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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LVRM1_0039_H04
Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,943)
[FASTA format sequence]
CTGCTCTTCT GCTCCCTGAA ACTCAGCTGC CAGGGGAGCC GGGGCTGCCC TACGAAGCCG
TCCCCTCCAT ACTGGACCCC TACAGGGAGC CACGTGTGCC CAGCGGGGGC ACCGCCCCAG
CTGATGCCCC AGAGGGGCCA CCCATCTCAA GAGGGGCTCC GGGTCCTGCC TGGCCTCCTC
ATGGCACATG AGCCAGAGCC TGAGGCTGAT GGGTTACTGG ACCTCAGCTT CCTGACGGAG
GAGGAACAGG AAGCCATTGC TGAGGTCCTG AAGCGAGATG CCCACCTACG GCAGCTGGAG
GAGGGACGGG TCAGAAAGCT CCGGGCATCA CTGGAAGACC CTGGGCAGCT GAAGATCCTA
ACAGGGGACT GGTTCCAGGA AGCACGCTCC CAGAGGCACC ACCACACCCA CCTGGGTTCT
GACCTAGTCC GAGCCTCCAT CCGCAGAAAG AAGGGCTCCA GGGGAGACCA GGCTCGGGGC
AGCAATGGGG AGGCTGAGGC TGCTGGGAAA GAGACCGAAG AGGCGCTGGA GCCCAGGCTC
CCCATAGACA AGGCCCCCCA AGAGAGTCTC AGCGAGGCTG AGGGACCTGA TTTCCCCTCA
CCATATGTCC CCACTAAGGC ATCAGATAAT GAAGAGGAGC CCCCGGCCCA GGAAGCGCCT
GGGCCGGCGG ACGTTCAGGT CCCAGCCGCG GAGGAGGCGG ACCCGGAGCC AAAGCCGCCG
TCGGGGGCGG AGGAGGAGCC GCAGCCCAGG CCTGCTCAGA CCCAGGAGGC GTCCGAGATC
CTGGAGAATG GGGAGGAGGC CCCGGGGCCC GACCCCTCAC TGGACCGTAT GCTCAGCAGC
AGCTCCTCCA TGTCCAGCCT CAACTCCTCC ACGCTGAGCG GCAGCCAGAT GAGCCTGTCG
GGGGAGGCGG AGGCGGCGGC AGTGCAGGTG CGCGGCTCCG TGCACTTCGC GCTGCACTAC
GAGCCTGGCG CCGCGGAGCT GCGCGTGCAC GTGATCCAGT GCCAGGGCCT GGCCGCCGCC
CGCCGCCGCC GCTCAGACCC CTACGTCAAA GGCTACCTCC TCCCGGATAA GCAGAGCAAG
CGCAAGACAA CAGTGAAGAA ACGGAATCTG AACCCGATCT TCAACGAGAC TCTCCGGTAC
TCTGTCCCGC AGGCTGAGCT CCAGGGCCGT GTGTTGAGCC TATCCGTGTG GCACCGCGAA
AGCCTGGGTC GCAACATCTT TCTGGGCGAA GTAGAAGTGC CCCTGGACAC GGGGAACTGG
GACTCCGAGC CCACCTGGCT CCCCCTGCAG CCCAGGGTCC CGCCATCTCC CGATGCCCTT
CCCAGCCGCG GGCTGCTCTC TCTGTCCCTC AAGTACATCC CCGCCGGCTC CGAGGGTGCA
GGACTGCCTC CGAGCGGGGA GCTGCACTTC TGGGTGAAGG AGGCTCAGGA CCTTGTGCCT
CTGCGCTCAG GATCTCTGGA TACTTACATA CAATGCTCTG TGCTGCCTGA TGACAGCCGG
GCCAGCCGCC AGCGGACGAG GGTGGTGCGT CGCAGCCTCA ACCCCATGTT CAATCACACC
ATGGTTTATG ATGGCTTCGA GCCTGCTGAC CTGCGCCAGG CCTGTGCCGA GCTCTCCCTG
TGGGACCATG GGACCCTGGC CAGTCGCCAA CTGGGGGGCA CACGCCTCAG CCTGGGCACC
GGCAGCAGCT ACGGGCTCCA GGTGCCCTGG ATGGACTCCA CGCCTGAGGA GAAGCAGCTG
TGGCAGACGC TCCTGGAGCG GCCGTGCGAG TGGGTGGACG GCCTTCTGCC CCTCAGAACC
AACCTGGCCC CCAGGACTTA GCTGCCCTAC AAGCCCTACA AAACCCCTCT CTCTGGACCC
CCATCTCAGG GCCTGCCCTT GGCTAAAGTC AATAAAGTCT GTTCTGAGGG CAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAA
Deduced amino acid sequence: (length: 565) [FASTA format sequence]
