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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
PST01_0067_C06
Library: PST01 (Prostate)
Individual: LWD10, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 2,912)
[FASTA format sequence]
GAATATCGCT CGGAGCGCTG CGCGGCGCTG GGGGAGCAGG CGCCAGCCAG GCGGCGACGC
GGCCACACGC AGCGAGCCAG CCACCCCCGG GCGACGCGCG GGGCCCGGGA GCGCAATGAC
CGAGGCGCGA GGGGCCCGGG GCGCGCTCGC CGGCCCCCTG CGGGCGCTCT GCGTCCTGGG
CTGCCTGTTG GGCCGCGCCG CCGCCGCGCC GTCGCCCATC ATCAAGTTTC CCGGAGATGT
CGCCCCCAAA ACGGACAAAG AGTTGGCTGT GCAATACCTG AACACCTTCT ACGGCTGCCC
CAAAGAGAGT TGTAACCTGT TTGTGCTGAA GGACACACTA AAGAAGATGC AGAAGTTCTT
CGGGCTCCCC CAGACAGGCG AACTCGACCA GAGCACCATC GAGACCATGA GGAAGCCGCG
CTGCGGCAAC CCCGACGTGG CCAATTACAA CTTCTTCCCC CGCAAGCCCA AGTGGGACAA
GACCCAGATC ACCTACAGGA TCATTGGCTA CACGCCTGAT CTGGACCCCG AAACGGTGGA
TGATGCCTTC GCTCGGGCCT TCCGCGTCTG GAGTGACGTG ACCCCATTAC GGTTTTCCCG
GATCCATGAC GGAGAGGCTG ACATCATGAT CAACTTCGGC CGCTGGGAGC ACGGAGATGG
ATACCCCTTT GATGGCAAGG ACGGGCTCCT GGCTCACGCC TTCGCCCCGG GCCCTGGCGT
CGGGGGAGAC TCCCACTTTG ACGATGATGA GCTGTGGACC CTGGGAGAAG GACAAGTGGT
GCGTGTGAAG TATGGAAACG CCGACGGGGA GTATTGCAAG TTCCCCTTCT CCTTCAACGG
CAAGGAGTAT AACAGCTGCA CCGACACGGG CCGCAGCGAT GGCTTCCTCT GGTGTTCCAC
CACCTACAAC TTCGACAAGG ATGGCAAGTA CGGCTTCTGC CCCCACGAAG CCCTGTTCAC
CATGGGTGGC AATGCCGACG GACAGCCCTG CAAGTTCCCG TTCCGCTTCC AGGGCACATC
CTACAACAGC TGCACCACGG AGGGCCGTAC AGACGGCTAC CGATGGTGCG GCACCACCGA
GGACTACGAC CGCGACAAGA AGTACGGCTT CTGCCCTGAG ACTGCCATGT CCACTGTGGG
CGGGAACTCG GAAGGTGCCC CCTGCGTCTT CCCCTTCACC TTCCTGGGCA ACAAGCACGA
GAGCTGCACC AGCGCCGGCC GCAGTGATGG CAAGTTGTGG TGCGCGACCA CCGCCAACTA
CGATGATGAC CGCAAGTGGG GCTTCTGCCC CGATCAAGGG TACAGCCTGT TCCTGGTGGC
CGCCCATGAG TTTGGCCATG CCATGGGGCT GGAGCACTCA GAGGACCCTG GAGCCCTGAT
GGCCCCCATC TACACCTATA CCAAGAACTT CCGCCTGTCC CACGACGATG TCAAGGGCAT
CCAGGAGCTC TACGGGGCCT CCCCTGACAT TGACACGGGC ACCGGCCCCA CCCCCACGCT
GGGTCCTGTC ACTCCCGAGA TCTGCAAACA GGACATCGTC TTCGATGGCA TCTCTCAGAT
CCGCGGCGAG ATCTTCTTCT TCAAGGACCG GTTCATCTGG CGGACAGTGA CACCACGTGA
CAAGCCCATG GGGCCCCTGC TGGTGGCCAC ATTCTGGCCT GAGCTCCCGG AAAAGATCGA
TGCTGTGTAC GAGGCCCCAC AGGAGGAGAA GGCTGTGTTC TTTGCAGGGA ATGAGTACTG
GGTCTATTCA GCCAGCACCC TGGAGAGAGG GTACCCCAAG CCGCTGACCA GCCTGGGGCT
