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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0138_A08
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,499)
[FASTA format sequence]
GAGAAGCGGG GCGGACCGAG AGGAGCGGAG CGGAGGGAGC TCTTGAGAGC CACGGCCGCC
GCCACTGCCG CGGCAGGGGC GTGGAGGGCA GGGGGCGGCC CGGGCCGCGG TTGCAAACAT
GGCTCAAAGC AGAGATGGTG GAAACCCCTT CGCCGAGCCC GGCGAGCTTG ACAACCCCTT
TCAGGACCCA GCTGTGATCC AGCACCGACC CAGCCCGCAG TATGCCACGC TTGACGTCTA
CAACCCTTTT GAGACCCGGG AGCCACCACC AAGCTATGAG CCTCCTGCCC CTGTTCCAGT
TGCACCACCC TCAGCCGCCC CCTTGCAGTC CTCGAGAAAG CTCAGCCCCA CAGAACCCAA
GAACTATGGT TCCTACAGCA CCCAGGCTTC AGCTGCAGCA GCCACAGCTG AACTGCTAAA
GAAGCAGGAG GAGCTCAACC GGAAGGCAGA GGAGTTGGAC CGGAGGGAGC GAGAGCTGCA
GCATGCTGCC CTGGGGGGCA CAGCTACTCG ACAGAACAAT TGGCCTCCTC TACCTTCGTT
TTGCCCAGTT CAGCCCTGCT TCTTCCAGGA CATCTCTATG GAGATCCCCC AAGAATTTCA
GAAGACAGTA TCCACGATGT ACTACCTCTG GATGTGCAGC ACCCTGGCTC TTCTCCTGAA
TTTCCTCGCC TGCCTGGCTA GCTTCTGTGT GGAGACCAAC ACTGGCTCAG GCTTCGGGCT
CTCAATCCTC TGGATCCTCC TGTTCACTCC CTGCTCCTTC GTCTGCTGGT ACCGTCCCAT
GTATAAGGCC TTCCGGAGTG ACAGTTCATT CAATTTCTTC GTTTTCTTCT TCATTTTCTT
CGTCCAGGAT GTCCTATATG TTCTGCAGGC CATTGGCATC CCAGGTTGGG GGTTCAGTGG
CTGGATCTCC GCTTTGATGT TGGTGAACAC CAACGCGGCT GTAGCTGTGC TTATGCTGCT
GGTCGCCCTG TTCTTCACTG GCATCGCTGT GCTGGGAATT GTGATGCTAA AGCGGATCCA
CTCCTTGTAT CGCCGCACGG GTGCCAGCTT TCAGAAGGCC CAGCAAGAAT TTGCTGCTGG
TGTCTTCTCC AACCCTGCGG TGCGAACTGC AGCTGCCAAT GCAGCCGCTG GAGCTGCCGA
AAATGCCTTC CGGGCCCCGT GACCCCTGAC TGGGATGCTC TGGCCCTGCC ACTTGAGGGA
GCTGACCTAG CCCCCATCCC TGAGGTCTCT GGGACTTTGT GAGACTTCAC TACTTGATGT
CTCCGCTCTA GTGCCCCCAG TCTCACAGCC ATGACTGCTG AACCTGACTT AAGGGTGTCG
AGAGCCCCCT GTGACCCAGT CACTGCTTCC CTCCCACCCG CCAAATCAGG CCACACTGCT
GCCACCTCTA CACACCCCAA CCCAGCTTCC CTCTGCTGTG CCAAGGCTGT TGCTTCGGTT
ATTTAAATAA AAAGAAAGTG GAACTGGAAC ACAAAAAAAA AAAAAAAAAA AAAAAAAAA
Deduced amino acid sequence: (length: 347) [FASTA format sequence]
MAQSRDGGNP FAEPGELDNP FQDPAVIQHR PSPQYATLDV YNPFETREPP PSYEPPAPVP
VAPPSAAPLQ SSRKLSPTEP KNYGSYSTQA SAAAATAELL KKQEELNRKA EELDRREREL
QHAALGGTAT RQNNWPPLPS FCPVQPCFFQ DISMEIPQEF QKTVSTMYYL WMCSTLALLL
NFLACLASFC VETNTGSGFG LSILWILLFT PCSFVCWYRP MYKAFRSDSS FNFFVFFFIF
FVQDVLYVLQ AIGIPGWGFS GWISALMLVN TNAAVAVLML LVALFFTGIA VLGIVMLKRI
HSLYRRTGAS FQKAQQEFAA GVFSNPAVRT AAANAAAGAA ENAFRAP
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | SCAMP3 | secretory carrier-associated membrane protein 3 isoform 1 [Homo sapiens]. | 438 | e-123 | O |
|