MPQRGHPSQE GLRVLPGLLM AHEPEPEADG LLDLSFLTEE EQEAIAEVLK RDAHLRQLEE
GRVRKLRASL EDPGQLKILT GDWFQEARSQ RHHHTHLGSD LVRASIRRKK GSRGDQARGS
NGEAEAAGKE TEEALEPRLP IDKAPQESLS EAEGPDFPSP YVPTKASDNE EEPPAQEAPG
PADVQVPAAE EADPEPKPPS GAEEEPQPRP AQTQEASEIL ENGEEAPGPD PSLDRMLSSS
SSMSSLNSST LSGSQMSLSG EAEAAAVQVR GSVHFALHYE PGAAELRVHV IQCQGLAAAR
RRRSDPYVKG YLLPDKQSKR KTTVKKRNLN PIFNETLRYS VPQAELQGRV LSLSVWHRES
LGRNIFLGEV EVPLDTGNWD SEPTWLPLQP RVPPSPDALP SRGLLSLSLK YIPAGSEGAG
LPPSGELHFW VKEAQDLVPL RSGSLDTYIQ CSVLPDDSRA SRQRTRVVRR SLNPMFNHTM
VYDGFEPADL RQACAELSLW DHGTLASRQL GGTRLSLGTG SSYGLQVPWM DSTPEEKQLW
QTLLERPCEW VDGLLPLRTN LAPRT
SNP mapping information
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | SYTL1 | synaptotagmin-like protein 1 isoform 1 [Homo sapiens]. | 759 | 0.0 | O |
|
| SYTL2 | synaptotagmin-like protein 2 isoform d [Homo sapiens]. | 246 | 4e-65 | O |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Sytl1 | synaptotagmin-like protein 1 [Mus musculus]. | 707 | 0.0 | O |
|
| LOC100505202 | PREDICTED: synaptotagmin-like protein 1-like isoform 1 [Mus musculus]. | 704 | 0.0 | |
|
| Sytl2 | synaptotagmin-like protein 2 isoform 3 [Mus musculus]. | 252 | 8e-67 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC487346 | PREDICTED: similar to synaptotagmin-like 1 [Canis familiaris]. | 761 | 0.0 | O |
|
| LOC485154 | PREDICTED: similar to synaptotagmin-like 2 isoform a isoform 5 [Canis familiaris]. | 249 | 9e-66 | |
|
| LOC484360 | PREDICTED: similar to synaptotagmin 3 [Canis familiaris]. | 99 | 1e-20 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| SYTL1 | PREDICTED: synaptotagmin-like 1 [Bos taurus]. | 734 | 0.0 | O |
|
| SYTL2 | synaptotagmin-like protein 2 [Bos taurus]. | 251 | 2e-66 | |
|
| SYTL4 | synaptotagmin-like protein 4 [Bos taurus]. | 191 | 2e-48 | |
|
| SYTL3 | PREDICTED: synaptotagmin-like 3 isoform 2 [Bos taurus]. | 135 | 1e-31 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| SYTL1 | PREDICTED: LOW QUALITY PROTEIN: synaptotagmin-like protein 1 isoform 1, partial [Sus scrofa]. | 771 | 0.0 | |
|
| LOC100627498 | PREDICTED: hypothetical protein LOC100627498 [Sus scrofa]. | 248 | 7e-66 | |
|
| SYTL5 | PREDICTED: synaptotagmin-like protein 5 isoform 2 [Sus scrofa]. | 170 | 2e-42 | |
|
| LOC100626439 | PREDICTED: synaptotagmin-5-like isoform 2 [Sus scrofa]. | 97.4 | 2e-20 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-08649 | 4.1 | TCTGGACCCCCATCTCAGGGCCTGCCCTTGGCTAAAGTCAATAAAGTCTGTTCTGAGGGC |
Assembly member: TOP