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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
PBL01_0024_F10
Library: PBL01 (PBMC)
Individual: LWD5, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 2,888)
[FASTA format sequence]
CAGCGCGATG GCGGCGGCTC CTTCAGGCCC CTGAAGGGGG ATTTAGGCCC GGGAGATCCG
AGTCCATCCG CGGCGGGGAG AGGGCGAACG GGGTTGGCGG AGGCCGCCAT GGAGCTCAGA
GTGGGGAACA GGTACCGGCT GGGCCGGAAG ATCGGCAGCG GGTCCTTCGG AGACATCTAT
CTCGGTACGG ACATTGCTGC GGGAGAAGAA GTTGCCATCA AGCTTGAATG TGTCAAAACT
AAGCACCCTC AGCTCCACAT CGAGAGCAAA ATCTACAAGA TGATGCAGGG AGGAGTGGGC
ATCCCCACCA TCCGGTGGTG TGGGGCCGAG GGCGACTACA ACGTCATGGT CATGGAGCTG
CTGGGGCCCA GCCTGGAGGA CCTCTTCAAC TTCTGCTCCA GGAAGTTCAG CCTCAAGACC
GTCCTGCTGC TCGCTGACCA GATGATCAGC CGCATCGAGT ACATCCACTC GAAGAACTTC
ATCCACCGGG ACGTGAAGCC GGACAACTTC CTCATGGGGC TGGGCAAGAA GGGCAACCTG
GTGTACATCA TCGACTTCGG GCTGGCCAAG AAGTACCGGG ACGCCCGCAC CCACCAGCAC
ATCCCCTACC GCGAGAACAA GAACCTCACC GGCACCGCGC GCTACGCCTC CATCAACACG
CACCTCGGCA TCGAACAATC TCGGAGGGAC GACCTGGAAT CTCTGGGCTA CGTGCTCATG
TACTTCAACC TGGGCTCGCT GCCCTGGCAG GGCCTGAAGG CGGCCACCAA GCGCCAGAAG
TACGAGCGCA TCAGCGAGAA GAAGATGTCC ACGCCCATCG AGGTGCTCTG CAAAGGCTAC
CCCTCCGAGT TCGCCACGTA CCTGAACTTC TGCCGTTCCC TGCGCTTTGA TGACAAGCCT
GACTACTCGT ACCTGAGGCA GCTCTTCAGG AACCTGTTCC ACCGCCAGGG CTTCTCCTAC
GACTACGTCT TTGACTGGAA CATGCTCAAG TTTGGAGCCA GCCGGGCAGC CGACGACGCC
GAGCGGGAGC GCCGGGACCG AGAGGAGCGG CTGAGACACT CCCGCAACCC AGCCACCCGC
GGCCTCCCCT CCACGGCCTC AGGCCGGCTG AGGGGGACCC AGGAGGCGGC CCCTCCCACC
CCCCTCACCC CTACCTCACA CACGGCGAAC ACCTCTCCTC GGCCCGTGTC CGGCATGGAA
AGAGAGCGGA AAGTGAGTAT GCGGCTGCAC CGCGGGGCCC CCGTCAACAT CTCCTCGTCC
GACCTCACGG GCCGGCAAGA TACCTCCCGC ATGTCCACCT CACAGAATAG CATTCCTTTC
GAACACCACG GCAAGTAGCT GCACGGCTCC CGTCGGAAGG CAGCGCTGGA TTGCCGGTCG
GGTGGCTGCC AGCGGTCTCC AGTCCGCCGT GCACCGGTGA GAGCGCTCCT TTGGCTGAGG
GCAGACATGC ATGGCCGACC TACTCTGTTA TAGTGACACG CCCCGGTCTA GAACCGAACC
GTTACCACCG GGAGCTCTCC AGGCCACCCA CCCAGCGACG CCCACGGGGA AACAAACACA
AACCCAACCG GACAGACTGC ACGCGCTGCC ATCGCCAGGG GCTGCGCCGA GGCCCCGCGA
GCTCGGTGGC AGCGGGGCTG GGAAGAAGAG AGACGAGCGC AGAGAGAATC AGACTCCCAT
CCAAGAGCCT CTTGGTCCGG TCCCTTGGGT GGCGGCGCGC CCGTGCCCCT GCCGAGTCTG
CCGTAACCAC CGACCTTCTA CCCGGCTAAG ACAGTTTTGT ATCATTTTGC TAAAAATTAT
TGGCTTAAAT CTGTGTAAAG AAACCTGTCT TTTTATTGTT TCTTTCCTGT CTGTTTTGCT
GTCTGTAAAG AAATCCGAAG CAGACGCTGG CGTGGAGTCT GGGAGGGCAG GCCGGGCGCG
GAGGAGCCCA CGGGGCCTCC CGGTCTGTGT CTCGTGCTGT CTTGTGCGGG CCGCTTGGGA
GCCTGGCACG TGTATACGCG TGTGTAAGTA ACGTGTGTGT CCGTGTGTGC CTGTGTCTCG
TGACCTCCCT GACCCTCCCT GCCATCCCCG TGGACTGAAG CGCCTGCTCA CAGTGGACCC
GCTGGGCACT CGAGTCGTCA GAGCGATTGG ACAGTGCCGG CGACAGCGCG GGCGCAGCAG
GTGCCTCCCG ATTGAGCAGC CACGGCGAGG AGGAAGCTGA GCCTGGAGAC GTGGGGCCCT
CCTGGGGGCG GGGTGCTTGT TTCAGTGGCG GGTGCCTCCG CGCCTTTGCG TCTGGGAGGT
TCTCTAAACA GACTGTCGGC GTTAATAGCG CAGACTGGTC TTCCGTCCGT GTTAGCATCC
GGATGAATGG CCAAGGGCTG TGGCGTCCGC CCCGGATGCC AGCTTTGCCC AGGCCCAGGC
AGGCCGGCGC ACCCAGGGGG ATCGGCTCTG AAGTGCCGCG AAGCAGGGGA CTCTTGACAG
CCTGACCGCC CAGCAGGGCG AGGGTCTGGA TGGGGGTGGG GGCCTGGGCA GCCAGGGGCC
