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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  LNG01_0023_A02

Library: LNG01 (Lung)
Individual: LWD3, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 2,083)  [FASTA format sequence]
GTATTAGAGC GATACCGAGG ACCGGGAGGA AACTTGCTGC CTGCGATAAG GACACTGTGA
AGGTTTTGTT CGCTGGAAGA GGGGAGGTCT CTGGAATCCC TCCTGGATCT TTATTGAGGA
TTCGAAAAGA AGCAGGGCCA TGGGGACAGC GAAGGTCACT ACACCTCTGG TCTTTGCCAT
CACGATTGCT ACAATAGGCT CTTTCCAGTT TGGCTACAAC ACTGGAGTCA TCAATGCTCC
TGAGGCGGTG AGTGCCAGGC AACTAGAGTC AGAGTTTGGA CTAGGGAAAG TATTCCTTTA
GGTCTGGTTT CCAGAATTAA CAAGTTTAGA CAAACTTGGT ATCTCGCTTG GCAAAGACTG
GGGCGGGGGA AGATATTGGT GGAGTCTAGG TGCTCCCGGT ACCCTGGACT GTATCATCCC
TTCTTCCTCT CATCCTGTGA GGGGTGACAC ACTTCCCTTA TTATCCCTTA GGCGTTAGTC
ACAAAGTCAC CAGCTGGTGG GGGAGGGCTG GGGTAGTCAC TGAACTTCAG TACTACCACC
TACTGGCATT TTCAGGACAA TAAAAAATTG TTCTTTTCCA AGCTGGTAAC ATTAACTTCA
GTGTTATCTG CCTCTTTCCT TACTATCGAT TCATTCCCTT GATTGTTTAC CTGTGAAGTA
ACTAATGCTG TTGTTTTAGG GAGAGGAAGA GCCCCAATGC TTGTCTCTTT TCTCATCCAA
TTGTAACAGT CGTCTGTTCT CCCACCACCC ATTTTGATTC ACAGATCATA AAGGACTTTC
TCAACAACAC TTTGAGAGAG AAGTCAAAAA GCATGCCCTC TGAGGTGTTA CTCACGTCCC
TGTGGTCCTT GTCTGTGGCC ATATTCTCCG TTGGTGGTAT GATTGGCTCC TTTTCCGTTG
GACTCTTTGT CAACAAGTTT GGCAGGTATT GACCAGACAC TGGGCAAGGA AGGGGGGCTG
TCGTGGTTGT AGTGGGGGCA AGTGTTGAGA CTTAGAGCAG GGGGGTGATG ATGCATTTGA
ATGAGAGCAC CACAAATTCT GATCAAGGGA AAGCTCGTCC AAAGCTCAGC GTGACTGCCT
TGCTTGGAGC TCTCCTACCC CTCCCGCGAT GGCCTTGTGA ATGATGGGTC TGTCTGTTCA
GTCCAACCCA ATTCAGTTAT TCTCTGGGAA AGCCCATGGT GGCGTTTCCC CAGAAACGTA
CTTTATTTAC GAGGTCAAAA GCTTTTATTA CAGTTTCGGC GGGGGGTAGG AGTGTTTATG
CAAGTCATTT CATAATTTTT ACACCGCAGG ATTGGGAGGA GATATTTTAT AATCCTTGGT
CTCTGGGCAA ATATGGTTTA AAAGTCCCAG TGCCAGGCCA CACCCCAAAC CGATTATACC
AGCACCTCTG GGGATAGAAC CCATGTGTCT GTATTTTTCA GAGCTCCCCA GGGTAATTCC
ATTGAGCCCA CTCAAGTCAG AGTCATGGTC AAGTATCAGG ATGCTGATCC TCCAACATCT
GCCAGAGTTT TTAAGTTTCT AAGCAACTAC ATTGTAACAA GATGCAATAA GTTTAAAAAA
AAGAATCAGG AGTAGCCATC GTGGCGCAGT GGTTAACGAA TCCGACTAGG AACCATGAGG
TTGGGGGTTC GGTCCCTGCC CTTGCTCAGT GGGTTAACGA TCTGGTGTTG CCGTGAGCTG
TGGTGTAGGT TGCAGACGCG GCTCGGATCC CGCGTTGCTG TGGCTCTGGC ATAGGCCGGT
GGCTACAGCT CCGATTCAAC TCCTAGCCTG GGAACCTCCA TATGCTGCGG GAGCAGCCCA
AAGAAATAGC AAAAAGACAA AAAAAAAAAA AAAAAAAAAG AATCAGCACT GGTCTGAATT
TCTCTGGAGT GTGTTCTTGG AAGGGCTACT CAGAATTGCC TCTGGGCAGT ATTCTCAAAC
TTTAGCTTGC ATTCAGTCAC CTGGAGGCCT TTTTAGAACA CAGACTGCTG GGCTTCACCC
TAGATTTAGG CCTGATGATT AATAAATCTG AGATTGGGTG GGCGGTTTTA ATTTCTAGAT
GTTTGTGGTT CACTTTTGAG AAGAGAAAAA AAAAAAAAAA AAA

Deduced amino acid sequence:  (length: 73) [FASTA format sequence]
MVAFPQKRTL FTRSKAFITV SAGGRSVYAS HFIIFTPQDW EEIFYNPWSL GKYGLKVPVP
GHTPNRLYQH LWG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		SLC2A3	solute carrier family 2, facilitated glucose transporter member 3 [Homo sapiens].	90.9	4e-18
		SLC2A14	solute carrier family 2, facilitated glucose transporter member 14 [Homo sapiens].	89.7	9e-18
		SLC2A1	solute carrier family 2, facilitated glucose transporter member 1 [Homo sapiens].	68.2	3e-11

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Slc2a3	solute carrier family 2, facilitated glucose transporter member 3 [Mus musculus].	86.7	7e-17
		Slc2a1	solute carrier family 2, facilitated glucose transporter member 1 [Mus musculus].	69.7	8e-12
		Slc2a7	solute carrier family 2, facilitated glucose transporter member 7 [Mus musculus].	53.9	5e-07
		Slc2a5	solute carrier family 2, facilitated glucose transporter member 5 [Mus musculus].	51.6	2e-06

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		SLC2A3	solute carrier family 2, facilitated glucose transporter member 3 [Canis lupus familiaris].	95.9	1e-19
		SLC2A1	solute carrier family 2 (facilitated glucose transporter), member 1 [Canis lupus familiaris].	71.6	3e-12
		LOC489640	PREDICTED: similar to Solute carrier family 2, facilitated glucose transporter, member 5 (Glucose transporter type 5, small intestine) (Fructose transporter) [Canis familiaris].	53.9	6e-07

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		SLC2A3	solute carrier family 2, facilitated glucose transporter member 3 [Bos taurus].	91.7	2e-18
		LOC789418	PREDICTED: solute carrier family 2, facilitated glucose transporter member 3-like [Bos taurus].	82.8	1e-15
		SLC2A1	solute carrier family 2, facilitated glucose transporter member 1 [Bos taurus].	68.9	2e-11
		SLC2A5	solute carrier family 2, facilitated glucose transporter member 5 [Bos taurus].	50.4	6e-06

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100620118	PREDICTED: solute carrier family 2, facilitated glucose transporter member 7-like [Sus scrofa].	50.1	5e-06

Oligo-microarray probe:      TOP

Probe ID	Rel.	Probe sequence
AGPOA4-05197	4.1	AGAATCAGCACTGGTCTGAATTTCTCTGGAGTGTGTTCTTGGAAGGGCTACTCAGAATTG

Assembly member:      TOP

Release	Contig/Singlet	Clones	Direction
20030531	20030531C-005051	2	fwd
20030826	20030826C-001581	3	fwd
20040204	20040204C-001573	4	fwd
20050322	20050322C-001567	5	fwd
20060611	20060611C-006946	5	fwd
20070806	20070806C-008435	5	fwd
20080515	20080515C-003035	8	fwd
20101001	20101001C-002747	12	fwd
20110601	20110601C-003204	12	fwd