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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LVRM1_0067_B11
Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,393)
[FASTA format sequence]
CTCGACACCG ACGCCGCTGC CGCCGCAGGC CCCTCCACGC CCACACCCCC TACCCACTGC
CCAGCCATGG AGGCCATCAA GAAGAAGATG CAGATGCTGA AGCTGGACAA GGAGAACGCC
ATCGACCGGG CCGAGCAGGC GGAGTCGGAT AAGAAAGCTG CTGAGGAGAA GTGCAAGCAG
GTGGAGGAGG AGCTGACGCA CCTCCAGAAG AAGCTGAAGG GGACAGAGGA TGAGCTGGAC
AAATACTCCG AGAACCTGAA GGACGCGCAG GAAAAGCTGG AGTTGAGCAA GAAGAAAGCC
TCCGACGCCG AAGGGGATGT AGCAGCTCTC AATCGGCGCA TCCAACTCGT TGAGGAGGAG
TTGGACAGGG CTCAGGAACG ACTGGCCACA GCCCTGCAGA AGCTTGAGGA GGCAGAAAAG
GCTGCAGATG AGAGCGAGAG AGGAATGAAG GTGATAGAAA ACCGGGCCAT GAAAGATGAG
GAGAAGATGG AGATTCAGGA GATGCAGCTC AAAGAGGCCA AGCACATTGC CGAGGAGGCC
GACCGCAAAT ACGAGGAGGT AGCTCGTAAG TTGGTCATCC TGGAGGGCGA GCTGGAGAGG
GCAGAGGAGC GTGCCGAGGT GTCTGAACTA AAATGTGGTG ACCTGGAAGA AGAACTCAAG
AATGTCACCA ACAACCTGAA GTCGCTAGAG GCTGCATCTG AAAAGTATTC TGAAAAGGAG
GATAAATATG AAGAAGAGAT TAAACTTCTG TCTGACAAAC TGAGAGGCTG AGACCCGTGC
TGAATTTGCA GAGAGAACAG TTGCAAAACT GGAAAAGACC ATCGATGACC TGGAAGAAAA
ACTTGCCCAG GCCAAAGAAG AGAACGTGGG CTTACATCAG ACACTGGATC AGACACTAAA
CGAACTAAAC TGTATATAAC CAAAACAGAA GAGTCTCGTT CCATCAGAAA CTCCAGAGCT
ACGTGTTTTT CTCTTCTCTT GTAAGAAGTT TCTTTTGTTA TTGCCTCTTT GCTTTGCTGG
AAATGTCAAG CAAATTATGA ATACGTGACC AAATATTTTG TATCAGAAAA GCTTTGAGCA
CCAGTTAAAT CTATTCCTTC CTTTTTTTCA AGTGGCACCA GCTTTTTCAG CTCTATTTTT
ATCCTTAAAT TGCATTTATT CCTAAAGTAG GCAGGGTATT TCATATTGAG CATACTCTCT
TAAGACTGAG GGCATTTGGT TCCTGGGAGA ATAGACAACC CCACACTTTA AAAATACAGA
CTCCAATGTC TAGTCATGGG TCAATTTAAA AAGTTGAAGA ATATCCACTG CTGGTCACAC
TATAGGAGGC CAGGGACCAT CACATTAAAA TGAGTGGGGA TTTTCCAGCC AGAGTAAAAA
AAAAAAAAAA AAA
Deduced amino acid sequence: (length: 234) [FASTA format sequence]
MEAIKKKMQM LKLDKENAID RAEQAESDKK AAEEKCKQVE EELTHLQKKL KGTEDELDKY
SENLKDAQEK LELSKKKASD AEGDVAALNR RIQLVEEELD RAQERLATAL QKLEEAEKAA
DESERGMKVI ENRAMKDEEK MEIQEMQLKE AKHIAEEADR KYEEVARKLV ILEGELERAE
ERAEVSELKC GDLEEELKNV TNNLKSLEAA SEKYSEKEDK YEEEIKLLSD KLRG
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 1 [Homo sapiens]. | 311 | 1e-84 | |
|
| TPM2 | tropomyosin beta chain isoform 1 [Homo sapiens]. | 275 | 1e-73 | |
|
| TPM1 | tropomyosin alpha-1 chain isoform 1 [Homo sapiens]. | 273 | 2e-73 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm2 | tropomyosin beta chain [Mus musculus]. | 276 | 3e-74 | |
|
| Tpm1 | tropomyosin alpha-1 chain isoform 9 [Mus musculus]. | 273 | 2e-73 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis familiaris]. | 315 | 7e-86 | O |
|
| LOC481598 | PREDICTED: similar to Tropomyosin beta chain (Tropomyosin 2) (Beta-tropomyosin) isoform 3 [Canis familiaris]. | 276 | 3e-74 | |
|
| LOC480137 | PREDICTED: similar to tropomyosin 3, gamma isoform 20 [Canis familiaris]. | 273 | 3e-73 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 312 | 5e-85 | O |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 273 | 3e-73 | |
|
| TPM1 | tropomyosin alpha-1 chain [Bos taurus]. | 271 | 1e-72 | |
|
| TPM2 | tropomyosin beta chain [Bos taurus]. | 257 | 2e-68 | O |
|
| LOC783188 | PREDICTED: tropomyosin 4 [Bos taurus]. | 125 | 7e-29 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 273 | 2e-73 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 267 | 1e-71 | |
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 251 | 9e-67 | |
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 177 | 1e-44 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP