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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
MLN01_0094_A06
Library: MLN01 (Mesenteric lymph nodes)
Individual: LWD2, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,046)
[FASTA format sequence]
GCTTGTCCTC CGGTCGCGTT GCCACCACAG CGGCCGCTGC CGGGCGCGGT TACGGCGGGT
CGGTTGGTGT GTCTTTCAGC GTCGATTTCT GTGCAGTTGA ACGCCTGCCA TGGCTGATTT
AGATCCGTTC GGCGCCCCCG CCGGCCCCTC GCTGGGGAAC GGAGTGGCCG GCGAGGAGGA
CCCGGCCGCG GCCTTCTTGG CGCAGCAGGA GAGCGAGATT GCTGGCATCG AGAACGACGA
GGCCTTCGCC ATCCTGGACG GAGGCGCTCC TGGGCCCCAG CCGCACGGCG AGCCGCCGGG
GGGTCCGGAT GCCGTTGATG GAGTGATGAA TGGCGAATAC TACCAGGAGA GTAATGGGCC
GACAGACAGT TATGCAGCTA TTTCACAAGT GGATCGATTG CAGTCAGAGC CTGAAAGTAT
CCGTAAATGG AGAGAAGAGC AAACGGAACG CTTGGAAGCC CTTGATGCCA ATTCTCGGAA
GCAGGAAGCA GAGTGGAAAG AAAAAGCAAT AAAGGAGCTG GAAGAGTGGT ATGCAAGGCA
GGACGAGCAG TTACAAAAGA CGAAAGCAAA CAACAGGGCA GCAGAAGAAG CCTTTGTAAA
TGACATTGAA GAGTCGTCCC CAGGCACGGA GTGGGAACGG GTGGCCCGGC TGTGTGACTT
TAACCCCAAG TCCAGCAAGC AGGCCAAAGA TGTCTCCCGC ATGCGTTCTG TCCTCATCTC
CCTCAAGCAG GCCCCCCTGG TGCACTGAAG AGCCACCATG TGGAAACACT ACATCTGCAA
TATCTTAATC CTACTCAGTG AAGCTCTTCA CAGTAATTGG ATTAATTATG TTGAGTTCTT
TTGGACCAAA CCTTTTTGTC TTTAGAGTTG ATCATTGTTT GTGATTGCAT GTTTCCTTCA
ACTGTGTTCT CCCTGGCATT CAGAGAGGAG CGGAGGCGCC CAGGGAAGGG AGGGAGGCCT
CCCAAGGGCA GCCTCAACCT CTGCTTTTGT GCATTATTCT GAGAATAAAT TTCTGTTTAA
AACTAAAAAA AAAAAAAAAA AAAAAA
Deduced amino acid sequence: (length: 212) [FASTA format sequence]
MADLDPFGAP AGPSLGNGVA GEEDPAAAFL AQQESEIAGI ENDEAFAILD GGAPGPQPHG
EPPGGPDAVD GVMNGEYYQE SNGPTDSYAA ISQVDRLQSE PESIRKWREE QTERLEALDA
NSRKQEAEWK EKAIKELEEW YARQDEQLQK TKANNRAAEE AFVNDIEESS PGTEWERVAR
LCDFNPKSSK QAKDVSRMRS VLISLKQAPL VH
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | CLTA | clathrin light chain A isoform a [Homo sapiens]. | 368 | e-102 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Clta | clathrin light chain A isoform a [Mus musculus]. | 369 | e-102 | |
|
| Cltb | clathrin light chain B [Mus musculus]. | 237 | 1e-62 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC474765 | PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 3 [Canis familiaris]. | 370 | e-102 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CLTA | clathrin light chain A [Bos taurus]. | 355 | 3e-98 | |
|
| CLTB | clathrin light chain B [Bos taurus]. | 245 | 5e-65 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CLTA | PREDICTED: clathrin light chain A isoform 1 [Sus scrofa]. | 385 | e-107 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-18430 | 4.1 | AGGCCTCCCAAGGGCAGCCTCAACCTCTGCTTTTGTGCATTATTCTGAGAATAAATTTCT |
Assembly member: TOP