| SCAMP1 | secretory carrier-associated membrane protein 1 [Homo sapiens]. | 218 | 9e-57 | O |
|
| SCAMP2 | secretory carrier-associated membrane protein 2 [Homo sapiens]. | 214 | 1e-55 | O |
|
| SCAMP5 | secretory carrier-associated membrane protein 5 [Homo sapiens]. | 149 | 9e-36 | O |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Scamp3 | secretory carrier-associated membrane protein 3 [Mus musculus]. | 408 | e-114 | O |
|
| Scamp1 | secretory carrier-associated membrane protein 1 [Mus musculus]. | 219 | 3e-57 | O |
|
| Scamp2 | secretory carrier-associated membrane protein 2 [Mus musculus]. | 203 | 3e-52 | O |
|
| Scamp5 | secretory carrier-associated membrane protein 5 [Mus musculus]. | 149 | 4e-36 | O |
|
| Scamp4 | secretory carrier-associated membrane protein 4 [Mus musculus]. | 147 | 2e-35 | O |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC610337 | PREDICTED: similar to secretory carrier membrane protein 3 isoform 1 isoform 1 [Canis familiaris]. | 435 | e-122 | O |
|
| LOC489409 | PREDICTED: similar to secretory carrier membrane protein 3 isoform 1 [Canis familiaris]. | 419 | e-135 | O |
|
| LOC479172 | PREDICTED: similar to Secretory carrier-associated membrane protein 1 (Secretory carrier membrane protein 1) isoform 1 [Canis familiaris]. | 219 | 5e-57 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| SCAMP3 | secretory carrier-associated membrane protein 3 [Bos taurus]. | 437 | e-122 | O |
|
| SCAMP1 | secretory carrier-associated membrane protein 1 [Bos taurus]. | 218 | 9e-57 | |
|
| SCAMP2 | secretory carrier-associated membrane protein 2 [Bos taurus]. | 217 | 2e-56 | |
|
| SCAMP4 | secretory carrier-associated membrane protein 4 [Bos taurus]. | 148 | 1e-35 | |
|
| SCAMP5 | secretory carrier-associated membrane protein 5 [Bos taurus]. | 147 | 2e-35 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| SCAMP3 | secretory carrier membrane protein 3 [Sus scrofa]. | 451 | e-127 | |
|
| LOC100621742 | PREDICTED: secretory carrier-associated membrane protein 3-like [Sus scrofa]. | 263 | 2e-70 | |
|
| SCAMP1 | secretory carrier-associated membrane protein 1 [Sus scrofa]. | 219 | 2e-57 | |
|
| SCAMP2 | secretory carrier-associated membrane protein 2 [Sus scrofa]. | 216 | 3e-56 | |
|
| LOC100156508 | PREDICTED: secretory carrier-associated membrane protein 5-like [Sus scrofa]. | 149 | 5e-36 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-13414 | 4.1 | CTCTGCTGTGCCAAGGCTGTTGCTTCGGTTATTTAAATAAAAAGAAAGTGGAACTGGAAC |
Assembly member: TOP