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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LNG01_0025_E01
Library: LNG01 (Lung)
Individual: LWD3, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,695)
[FASTA format sequence]
AAATGATATG GATTAATTTC AGATTACCGA TAGAAAAGGG AATGGTCCTC TTGACTGAAG
ATTGTTGACA GAGTTTTGCA TTTTGGGCAT TATCCCTTGT GGCTTGCACA GTGAACACCC
AAGTGTGCTT TATATAGTTC CCTTGGCTTT GACTCTGTGC TAGAGCAATG TCTGTTCTCT
TCCTCTGCAT TGAAAGGTTC ATTATCCTTT TAAATGTATT CAGAAAGTCA GCACATTGTA
TTAATTGTGT CTGAGGGTAT GAATGAGGAG TTCCGTGGTA GCTCGGCCAG GTTAAGAATC
TGTTATTGGG GAGTTCCCGT CGTGGCACAG TGGTTAACAA ATCTGACTAG GAACCATAAG
GTTGTGGGTT GGATCTCTGG CCTTGCTCAG TGGGTTGGGG ATCTGGCGTT GCCGTGAGCT
GTGGTGTAGG TTGCAGATGC GGCTCGGGTC CCACGTTGCT GTGGCTGTGG TGTAGGCCGG
TGGCTACAGC TCCGATTGGA CCCCTAGCCT GGGAACCTCC ACATGCTGTG GGAGCGGCCC
TAGAAAAAGC AAAAAGACCA AAAAAAAAAA AAAAGAGAGA GAGACTGTTA TTGTTACGGC
TGTGGTGCAG GTTCAATTCC TGGTCCAGGA ACTTGCACAT GCCCCGGGTA GGGCTAAAAA
AAACCAAGAA GGTTATGAAT GAGCCAGAAT ATCCCTTCAT AGATTTGTTC TATTATGATC
TGTCGTTACA GCTAACAGAA GATCTCTACT GTCAGGGGGA TCTTCATTGT TTGTAATTGG
GTGTTTATTA TAGGGTCTTC ATCCCAGAAT AATAACAGAA GGATTTGAAG CTGCAAAGGA
AAAGGCACTT CAGTTTTTGG AACAAGTTAA AGTAAGCAAA GAGATGGACA GGGAAACGCT
TATAGACGTG GCCAGAACAT CTCTACGTAC TAAAGTTCAT GCTGAACTTG CTGATGTCTT
AACAGAGGTA TGTGTTAGAT GTGGTGTGTG TCTGGTACAG TACACCTATA CTGAAGACCC
CTGGCAACTG GAACCATCCG TATTCTTACA AATTCCAATT AAAGAGTGCT ATCTAAAGTC
GTCACATACT GTGTGAAATA AATAGGTTCG TTTTTGTGGC AGTGATAACC TGATCTCTGT
CCCTAAAAGT AAAGTGAGGG AGTCCCTGTC GTGGTGCAGT GGAAACTAAT CTGACTAGGA
ACCATGACGT TTTGGGTTCG ATCCCTGGCC TCGCTCATTG GGTTACGGAT CCGGTGTTGT
GAGCTATAGC GTAGGTCACA GATGCGGCTC GAATCTGGCA TTGCTGTGCC TGTGGCATAG
GCTGGCAACT GTATGTAGCT CTGATTAGAC CCCAGCCTGG GAATGTCCAT ACACTGTGAG
TTCGACCCTA AAAAGACAAA AGGAAAAAAA AAAGTTTAGG AGTTCCCGTC GTGGCGCAGT
GGTTAATGAA TCTGACTAGG AACCATGAGG TTGCGGGTTC GATCCCTGCC CTTGCTCAGT
GGGTTAACAA TCCGGAGTTG CCGTGAGCTG TGGTGTAGGT TGCAGACGCG GCTCGGATCC
CGCATTGCTG TGGCTCTGGT GTAGGCCAGT GGCTACAGCT CCAATTCAAC CCCTAGCCTG
GGAACCTCCA TATGCTGCGG GAGCGGCCCA AAGAAATAGC AGAGAGACCA AAAAAAAAAA
AAAAAAAAAA AAAAA
Deduced amino acid sequence: (length: 70) [FASTA format sequence]
MDRETLIDVA RTSLRTKVHA ELADVLTEVC VRCGVCLVQY TYTEDPWQLE PSVFLQIPIK
ECYLKSSHTV
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | CCT6A | T-complex protein 1 subunit zeta isoform b [Homo sapiens]. | 112 | 1e-24 | |
|
| CCT6B | T-complex protein 1 subunit zeta-2 isoform 3 [Homo sapiens]. | 96.7 | 6e-20 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Cct6a | T-complex protein 1 subunit zeta [Mus musculus]. | 114 | 2e-25 | |
|
| Cct6b | T-complex protein 1 subunit zeta-2 [Mus musculus]. | 93.6 | 4e-19 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC480059 | PREDICTED: similar to T-complex protein 1, zeta subunit (TCP-1-zeta) (CCT-zeta) (CCT-zeta-1) [Canis familiaris]. | 114 | 3e-25 | |
|
| LOC606787 | PREDICTED: similar to T-complex protein 1, zeta subunit (TCP-1-zeta) (CCT-zeta) (CCT-zeta-1) isoform 4 [Canis familiaris]. | 114 | 3e-25 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CCT6A | T-complex protein 1 subunit zeta [Bos taurus]. | 114 | 3e-25 | |
|
| CCT6B | T-complex protein 1 subunit zeta-2 [Bos taurus]. | 90.5 | 4e-18 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100520782 | PREDICTED: t-complex protein 1 subunit zeta-like isoform 3 [Sus scrofa]. | 114 | 2e-25 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07051 | 4.1 | AATAAATAGGTTCGTTTTTGTGGCAGTGATAACCTGATCTCTGTCCCTAAAAGTAAAGTG |
Assembly member: TOP