[Help]
[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0064_D07
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,397)
[FASTA format sequence]
CTCACTCGAC ACCGACGCCG CTGCCGCCGC AGGCCCCTCC ACGCCCACAC CCCCTACCCA
CTGCCCAGCC ATGGAGGCCA TCAAGAAGAA GATGCAGATG CTGAAGCTGG ACAAGGAGAA
CGCCATCGAC CGGGCCGAGC AGGCGGAGTC GGATAAGAAA GCTGCTGAGG AGAAGTGCAA
GCAGGTGGAG GAGGAGCTGA CGCACCTCCA GAAGAAGCTG AAGGGGACAG AGGATGAGCT
GGACAAATAC TCCGAGAACC TGAAGGACGC GCAGGAAAAG CTGGAGTTGA GCGAGAAGAA
AGCCTCCGAC GCCGAAGGGG ATGTAGCAGC TCTCAATCGG CGCATCCAAC TCGTTGAGGA
GGAGTTGGAC AGGGCTCAGG AACGACTGGC CACAGCCCTG CAGAAGCTTG AGGAGGCAGA
AAAGGCTGCA GATGAGAGCG AGAGAGGAAT GAAGGTGATA GAAAACCGGG CCATGAAAGA
TGAGGAGAAG ATGGAGATTC AGGAGATGCA GCTCAAAGAG GCCAAGCACA TTGCCGAGGA
GGCCGACCGC AAATACGAGG AGGTAGCTCG TAAGTTGGTC ATCCTGGAGG GCGAGCTGGA
GAGGGCAGAG GAGCGTGCCG AGGTGTCTGA ACTAAAATGT GGTGACCTGG AAGAAGAACT
CAAGAATGTC ACCAACAACC TGAAGTCGCT AGAGGCCGCA TCTGAAAAGT ATTCTGAAAA
GGAGGATAAA TATGAAGAAG AGATTAAACT TCTGTCTGAC AAACTGAAAG AGGCTGAGAC
CCGTGCTGAA TTTGCAGAGA GAACAGTTGC AAAACTGGAA AAGACCATCG ATGACCTGGA
AGAAAAACTT GCCCAGGCCA AAGAAGAGAA CGTGGGCTTA CATCAGACAC TGGATCAGAC
ACTAAACGAA CTAAACTGTA TATAACCAAA ACAGAAGAGT CTCGTTCCAT CAGAAACTCC
AGAGCTACGT GTTTTTCTCT TCTCTTGTAA GAAGTTTCTT TTGTTATTGC CTCTTTGCTT
TGCTGGAAAT GTCAAGCAAA TTATGAATAC GTGACCAAAT ATTTTGTATC AGAAAAGCTT
TGAGCACCAG TTAAATCTAT TCCTTCCTTT TTTTCAAGTG GCACCAGCTT TTTCAGCTCT
ATTTTTATCC TTAAATTGCA TTTATTCCTA AAGTAGGCAG GGTATTTCAT ATTGAGCATA
CTCTCTTAAG ACTGAGGGCA TTTGGTTCCT GGGAGAATAG ACAACCCCAC ACTTTAAAAA
TACAGACTCC AATGTCTAGT CATGGGTCAA TTTAAAAAGT TGAAGAATAT CCACTGCTGG
TCACACTATA GGAGGCCAGG GACCATCACA TTAAAATGAG TGGGGATTTT CCAGCCAGAG
TAAAAAAAAA AAAAAAA
Deduced amino acid sequence: (length: 284) [FASTA format sequence]
MEAIKKKMQM LKLDKENAID RAEQAESDKK AAEEKCKQVE EELTHLQKKL KGTEDELDKY
SENLKDAQEK LELSEKKASD AEGDVAALNR RIQLVEEELD RAQERLATAL QKLEEAEKAA
DESERGMKVI ENRAMKDEEK MEIQEMQLKE AKHIAEEADR KYEEVARKLV ILEGELERAE
ERAEVSELKC GDLEEELKNV TNNLKSLEAA SEKYSEKEDK YEEEIKLLSD KLKEAETRAE
FAERTVAKLE KTIDDLEEKL AQAKEENVGL HQTLDQTLNE LNCI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 1 [Homo sapiens]. | 379 | e-105 | |
|
| TPM1 | tropomyosin alpha-1 chain isoform 3 [Homo sapiens]. | 322 | 5e-88 | O |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 304 | 1e-82 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm1 | tropomyosin alpha-1 chain isoform 3 [Mus musculus]. | 322 | 4e-88 | O |
|
| Tpm2 | tropomyosin beta chain [Mus musculus]. | 298 | 5e-81 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis familiaris]. | 383 | e-106 | O |
|
| LOC481598 | PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15 [Canis familiaris]. | 325 | 8e-89 | |
|
| TPM1 | PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 6 [Canis familiaris]. | 300 | 3e-81 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 380 | e-105 | O |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 299 | 5e-81 | O |
|
| TPM1 | tropomyosin alpha-1 chain [Bos taurus]. | 296 | 2e-80 | O |
|
| TPM2 | tropomyosin beta chain [Bos taurus]. | 280 | 3e-75 | O |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 155 | 6e-38 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 299 | 2e-81 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 298 | 6e-81 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 292 | 3e-79 | |
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 243 | 1e-64 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP