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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
SMG01_0058_C12
Library: SMG01 (Submaxillary gland)
Individual: LWD2, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,491)
[FASTA format sequence]
GATTTTTGTG GTGATATTGG GACCCAGTCC TGAAAGCTTG GGTTTTTGGG GTGTGCTTTG
TTGGTGGGTA GTTTCAAGGT TGCAAAACAG TAAGCCTCAT TTGAGGAAAT ACAATATTTT
GCACAGAAGC TTCTTGGAAG GAAGTCCTGG TTTAATTGCC AAAATGACAT GCTGGTGGTC
AGGGCTCAGA TTCCACAGGT GTTGGATTTG TTTGTTGTGG TTTTCGAAAT CCTGACTTGT
AGGTAACCTG GTGCGAGGAA AAACCTTTTT CCTGTCCGGC TAGGAAGATG GCGTCCCGCA
AGGAAGGCAC TGGTTCTGCC GCCACCTCTT CCAGCTCCAC CACCGGCGCT GCTGGGAAAG
GCAAAGGCAA AGGAGGGTCT GGAGATTCGG CGGTGAAGCA AGTGCAGATA GATGGCTTGG
TGGTCTTGAA GATTATCAAA CATTACCAAG AAGAAGGACA AGGAACTGAG GTGGTTCAAG
GAGTGCTTTT GGGCCTTGTT GTAGAAGATC GACTTGAAAT TACCAACTGC TTTCCTTTTC
CCCAGCACAC AGAAGATGAT GCTGACTTTG ATGAAGTTCA ATATCAGATG GAAATGATGC
GCAGCCTTCG CCACGTAAAC ATTGACCATC TCCATGTGGG CTGGTACCAG TCCACATACT
ATGGCTCTTT TGTCGCCCGG GCACTTCTGG ATTCTCAGTT TAGTTACCAG CATGCGACTG
AAGAGTCTGT TGTTCTCATT TACGATCCCA TAAAAACTGC CCAAGGATCT CTCTCACTAA
AGGCATACAG ACTGACTCCT AAACTGATGG AAGTTTGTAA AGAGAAGGAT TTTTCTCCCG
AAGCATTGAA AAAGGGAAAT ATCACCTTTG AGCACATGTT TGAAGAAGTG CCGATTGTCA
TTAAAAATTC ACATCTGATC AATGTCCTAA TGTGGGAGCT TGAGAAGAAG TCAGCTGTAG
CAGATAAACA TGAATTGCTC AGTCTTGCCA GCAGCAATCA TTTGGGGAAG AACCTCCAGT
TGCTGATGGA CAGAGTGGAT GAAATGAGCC GAGATATAGT TAAATATAAC ACATATCTGA
GGAACACGAG TAAACAGCAG CAGCAGAAAC ATCAGTATCA GCAGCGCCGC CAGCAGGAGA
ATATGCAGCG CCAGAGTCGA GGAGAACCGC CACTCCCTGA GGAGGACCTG TCCAAGCTCT
TCAAGCCGCA CCAGCCCCCT GCCAGGATGG ATTCACTGCT CATTGCAGGC CAGATTAACA
CTTACTGCCA GAACATCAAG GAGTTCACTG CCCAAAACTT AGGCAAACTC TTCATGGCCC
AGGCTCTTCA AGAATACAAC AACTAAGAAA AGGAAGTTTC CAGAAAAGGA GTTAACATGG
ACTCTTGAGA TCACATTGGG GCGACTTTTG GAAGAAACAC ACTTGCATAT TGAAAAGTCT
TTCTAGCACA TAATAATAAA ATAAAGATAA AACAAAAAAA AAAAAAAAAA A
Deduced amino acid sequence: (length: 352) [FASTA format sequence]
MASRKEGTGS AATSSSSTTG AAGKGKGKGG SGDSAVKQVQ IDGLVVLKII KHYQEEGQGT
EVVQGVLLGL VVEDRLEITN CFPFPQHTED DADFDEVQYQ MEMMRSLRHV NIDHLHVGWY
QSTYYGSFVA RALLDSQFSY QHATEESVVL IYDPIKTAQG SLSLKAYRLT PKLMEVCKEK
DFSPEALKKG NITFEHMFEE VPIVIKNSHL INVLMWELEK KSAVADKHEL LSLASSNHLG
KNLQLLMDRV DEMSRDIVKY NTYLRNTSKQ QQQKHQYQQR RQQENMQRQS RGEPPLPEED
LSKLFKPHQP PARMDSLLIA GQINTYCQNI KEFTAQNLGK LFMAQALQEY NN
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | EIF3H | eukaryotic translation initiation factor 3 subunit H [Homo sapiens]. | 531 | e-151 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Eif3h | eukaryotic translation initiation factor 3 subunit H [Mus musculus]. | 530 | e-151 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC475081 | PREDICTED: similar to eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa isoform 1 [Canis familiaris]. | 536 | e-152 | |
|
| LOC612613 | PREDICTED: similar to eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa [Canis familiaris]. | 364 | e-100 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| EIF3H | eukaryotic translation initiation factor 3 subunit H [Bos taurus]. | 536 | e-152 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100522801 | PREDICTED: eukaryotic translation initiation factor 3 subunit H-like isoform 2 [Sus scrofa]. | 541 | e-154 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-16941 | 4.1 | ATTGGGGCGACTTTTGGAAGAAACACACTTGCATATTGAAAAGTCTTTCTAGCACATAAT |
Assembly member: TOP