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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LVRM1_0081_E01
Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 3,424)
[FASTA format sequence]
GATCGCTGGG ACATGACCTT GGGTTAGCTA GCAGTGGGGA AAAAAGACTT GTTTGGATTA
TCCTATAAGC CCTCTTCATT GTGAATAACT ATTATTTTCT TAGCCATTTG CAGATTAGTT
CCCTGGATAC CACAAACTGG ATACCAGAAA TTCTCTTTAA AGGTACAGAA GGAAAAAATA
AGAAATAAAA GATTCAAAAT ATTTACAAGA AGATGGAAAG GAGGATCCTA CAGTTGGGAA
CAAACTAGAG AATCTTCTGA ACCTGCCAGG ATCTGGAGAC TCTCCAGGCA TGATGGACAA
ACACTCTGTC TTGTATTTTA TCTTGCTGAG TGGTCTGATT GACAAGAGCC AAGCCTGTTT
CTGTGATCAC TACCCATGGA CTCAGTGGTC CAGCTGCTCA AAAACCTGTA ATTCTGGAAC
CCAGACCAGA CAGAGACAAA TTACTATAAA TCAGTACTAT CTTGACAACT TTTGTGACCG
GCTTTGCACC AAGCAGGAGA CCAGAGAATG TAACTGGCAA ACTTGTCCTA TCAATTGCCT
CCTGGGAGAT TATGGACCAT GGTCAGATTG TGACCCTTGT GTTGAAAAAC AGTTTAAGGT
TAGGTCCATC TTGCACCCCA ATCAGTTTGG AGGACAACCA TGTACTGAGC CACTCATGAC
CTTTCGACCA TGTATTCCAT CTAAACTCTG CAAAATTGAA GAGGTTGACT GCAAGAATAA
ATTCCGCTGT GACAGTGGTC GCTGCATTGC CAGCAAGTTG GAATGCAATG GAGAAAATGA
TTGTGGAGAC AATTCGGATG AGAGGAATTG TGGGAGAACA AAAGCAGTAT GCTCACGGAA
GTATAATCCC ATCCCTAGTG TACAGTTGAT GGGCGCTGGG TTTCATATTC TGGCAGGAGA
GCCCAGAGGA GAAGTCCTAG GTAATTCTTT CACTGGAGGA ATATGTAAAA CCGTCAAAAG
CAGTAAAGCC AGTAATCCAT TTCGTGTTCC AGCCAATCTA GAAAACGTCG ACTTTGAGGT
ACAAACTAAA GAAGATGATT TTGAAACAGA TTTCTTTGAG GATTTAATTC CTCTTGAAAA
TAGTAAAGAT CAACAAGCCA CAGGTTTCGG CCAAGAGAAG AGCTCTTTTC ATGTACCAAT
TTTTTATTCC TCAAAGAAAA GCCAAACCAG CAGCCATAAT TCTGCCTTCA AACAAGCTAT
TCAAGCCTCC CACAAAAAGG ATTCCAGTTT TATTAGGATC CATAAAGTGA TAAAAGTCTT
AAACTTCACA ATGAAAACTA AAGATTTGCA GCTTTCTGAC GTCTTTTTGA AAGCACTTAA
CCATCTGCCT CTAGAATACA ACGCTGCTTT GTACAGCCGG ATATTTGATG ATTTTGGGAC
TCACTATTTC ACCTCTGGCT CCCTGGGAGG CGTGTACGAC CTTCTCTATC AGTTTAGCAA
TGAGGAACTG AAGAACTCAG GTTTAACACA GGAAGAAGCC AAAAACTGTA TCCGGATTGA
AACAAAGAAA CGTTATTTTA TAGTTACAAA AACAAAGGTG GAACACCGGT GCACCACAAA
CAGGATGTCC GAGAAATACG AAGGTTCCTT TTTGCAAGGA TCAGAGAAAT CCATATCCCT
GGTTAAAGGT GGAAGAAGTG AGTATGCAGC GGCTTTGGCA TGGGAGAAAG GGAGTTCTGG
CCCAGGAGAG AAGACATATT CTGAGTGGTT GGAATCAGTG AAGGAAAATC CTGCTGTGAT
TGACTTTGAG CTTGCTCCCA TCACAGATTT GGTAAGAAAC ATCCCCTGTG CGGTGACAAG
ACGGAACAAC CTCAGGAGAG CTTTCCGAGA ATACGCAGCC AAATTTGACC CTTGCCAGTG
TGCTCCGTGC CCCAACAACG GCCGCCCTGT GCTCTCAGGG ACCGAATGTC TATGTGTGTG
CCAGAGCGGC ACCTACGGTG ACAACTGTGA GAGGCGTGCC CCGGATTACA AATCTAATGC
CGTAGATGGG AACTGGGGCT GCTGGTCTTC CTGGAGCACA TGTGACGCTA CGTACAAGAG
ATCAAGGACC CGAGAATGCA ACAACCCTGC CCCCCGGCAA GGAGGGAAAC CCTGCGACGG
GGAGAGGCGG CAGGAGGAAC ACTGCACATT CTCCATAATG CAGAACACTG GACAGCCATG
CATCGGTGAT GATGAGGACA TGAAAGAAAT AGACCTTCCT GAAATAGAAT CAGATTCAGG
GTGTCCTCAA CCAGTCCCTC CAGAAAATGG ATTTATTCGG AATGAAAAGA CACTGTATTC
AGTTGGGGAA GATGTTGAAA TTGTATGCCT TACTGGATTC AAAACTGTTG GCTACCAGTA
CTTCAGATGC TTACCTGACA GAACCTGGAG GCGAGGAGAT GTGGAATGCC AGCGGACTGA
CTGCCTCTTG CCAGTGGTGC CAGAAGTACT GAAACTGTCA CCATTTCAGA GATTGTATAA
AATTGGTGAC TCCATTGAGC TAAGCTGTCC CAAAGGCTTT GTCATTGCTG GGCCATCGAG
GTACACATGC AGTGGGGATT CCTGGACACC ACCTATCTCA AGCTCACTCA CCTGTGAACA
AGATTTTCTG ACACGCTTAA AGGGCCATTG TCAACCAGGA CAAAAACAGT TGGGATCTGA
ATGTGTTTGC CTGTCTCCAG AAGAAGACTG CAGCCATCAT TCAGAAGATC TCTGTGTGCT
TGATACAGAC TCCAATCATT ACTTTACTTC ATCCGCTTGT AAGTTTTTGG CCGAGAAATG
TTTAAATAAT CAGCAACTCC AATTTCTACA TATTGGTTCG TGCCAAGATG GTCCACAGTT
GGAATGGGGT CTTGAAAGGA TAAAACTTTC ATCCAGTAGC ACAAAGAATG AATCCTGTGG
CTATGATACC TGCTACAGCT GGGAAGAATG TTCAGCCACC ACCTCCAAGT GCATCTGCCT
ACTGCCCTTC CAGTGTTTGA AGGGTGGATA CCAACACTAC TGCGTCAAAA TGGGATCATC
AACGACCACA AGAACCATGA ACATCTGTGA AGTAGGAGCC ATAAGATGTG CCCTCAGGAA
AATGGAAATA CTTTATCCTG GGAGATGTAG GTCTAACTGA AATCTTGATA AACAGATTTA
CTGTCCAAAA ATAATCCCTA CAGAGATGCT CTTGTATAAA CAGCAGACTG CCACATCCAG
GAGTTACTAA CATAAATTCT TTTGTGTTAG TTTCATGTAA TTATTCTCCC TGCCTCTTGT
GTCTTCTCCT CTATCCAATT CTAGTCCACA CCCCTAGGTA ATAACTTTCA CATCAGTCTA
GTAAATTATT CTGTTCATGT GGCACTAAAA TGATGGCACT TCTAATGACC TTATGAAGTA
CAAAAACCTT AATTTTCTTC AATGAATCAA TAAACATAGA AGTCTCGAAA AAAAAAAAAA
AAAA
Deduced amino acid sequence: (length: 936) [FASTA format sequence]
MMDKHSVLYF ILLSGLIDKS QACFCDHYPW TQWSSCSKTC NSGTQTRQRQ ITINQYYLDN
FCDRLCTKQE TRECNWQTCP INCLLGDYGP WSDCDPCVEK QFKVRSILHP NQFGGQPCTE
PLMTFRPCIP SKLCKIEEVD CKNKFRCDSG RCIASKLECN GENDCGDNSD ERNCGRTKAV
CSRKYNPIPS VQLMGAGFHI LAGEPRGEVL GNSFTGGICK TVKSSKASNP FRVPANLENV
DFEVQTKEDD FETDFFEDLI PLENSKDQQA TGFGQEKSSF HVPIFYSSKK SQTSSHNSAF
KQAIQASHKK DSSFIRIHKV IKVLNFTMKT KDLQLSDVFL KALNHLPLEY NAALYSRIFD
DFGTHYFTSG SLGGVYDLLY QFSNEELKNS GLTQEEAKNC IRIETKKRYF IVTKTKVEHR
CTTNRMSEKY EGSFLQGSEK SISLVKGGRS EYAAALAWEK GSSGPGEKTY SEWLESVKEN
PAVIDFELAP ITDLVRNIPC AVTRRNNLRR AFREYAAKFD PCQCAPCPNN GRPVLSGTEC
LCVCQSGTYG DNCERRAPDY KSNAVDGNWG CWSSWSTCDA TYKRSRTREC NNPAPRQGGK
PCDGERRQEE HCTFSIMQNT GQPCIGDDED MKEIDLPEIE SDSGCPQPVP PENGFIRNEK
TLYSVGEDVE IVCLTGFKTV GYQYFRCLPD RTWRRGDVEC QRTDCLLPVV PEVLKLSPFQ
RLYKIGDSIE LSCPKGFVIA GPSRYTCSGD SWTPPISSSL TCEQDFLTRL KGHCQPGQKQ
LGSECVCLSP EEDCSHHSED LCVLDTDSNH YFTSSACKFL AEKCLNNQQL QFLHIGSCQD
GPQLEWGLER IKLSSSSTKN ESCGYDTCYS WEECSATTSK CICLLPFQCL KGGYQHYCVK
MGSSTTTRTM NICEVGAIRC ALRKMEILYP GRCRSN
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | C6 | complement component C6 precursor [Homo sapiens]. | 1618 | 0.0 | O |
|
| C7 | complement component C7 precursor [Homo sapiens]. | 432 | e-120 | |
|
| C8A | complement component C8 alpha chain precursor [Homo sapiens]. | 299 | 1e-80 | |
|
| UNC5D | netrin receptor UNC5D precursor [Homo sapiens]. | 65.9 | 2e-10 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| C6 | complement component 6 [Mus musculus]. | 1204 | 0.0 | O |
|
| C7 | complement component C7 [Mus musculus]. | 429 | e-120 | O |
|
| C8a | complement component C8 alpha chain precursor [Mus musculus]. | 295 | 2e-79 | |
|
| C8b | complement component C8 beta chain precursor [Mus musculus]. | 264 | 4e-70 | |
|
| Sema5a | semaphorin-5A [Mus musculus]. | 61.6 | 4e-09 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC479348 | PREDICTED: similar to Complement component C6 precursor isoform 1 [Canis familiaris]. | 1629 | 0.0 | O |
|
| LOC479349 | PREDICTED: similar to complement component 6 [Canis familiaris]. | 758 | 0.0 | |
|
| LOC489221 | PREDICTED: similar to complement component 7 precursor isoform 1 [Canis familiaris]. | 411 | e-114 | |
|
| LOC609339 | PREDICTED: similar to complement component (3b/4b) receptor 1 isoform F precursor [Canis familiaris]. | 64.7 | 6e-10 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| C6 | complement component C6 precursor [Bos taurus]. | 1656 | 0.0 | |
|
| C7 | complement component C7 precursor [Bos taurus]. | 435 | e-121 | |
|
| C8A | complement component C8 alpha chain [Bos taurus]. | 308 | 2e-83 | |
|
| C8B | complement component 8, beta polypeptide [Bos taurus]. | 291 | 3e-78 | |
|
| SEMA5A | PREDICTED: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A [Bos taurus]. | 65.5 | 3e-10 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| C6 | complement component C6 [Sus scrofa]. | 1902 | 0.0 | |
|
| LOC100627296 | PREDICTED: complement component C6-like [Sus scrofa]. | 511 | e-144 | |
|
| C7 | complement component C7 precursor [Sus scrofa]. | 430 | e-120 | |
|
| C8A | complement component C8 alpha chain [Sus scrofa]. | 301 | 2e-81 | |
|
| LOC100519793 | PREDICTED: hemicentin-1-like [Sus scrofa]. | 60.8 | 5e-09 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-08648 | 4.1 | GTTCATGTGGCACTAAAATGATGGCACTTCTAATGACCTTATGAAGTACAAAAACCTTAA |
Assembly member: TOP