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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
ITT01_0029_H11
Library: ITT01 (Intestine)
Individual: LWD2, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 2,589)
[FASTA format sequence]
TAGAAGGCAG TGGCTGCAGG TGGCTGTCGG TTTAAGCAGT TGCGTGCGCT CTCTCTCTCT
CTCTCTCTCT TCTGGGACTC TCGGGAGCTG CGGCTCCGGC GCCAGGTGGC AAGACGCGGG
TCTCGGAGAC GCCAGCCTCC GTGCATCCCA CTGTGGTTCG GGGGTGGTGG TTTTTAAGTA
CGGAAGGGCC CTTGGTTCCA CCGGAGGAAT CTGCCGTGGG TCCCCGAGTT CCTGGAGCTG
TCTTCCGTAT ACCTGAGTCA GACCAGAGCA CAGTCCGAAG GGCGGGCAGG AGGGCTCATC
TGTGTACTGT GTGCAGTAAA ACATTCCAGC CATCTGTCAG GAAAGTGTTC CCACTATGGA
TTTCAAGTCT GTCTCAAAGC AGCAGTCCAG GACCAGGACC TCTTCTAGGG AGATGAGAAG
ACTGAGTCCT ACAAACATTA AATGATTTTC TCAAGCAGCC TCAGTGCATA AGAATTGGGG
TCCAGGCCAC CACTCCGTCA GCCTGCCTCT AGGTGTGAAG GAGCGAGTGC CTGATCAGAA
TGGCTGTGGG ATGGTTTTAC CTGTCGGCCC TGGCGCTGTT CTCCCTGGGC TCCATGTGCA
TCCTCTCCAC CATCTATTGG ATGCGGTACT GGCACAAAGG CTTTGCCTGG GATGGCACCA
TACTCACGTT CAACTGGCAC CCGGTGCTCA TGGTGACTGG CATGGTGGTG CTCTACAGTG
CTGCGTCGCT GGCGTACCGC CTGCCCCAGT CATGGGTAGG GCCCAAGCTG CCCTGGAAGT
TGGGCCACGC AGCCATGCAC CTGATGGCCT TCATCCTGAC TGTGCTGGGG CTGGCGGCCG
TCTTTAACTT TCACAACCAC GAGAAGATCC CCAACCTCTA CTCCCTGCAC AGCTGGCTGG
GCATCACCAC CGTCTTCCTC TTCGCCTGCC AGTGGTTCTT GGGCTTTGTG GTCTTTCTGC
TGCCCTGGGC GTCTGTGCGG CTGCGCAGCC TCCTTAAACC CATCCACGTC TTCTTTGGAG
CCTCCATTCT CTCTCTGGCC ATTGCGTCTG TCATTTCCGG CATCAATGAG AAGCTCTTCT
TCAGTTTGAA AAATGGCACC ACTTCATACT CCAACCTGCC CGGTGAGGCC GTCTTCGCGA
ACAGTGCGGG GATGCTGGTG GTGGTCTTTG GGCTGCTGGT GCTCTATATC TTACAGGCCT
CGTCTTGGAA ACGCCCAGAG CCAGGGCTCC AGGCCGAAAG ACAGACCCTG TTGCACGGGG
AGGAGTGAAG CAGGAGGGGG TTCCAGGAGC AGTCGCCAGG CGGTCTTCAG AGGCTCTGCT
TTCCCGGGGG CTCCCATCTG GTTCAGGGCC CCAGTCCCCC TCGCCTCTGT GCTGGGCCTG
CTCTCCCCAC AGCCTGCTGC TCACCCCCTC TGCATGGTGG CTTTGGCTGC TCCAGCCCTT
CTTGGCATTG ACTTCCCACG TCCTCTTTTT ACCCCGGCCC CCTTGCCCTA GCTGCCCGCG
CCACTCCTGC TCACAAGGAG TCAAGGTCAT TTCCCCTTCA GACCCCCGGG GATGTGGGAG
AAAAGCCTGA TGGCTCAGAT GAACTGGGAG TGGAGCGCAG CCTGTGCTGT GAATGAGGGG
GAGGCGATGC TTCCATCAGC TTTCCCCGTG CAGGTCAGGC CGCCCGCCCT GGGTTGCGCT
TCTTCTGCTC TGGTCTCCAT CCAGCCCCTC CAGACGTGAG GCGGGGCGGA CACGCGTGCA
CGCGGTGGAG GGAGAGGGGC CAAGGGCAGA GCTGCTCCGC AGAGAAGCTG AGGGCCCCCT
GCTCCCGCTG CCTCGTGTCT ACACACGTGC CCTTCTTGCT GCTGCTACAG CCGGGGCCTG
GATCCCGGCC TTTCCCTGTG ACTGACACGC TCATCACCAT CGGACAGCTC TCTGAACCCT
GGTGGCCCTG TGTCCGAACC CTGGAAGCAG CCTTTCCCTT CCCTCCCCTC GTCAGGCCCG
GGCACCTTCA ACCTTGCTGT CTCGGCAGGG CCCTTGGCCA GCGGTTGTCA CGTGCCAGCT
CACCATGAAA CGTGCCGAAG ATGTGGTGTG TCGTGCCCAG CAGAGCCCTG GGAGCACGGC
CGCTTCTGGA GGCTTCCTTG CTGAGTGTCA AAGTGCCTCA CGTGCCCGTA CAGCAGCCAC
CCGCCTGGCA AACCCAGTCT CAGGTGTAAT GCTGCAGTGT GTGCCCTTGC CCTTTTCCCG
ACGAGACCGG GGTGGCGGGT CTTGCTTCTG TGTTGGCATC GCGGCTTTTC CTGCTCTCTG
CAAACCAGTG CTGCCAGGCC CTGGGCTCAG TACTGTTGTG CTTAGGTGAC AAGCAGCACA
ACACCAGGGG CCCCAAGTGG GCTTACTGCT TGGCAGGTGG CCACAAAGCT GGCCGTCCAC
CCTGCCCCAT GTGGCCAGAT GCTGGCGGGA GGCTACGGTG GAACTTCCTG ATCCACTGGA
ATGACTGCCA GGCACCTTGG TCCCAGGACC ACCTACACCC CTTTCCACGT GGGTAGGCGT
TTCACTTACG AAGCTGGATT TTCATTAAAT GTGTTTTTTA AGAATCAAAA AAAAAAAAAA
AAAAAAAAA
Deduced amino acid sequence: (length: 242) [FASTA format sequence]
MAVGWFYLSA LALFSLGSMC ILSTIYWMRY WHKGFAWDGT ILTFNWHPVL MVTGMVVLYS
AASLAYRLPQ SWVGPKLPWK LGHAAMHLMA FILTVLGLAA VFNFHNHEKI PNLYSLHSWL
GITTVFLFAC QWFLGFVVFL LPWASVRLRS LLKPIHVFFG ASILSLAIAS VISGINEKLF
FSLKNGTTSY SNLPGEAVFA NSAGMLVVVF GLLVLYILQA SSWKRPEPGL QAERQTLLHG
EE
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| SNPF01977 | 0.91b | 2 | 33.9 | |
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | CYBASC3 | cytochrome b ascorbate-dependent protein 3 isoform 1 [Homo sapiens]. | 355 | 2e-97 | O |
|
| CYBRD1 | cytochrome b reductase 1 isoform 1 [Homo sapiens]. | 174 | 3e-43 | |
|
| CYB561 | cytochrome b561 [Homo sapiens]. | 133 | 9e-31 | O |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Cybasc3 | cytochrome b ascorbate-dependent protein 3 [Mus musculus]. | 345 | 1e-94 | O |
|
| Cybrd1 | cytochrome b reductase 1 [Mus musculus]. | 175 | 1e-43 | |
|
| Cyb561 | cytochrome b561 [Mus musculus]. | 137 | 4e-32 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC483799 | PREDICTED: similar to cytochrome b, ascorbate dependent 3 protein [Canis familiaris]. | 340 | 4e-93 | O |
|
| LOC478796 | PREDICTED: similar to cytochrome b reductase 1 [Canis familiaris]. | 181 | 2e-45 | O |
|
| LOC610631 | PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis familiaris]. | 138 | 3e-32 | O |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CYBASC3 | cytochrome b ascorbate-dependent protein 3 [Bos taurus]. | 380 | e-105 | |
|
| CYBRD1 | cytochrome b reductase 1 [Bos taurus]. | 195 | 1e-49 | |
|
| CYB561 | cytochrome b561 [Bos taurus]. | 139 | 2e-32 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100519643 | PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 2 [Sus scrofa]. | 441 | e-123 | |
|
| CYBRD1 | cytochrome b reductase 1 [Sus scrofa]. | 189 | 5e-48 | |
|
| CYB561 | cytochrome b561 [Sus scrofa]. | 141 | 2e-33 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-05463 | 4.1 | TTCCACGTGGGTAGGCGTTTCACTTACGAAGCTGGATTTTCATTAAATGTGTTTTTTAAG |
Assembly member: TOP