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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVR01_0027_F12
Library: OVR01 (Ovary)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,227)
[FASTA format sequence]
GCAGCGTCAT GGCGCGCTTC TTCCGCGCGG GCCCGGGCTT ACCCTTCCGA GAGGTGCTCT
CGCGGGCAGT GTGGGGTCGT GCCGACAATG GCGGCCTCAG CCCGAAGGTC GGAACCGGAG
ACGCAGGGTC CCTTACAAAG CGTGAGCCGT TCCTCTCCAA GAGTGAGTGG CAAAAGAAGC
TGACTCCAGA GCGATTCCAC GTCACGAGAG AAAAAGGGAC AGAACCGCCT TTCAGTGGGA
CCTACCTGAA TAACAAGGAA GCAGGAATGT ATCACTGTGT GTGCTGTGAC AGCCCACTCT
TCAGCTCTGA GAAAAAGTAC TGCTCTGGCA CTGGATGGCC TTCATTTTCT GAGGCTCACG
GCACATCTGG CTCTGATGAG AGTGACACAG GGATCCTGAG ACGTGTGGAC ACCTCGCTGG
GAACAGCTCG CACGGAGGTT GTCTGCAAGC AGTGCGAAGC TCACCTTGGC CATGTGTTTC
CTGATGGACC TGGGCCTACA GGTCAGAGGT TTTGCATCAA CAGTGTGGCA CTCAAGTTCA
AACCAAGGAA ACACTGACCA TCGCCAGGAG TCCCTTTCTC TTCCACCCTC TCATTTCCAA
ACTCGATTTT CATAATTTAT GCAAATGACT AGTTTTATTA ATGACCAAAC TAGGCTAAGC
TTGCTGGCAT ACCTTCTCTA ATTCATTACC TGGAGTCAGC TCCACCCTGG CTCTGGCTCT
GACTAGAATT TCACGGAATG ACAGAGGGGC AGTCCTTTCC CTTAAATCAA CATCTGTGGG
CTTTGCCAGG ACCAGAGGGC ATGACTCTTT GGGGACATTA GGAGGCTGAT GGATAAGCCA
AAGAACTCCT ATAAAACTAT GCTGAATTTT CCATTGCAGT CAAGTGTTTC ACAGACATGT
ATAGGTGAGA GGTCAAACGA GAAGAGGAAT GAAAATACGG GATGAGGATG ATCCACAGTC
CCAGTGTGGA AAAGGCAATA AGGAGGCAGG TTGTGGACGA GCTGCGTTTG GGGAGGCACA
TGTGGGGATC CACGGGATGC AGGAGATTTT TCCCAAAACC TTAGACTGTC TTGAACATTC
TAATTCCAAC CTCTCTACTT GCAACTAACT TTCAATGGGC GTTTGTTAAA CTTTAGTGAT
AATGAATACA AGTGGCTACA AAGTTAAACT TTAAAATGTT CAAATAAAAT ATTTAAATTT
GTATTTGCAA AAAAAAAAAA AAAAAAA
Deduced amino acid sequence: (length: 182) [FASTA format sequence]
MARFFRAGPG LPFREVLSRA VWGRADNGGL SPKVGTGDAG SLTKREPFLS KSEWQKKLTP
ERFHVTREKG TEPPFSGTYL NNKEAGMYHC VCCDSPLFSS EKKYCSGTGW PSFSEAHGTS
GSDESDTGIL RRVDTSLGTA RTEVVCKQCE AHLGHVFPDG PGPTGQRFCI NSVALKFKPR
KH
SNP mapping information
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | MSRB2 | methionine-R-sulfoxide reductase B2, mitochondrial precursor [Homo sapiens]. | 297 | 1e-80 | O |
|
| MSRB3 | methionine-R-sulfoxide reductase B3 isoform 1 [Homo sapiens]. | 143 | 4e-34 | O |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Msrb2 | methionine-R-sulfoxide reductase B2, mitochondrial precursor [Mus musculus]. | 272 | 4e-73 | O |
|
| Msrb3 | methionine-R-sulfoxide reductase B3, mitochondrial precursor [Mus musculus]. | 140 | 3e-33 | O |
|
| Sepx1 | methionine-R-sulfoxide reductase B1 [Mus musculus]. | 53.5 | 3e-07 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC608357 | PREDICTED: similar to Methionine-R-sulfoxide reductase B [Canis familiaris]. | 280 | 2e-75 | O |
|
| LOC608386 | PREDICTED: similar to methionine-R-sulfoxide reductase B3 [Canis familiaris]. | 139 | 4e-33 | |
|
| SEPX1 | selenoprotein X, 1 [Canis lupus familiaris]. | 59.7 | 6e-09 | O |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| MSRB2 | methionine-R-sulfoxide reductase B2, mitochondrial [Bos taurus]. | 311 | 7e-85 | |
|
| MSRB3 | PREDICTED: methionine sulfoxide reductase B3 isoform 1 [Bos taurus]. | 140 | 2e-33 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100520263 | PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like [Sus scrofa]. | 387 | e-108 | |
|
| LOC100624041 | PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like [Sus scrofa]. | 305 | 3e-83 | |
|
| LOC100511693 | PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like [Sus scrofa]. | 73.2 | 3e-13 | |
|
| SEPX1 | methionine-R-sulfoxide reductase B1 [Sus scrofa]. | 56.6 | 3e-08 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-04492 | 4.1 | GCAACTAACTTTCAATGGGCGTTTGTTAAACTTTAGTGATAATGAATACAAGTGGCTACA |
Assembly member: TOP