TGAAAGGCGT CCGTGTCCTG GGACACCCTG ACTGCCGAGT GGCCGGCCCG GAGCACAGCC
GTTTGCGTCT TTCCGAATCC CGAGCCGGCT GCTCCGTGTG TTGGGGCGCG GGCACTCGGC
CGCGTGGGCT GAGACCCAGG AGGGTCAGCG CGAGCTGCCC AGTGCCTTGC GCAGAGGGCG
CCTGCCTTCC CGGGGAGGCA TTGGCAGCTG CGGCCCTCGC CCCGCGCCGC GGCTGCAACG
TCTGCATCGC CTGTGTGCCG GCGGCCGGTC CCTGCGCTGC GCTTCTGTTG GATCACTGTA
CCCGTGTCCA CCCTCCGTGT AAATAATAAA CTCGTGACCA CTTCCACCTC TGCAAAAAAA
AAAAAAAA
Deduced amino acid sequence: (length: 409) [FASTA format sequence]
MELRVGNRYR LGRKIGSGSF GDIYLGTDIA AGEEVAIKLE CVKTKHPQLH IESKIYKMMQ
GGVGIPTIRW CGAEGDYNVM VMELLGPSLE DLFNFCSRKF SLKTVLLLAD QMISRIEYIH
SKNFIHRDVK PDNFLMGLGK KGNLVYIIDF GLAKKYRDAR THQHIPYREN KNLTGTARYA
SINTHLGIEQ SRRDDLESLG YVLMYFNLGS LPWQGLKAAT KRQKYERISE KKMSTPIEVL
CKGYPSEFAT YLNFCRSLRF DDKPDYSYLR QLFRNLFHRQ GFSYDYVFDW NMLKFGASRA
ADDAERERRD REERLRHSRN PATRGLPSTA SGRLRGTQEA APPTPLTPTS HTANTSPRPV
SGMERERKVS MRLHRGAPVN ISSSDLTGRQ DTSRMSTSQN SIPFEHHGK
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | CSNK1D | casein kinase I isoform delta isoform 2 [Homo sapiens]. | 795 | 0.0 | |
|
| CSNK1E | casein kinase I isoform epsilon [Homo sapiens]. | 686 | 0.0 | |
|
| CSNK1G3 | casein kinase I isoform gamma-3 isoform 3 [Homo sapiens]. | 359 | 7e-99 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Csnk1d | casein kinase I isoform delta isoform 2 [Mus musculus]. | 795 | 0.0 | |
|
| Csnk1e | casein kinase I isoform epsilon [Mus musculus]. | 689 | 0.0 | |
|
| Csnk1a1 | casein kinase I isoform alpha [Mus musculus]. | 473 | e-133 | |
|
| Ttbk2 | tau-tubulin kinase 2 isoform 2 [Mus musculus]. | 170 | 5e-42 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC475928 | PREDICTED: similar to casein kinase 1, delta isoform 2 [Canis familiaris]. | 740 | 0.0 | |
|
| LOC474510 | PREDICTED: similar to casein kinase 1 epsilon isoform 3 [Canis familiaris]. | 689 | 0.0 | |
|
| LOC479331 | PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha) (CK1) isoform 3 [Canis familiaris]. | 473 | e-133 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CSNK1D | casein kinase 1, delta [Bos taurus]. | 795 | 0.0 | |
|
| CSNK1E | casein kinase 1 epsilon [Bos taurus]. | 596 | e-170 | |
|
| CSNK1A1 | casein kinase I isoform alpha [Bos taurus]. | 473 | e-133 | |
|
| LOC100300748 | PREDICTED: casein kinase I alpha-like [Bos taurus]. | 449 | e-126 | |
|
| CSNK1D | PREDICTED: casein kinase 1, delta [Bos taurus]. | 376 | e-104 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CSNK1E | PREDICTED: casein kinase I isoform epsilon isoform 2 [Sus scrofa]. | 689 | 0.0 | |
|
| LOC100625051 | PREDICTED: hypothetical protein LOC100625051 [Sus scrofa]. | 478 | e-135 | |
|
| CSNK1A1 | PREDICTED: casein kinase I isoform alpha isoform 1 [Sus scrofa]. | 473 | e-133 | |
|
| TTBK2 | PREDICTED: tau-tubulin kinase 2 [Sus scrofa]. | 169 | 8e-42 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-00600 | 4.1 | ATTGTTTCTTTCCTGTCTGTTTTGCTGTCTGTAAAGAAATCCGAAGCAGACGCTGGCGTG |
Assembly member: TOP