GGAGCTTCTT CCTGTGAATG GAGAGTTCAG CCTGGATGAT CTCCAGCCCT GGCATCCTTT TGGGGTAGAC TCTGTGCCTG CCAACACAGA AAATGAAGTC GAGCCTGTTG ACGCCCGCCC TGCAGCCGAC CGAGGACTGA CCACTCGACC AGGTTCCGGG TTGACCAACA TCAAGACGGA AGAGATCTCT GAAGTGAAGA TGGATGCGGA GTTCCGACAC GATTCGGGCT ATGAGGTTCA TCACCAAAAA CTGGTGTTCT TCGCAGAAGA TGTGGGTTCA AACAAAGGTG CCATCATTGG ACTCATGGTG GGTGGTGTTG TCATAGCAAC CGTGATTGTC ATCACCTTAG TGATGCTGAA GAAGAAACAG TACACATCTA TCCATCACGG TGTGGTGGAG GTTGACGCAG CTGTGACCCC GGAGGAGCGC CACCTCTCCA AGATGCAGCA GAATGGCTAT GAAAACCCAA CTTACAAGTT CTTTGAGCAG ATGCAGAACT AGACCGCCGC CACAGCAGCC TCTGAAGTTG GACAGCAAAA CCATTGCTTC ACTACCCATT GGTGTTCATT TATAGAATAA TGGGGAAAGA CACAAACCCT TCTGTTTTAT TATTTACTCA TGATCGCCTT TCAGCAGCTG TGCTGTAACA CAAGTAGATG CCTGAACTTG AATTAATATT ACGAATCAGT AATGTATTCT CTCTCTTTAC ATTTCCGGTC TCTACACTAC ATTATTAATG GGTTTTGTGT ACTGTAAAGA ATGAAGCTGT ATCAAACTAG TGCATGAATA GATTCCCTCC TGATTATTTA TCATGTAGCC CCTTAGCCAG TTGTATATTA TTCTTGTGGT TTTGTGATCC AATTAAGTCC TACTTTGAAA TATGCTTTAA GAATCGATGG GGGATGCTTC ATGTGAACGT GGGAGTTTAG CTGCTTCTCT TGCCTAAGTA TTCTTTTCCT GATCACTATG CATTTTAAAG GTAAACATTT TTATGTATTC CAAATGAGTT AGAGAAGTTT TTTCCACGAT TGCATTTGAC TGTACAGATT GCTGCTTCTG CTATATTTGT GATATAGGAA TTATGAGGAT ACACGTTTAT TTCTTTGTGC CTGTTTTATG TGCACACATT AGGCATTGAG AATTAAAACT TCTTTTGTCC GTGTACCTTC GGATCTTTGA TAAAAAAAAA AAAAAAAA

Deduced amino acid sequence: (length: 751) [FASTA format sequence] MLPGLALVLL AAWTARALEV PTDGNAGLLA EPQVAMFCGK LNMHMNVQNG KWESDPSGTK TCIGTKEGIL QYCQEVYPEL QITNVVEANQ PVTIQNWCKR SRKQCKTHTH IVIPYRCLVG EFVSDALLVP DKCKFLHQER MDVCETHLHW HTVAKETCSE KSTNLHDYGM LLPCGIDKFR GVEFVCCPLA EESDNIDSAD AEEDDSDVWW GGADTDYADG SEDKVVEVAE EEEVADVEEE EAEDDEDDED GDEVEEEAEE PYEEATERTT SIATTTTTTT ESVEEVVREV CSEQAETGPC RAMISRWYFD VTEGKCAPFF YGGCGGNRNN FDTEEYCMAV CGSVIPTTAA STPDAVDKYL ETPGDENEHA HFQKAKERLE AKHRERMSQV MREWEEAERQ AKNLPKADKK AVIQHFQEKV ESLEQEAANE RQQLVETHMA RVEAMLNDRR RLALENYITA LQAVPPRPRH VFNMLKKYVR AEQKDRQHTL KHFEHVRMVD PKKAAQIRSQ VMTHLRVIYE RMNQSLSLLY NVPAVAEEIQ DEVDELLQKE QNYSDDVLAN MISEPRISYG NDALMPSLTE TKTTVELLPV NGEFSLDDLQ PWHPFGVDSV PANTENEVEP VDARPAADRG LTTRPGSGLT NIKTEEISEV KMDAEFRHDS GYEVHHQKLV FFAEDVGSNK GAIIGLMVGG VVIATVIVIT LVMLKKKQYT SIHHGVVEVD AAVTPEERHL SKMQQNGYEN PTYKFFEQMQ N

SNP mapping information

SNP ID Rel. Chr. Location (cM)

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
APP amyloid beta A4 protein isoform b precursor [Homo sapiens]. 1306 0.0

		Locus	Definition	Score	E value	FL
		APP	amyloid beta A4 protein isoform b precursor [Homo sapiens].	1306	0.0

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
App amyloid beta A4 protein isoform 3 precursor [Mus musculus]. 1303 0.0

Spint2 kunitz-type protease inhibitor 2 isoform a [Mus musculus]. 68.6 3e-11

		Locus	Definition	Score	E value	FL
		App	amyloid beta A4 protein isoform 3 precursor [Mus musculus].	1303	0.0
		Spint2	kunitz-type protease inhibitor 2 isoform a [Mus musculus].	68.6	3e-11

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
APP amyloid beta A4 protein [Canis lupus familiaris]. 1292 0.0

LOC479393 PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid protein homolog) (APPH) (CDEI-box binding protein) (CDEBP) isoform 26 [Canis familiaris]. 448 e-125

		Locus	Definition	Score	E value	FL
		APP	amyloid beta A4 protein [Canis lupus familiaris].	1292	0.0
		LOC479393	PREDICTED: similar to Amyloid-like protein 2 precursor (Amyloid protein homolog) (APPH) (CDEI-box binding protein) (CDEBP) isoform 26 [Canis familiaris].	448	e-125

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
APP amyloid beta A4 protein [Bos taurus]. 770 0.0

APLP2 PREDICTED: amyloid beta (A4) precursor-like protein 2 [Bos taurus]. 445 e-124

APLP1 amyloid-like protein 1 [Bos taurus]. 243 8e-64

TFPI PREDICTED: tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) isoform 2 [Bos taurus]. 61.6 4e-09

Locus	Definition	Score	E value
APP	amyloid beta A4 protein [Bos taurus].	770	0.0
APLP2	PREDICTED: amyloid beta (A4) precursor-like protein 2 [Bos taurus].	445	e-124
APLP1	amyloid-like protein 1 [Bos taurus].	243	8e-64
TFPI	PREDICTED: tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) isoform 2 [Bos taurus].	61.6	4e-09

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL
APP amyloid beta A4 protein [Sus scrofa]. 1312 0.0

LOC100522215 PREDICTED: amyloid beta A4 protein-like [Sus scrofa]. 640 0.0

APLP2 PREDICTED: amyloid-like protein 2, partial [Sus scrofa]. 395 e-110

LOC100524259 PREDICTED: amyloid-like protein 1-like [Sus scrofa]. 142 1e-33

LOC100155068 hypothetical protein LOC100155068 [Sus scrofa]. 60.8 4e-09

Locus	Definition	Score	E value
APP	amyloid beta A4 protein [Sus scrofa].	1312	0.0
LOC100522215	PREDICTED: amyloid beta A4 protein-like [Sus scrofa].	640	0.0
APLP2	PREDICTED: amyloid-like protein 2, partial [Sus scrofa].	395	e-110
LOC100524259	PREDICTED: amyloid-like protein 1-like [Sus scrofa].	142	1e-33
LOC100155068	hypothetical protein LOC100155068 [Sus scrofa].	60.8	4e-09

Oligo-microarray probe: TOP

Probe ID Rel. Probe sequence
AGPOA4-02539 4.1 GCACACATTAGGCATTGAGAATTAAAACTTCTTTTGTCCGTGTACCTTCGGATCTTTGAT

Probe ID	Rel.	Probe sequence
AGPOA4-02539	4.1	GCACACATTAGGCATTGAGAATTAAAACTTCTTTTGTCCGTGTACCTTCGGATCTTTGAT

Assembly member: TOP

Release Contig/Singlet Clones Direction

20101001 20101001C-000097 135 fwd
20110601 20110601C-000106 137 fwd

Release	Contig/Singlet	Clones	Direction
20101001	20101001C-000097	135	fwd
20110601	20110601C-000106	137	fwd