TCCGCCTGAT GTCCAGAAAG TGGATGCTGC CTTTAACTGG AGCAAGAACA AGAAGACATA
CATCTTCGCT GGAGACAAGT TCTGGAGGTA CAATGAAGTG AAGAAGAAGA TGGATCCTGG
CTTCCCCAAG CTCATTGCAG ACGCCTGGAA TGCCATCCCG GATAACCTGG ATGCCGTGGT
GGACCTGCAG GGCGGGGGTC ACAGCTACTT CTTCAAGGGC GCGTATTACC TGAAGTTGGA
GAACCAAAGT CTGAAGAGCG TGAAGTTCGG AAGCATCAAA TCCGACTGGC TGGGCTGCTG
AGCTGGCTCC ACCTCCCCCA GGGCCTGCCT CTCCATCGCC TTCTGCACAC CGGGCCCTGG
GTGCCAGGGG AGGACCCGGC TGGGCCTGGC AGCCCTCAGC TCTGTAGTTA ATCAGCCTTC
TCACCCCCAC CTGGTAATTT AAGAAACCGC AGAGTGGCTC TGCCCTGTGC TCACGGAAAG
GTGCTGATCG TACCCCGCCC AGGTGCCCCT CCCCCCTCTG TACCTCACCA GCCCTCCAGA
GCACCCCCAA AGTGATGCTT TGATATTCCC TATGCAGCTC TGCCTTGGGC TGCCCTGGTG
CTGCCACACT TTAGGCTCTT CTCCTTCCAC AACCTTCTGT GGCTTACAGC ACCCTTGGAG
CCAAAAGAGA CTGTCTCGGG AGGGCACTGG TGGCCCGACA GCCTGACATG GCCTAGGGTA
GGCGGAGAGG GGCACGGCTG GGTGGCCGCC CCAGACACCT GGCCTTCTCA CTGCTGGCCG
CCTTAGAACC GTCCCTGCAT TAGCAGTTTG CTTCCTATGC ACTTTGTTCT TGTCTTTTGA
TCTTTTTAAA TTTTTCTACG TTGAAATTCC ATTTCCCGAC AGAAGGACTC AGGTTGTCTG
AAGTCACTGC ACAATGCCTC TCAGCCCACG TGGTGATGGC CCCCTTGTCC ACTCTTATTT
AGTATGTCCC TACTCTGTCA CTTTCTCCAC TGGATGGAGG AAAACCAAGC CATGGCTCCC
TGCCCAGCCC TCCCCTCCCT TCAACGGTTC CCCATGGGAA ACATCAACCA GTATGAATAA
AGACACCAAT TGAGAAAAAA AAAAAAAAAA AA
Deduced amino acid sequence: (length: 661) [FASTA format sequence]
MTEARGARGA LAGPLRALCV LGCLLGRAAA APSPIIKFPG DVAPKTDKEL AVQYLNTFYG
CPKESCNLFV LKDTLKKMQK FFGLPQTGEL DQSTIETMRK PRCGNPDVAN YNFFPRKPKW
DKTQITYRII GYTPDLDPET VDDAFARAFR VWSDVTPLRF SRIHDGEADI MINFGRWEHG
DGYPFDGKDG LLAHAFAPGP GVGGDSHFDD DELWTLGEGQ VVRVKYGNAD GEYCKFPFSF
NGKEYNSCTD TGRSDGFLWC STTYNFDKDG KYGFCPHEAL FTMGGNADGQ PCKFPFRFQG
TSYNSCTTEG RTDGYRWCGT TEDYDRDKKY GFCPETAMST VGGNSEGAPC VFPFTFLGNK
HESCTSAGRS DGKLWCATTA NYDDDRKWGF CPDQGYSLFL VAAHEFGHAM GLEHSEDPGA
LMAPIYTYTK NFRLSHDDVK GIQELYGASP DIDTGTGPTP TLGPVTPEIC KQDIVFDGIS
QIRGEIFFFK DRFIWRTVTP RDKPMGPLLV ATFWPELPEK IDAVYEAPQE EKAVFFAGNE
YWVYSASTLE RGYPKPLTSL GLPPDVQKVD AAFNWSKNKK TYIFAGDKFW RYNEVKKKMD
PGFPKLIADA WNAIPDNLDA VVDLQGGGHS YFFKGAYYLK LENQSLKSVK FGSIKSDWLG
C
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | MMP2 | 72 kDa type IV collagenase isoform a preproprotein [Homo sapiens]. | 1303 | 0.0 | |
|
| MMP9 | matrix metalloproteinase-9 preproprotein [Homo sapiens]. | 545 | e-155 | |
|
| MMP13 | collagenase 3 preproprotein [Homo sapiens]. | 215 | 2e-55 | |
|
| MMP16 | matrix metalloproteinase-16 [Homo sapiens]. | 200 | 7e-51 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Mmp2 | 72 kDa type IV collagenase precursor [Mus musculus]. | 1287 | 0.0 | |
|
| Mmp9 | matrix metalloproteinase-9 precursor [Mus musculus]. | 523 | e-148 | |
|
| Mmp10 | stromelysin-2 precursor [Mus musculus]. | 219 | 1e-56 | |
|
| Mmp13 | collagenase 3 preproprotein [Mus musculus]. | 212 | 1e-54 | |
|
| Mmp12 | macrophage metalloelastase precursor [Mus musculus]. | 187 | 4e-47 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| MMP-2 | PREDICTED: similar to matrix metalloproteinase 2 preproprotein [Canis familiaris]. | 1250 | 0.0 | |
|
| MMP9 | matrix metalloproteinase-9 precursor [Canis lupus familiaris]. | 537 | e-152 | |
|
| MMP13 | PREDICTED: similar to Collagenase 3 precursor (Matrix metalloproteinase-13) (MMP-13) [Canis familiaris]. | 219 | 2e-56 | |
|
| MMP3 | stromelysin-1 precursor [Canis lupus familiaris]. | 218 | 3e-56 | |
|
| MMP14 | PREDICTED: similar to matrix metalloproteinase 14 preproprotein isoform 1 [Canis familiaris]. | 186 | 1e-46 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| MMP2 | 72 kDa type IV collagenase precursor [Bos taurus]. | 1301 | 0.0 | |
|
| MMP9 | matrix metalloproteinase-9 precursor [Bos taurus]. | 525 | e-149 | |
|
| MMP12 | macrophage metalloelastase [Bos taurus]. | 216 | 7e-56 | |
|
| MMP13 | collagenase 3 precursor [Bos taurus]. | 213 | 6e-55 | |
|
| LOC100336575 | PREDICTED: matrix metalloproteinase 8 preproprotein-like [Bos taurus]. | 186 | 1e-46 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| MMP2 | 72 kDa type IV collagenase [Sus scrofa]. | 1321 | 0.0 | |
|
| MMP9 | matrix metalloproteinase-9 [Sus scrofa]. | 531 | e-151 | |
|
| MMP-13 | PREDICTED: collagenase 3 [Sus scrofa]. | 215 | 1e-55 | |
|
| MMP3 | stromelysin-1 [Sus scrofa]. | 208 | 2e-53 | |
|
| MMP14 | matrix metalloproteinase-14 precursor [Sus scrofa]. | 187 | 2e-47 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-15585 | 4.1 | CTCCCTTCAACGGTTCCCCATGGGAAACATCAACCAGTATGAATAAAGACACCAATTGAG |
Assembly member: TOP